Wall clock time and date at job start Mon Mar 30 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48504 * 109.46819 * 239.99719 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47175 * 120.00056 * 3 2 1 7 7 C 1.37874 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00153 * 185.48983 * 7 2 1 9 9 C 1.50699 * 120.00068 * 5.48842 * 7 2 1 10 10 H 1.08995 * 109.47227 * 335.11182 * 9 7 2 11 11 C 1.53006 * 109.47337 * 215.10484 * 9 7 2 12 12 N 1.46899 * 109.46599 * 65.32211 * 11 9 7 13 13 C 1.50706 * 109.47272 * 95.10956 * 9 7 2 14 14 C 1.34205 * 126.49736 * 60.02025 * 13 9 7 15 15 N 1.36903 * 109.92118 * 179.97438 * 14 13 9 16 16 H 0.97008 * 125.06372 * 180.02562 * 15 14 13 17 17 C 1.37687 * 109.86688 * 0.27073 * 15 14 13 18 18 C 1.39121 * 133.47211 * 180.44319 * 17 15 14 19 19 C 1.37941 * 119.76015 * 179.58986 * 18 17 15 20 20 F 1.35101 * 119.69700 * 179.69218 * 19 18 17 21 21 C 1.39032 * 120.61065 * 359.71144 * 19 18 17 22 22 C 1.36608 * 120.50058 * 0.02562 * 21 19 18 23 23 C 1.39631 * 119.80071 * 359.97438 * 22 21 19 24 24 H 0.96999 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47479 * 185.31673 * 11 9 7 26 26 H 1.08995 * 109.46935 * 305.32588 * 11 9 7 27 27 H 1.00899 * 111.00499 * 56.04941 * 12 11 9 28 28 H 1.00902 * 111.00170 * 179.97438 * 12 11 9 29 29 H 1.08000 * 125.04021 * 359.96241 * 14 13 9 30 30 H 1.08005 * 120.11851 * 359.27417 * 18 17 15 31 31 H 1.07995 * 119.74854 * 180.02562 * 21 19 18 32 32 H 1.08002 * 120.09852 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0808 -1.1961 0.0900 9 6 1.2562 -2.4962 -0.1237 10 1 0.2345 -2.3635 0.2320 11 6 1.9539 -3.5676 0.7167 12 7 1.8643 -3.2097 2.1386 13 6 1.2333 -2.9267 -1.5678 14 6 2.2996 -3.1854 -2.3406 15 7 1.8892 -3.5496 -3.5949 16 1 2.4794 -3.7845 -4.3281 17 6 0.5142 -3.5276 -3.6622 18 6 -0.3994 -3.8111 -4.6723 19 6 -1.7517 -3.7010 -4.4233 20 9 -2.6375 -3.9707 -5.4070 21 6 -2.2114 -3.3148 -3.1693 22 6 -1.3303 -3.0373 -2.1630 23 6 0.0428 -3.1426 -2.3941 24 1 -0.4850 0.8400 -0.0004 25 1 1.4695 -4.5303 0.5532 26 1 3.0018 -3.6336 0.4240 27 1 0.9039 -3.0791 2.4189 28 1 2.3178 -3.9026 2.7152 29 1 3.3288 -3.1163 -2.0206 30 1 -0.0509 -4.1114 -5.6495 31 1 -3.2732 -3.2335 -2.9895 32 1 -1.6945 -2.7374 -1.1915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:48 Heat of formation + Delta-G solvation = 6.893807 kcal Electronic energy + Delta-G solvation = -17597.844665 eV Core-core repulsion = 14665.858856 eV Total energy + Delta-G solvation = -2931.985809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.47689 -40.56596 -36.17310 -35.11879 -32.21833 -31.35876 -29.36819 -28.46134 -26.47818 -24.08808 -22.55485 -21.42224 -21.03091 -18.50231 -17.57027 -16.66822 -16.17604 -15.58802 -15.19770 -14.75290 -14.66995 -14.30261 -13.73035 -13.44406 -13.36592 -13.08008 -12.56039 -12.36147 -12.04474 -11.37132 -11.20228 -10.81024 -10.78680 -10.69013 -10.44910 -10.33815 -9.61159 -8.99917 -8.78549 -8.36139 -7.65768 -7.61235 -6.85462 -5.91241 -3.89232 1.56092 2.02385 3.37927 3.43417 3.44985 3.52977 3.65451 4.37650 4.54253 4.83825 5.18446 5.35499 5.45623 5.58584 5.64392 5.79243 5.95423 6.14584 6.30001 6.35917 6.49020 6.55392 6.71806 6.81036 7.03339 7.08815 7.37302 7.52627 7.71632 7.88323 8.01203 8.10871 8.20090 8.34428 8.49974 9.12848 9.70383 11.17791 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.007406 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.908737 B = 3779.787850 C = 4137.515485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.478 4.478 8 H 0.052 0.948 9 C 0.093 3.907 10 H 0.067 0.933 11 C 0.081 3.919 12 N -0.832 5.832 13 C -0.085 4.085 14 C 0.011 3.989 15 N -0.600 5.600 16 H 0.406 0.594 17 C 0.113 3.887 18 C -0.181 4.181 19 C 0.105 3.895 20 F -0.150 7.150 21 C -0.199 4.199 22 C -0.014 4.014 23 C -0.107 4.107 24 H 0.259 0.741 25 H -0.006 1.006 26 H 0.051 0.949 27 H 0.336 0.664 28 H 0.318 0.682 29 H 0.162 0.838 30 H 0.121 0.879 31 H 0.126 0.874 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 -8.309 -5.056 9.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.073 3.927 10 H 0.085 0.915 11 C -0.049 4.049 12 N -0.360 5.360 13 C -0.092 4.092 14 C -0.111 4.111 15 N -0.203 5.203 16 H 0.242 0.758 17 C 0.004 3.996 18 C -0.203 4.203 19 C 0.085 3.915 20 F -0.129 7.129 21 C -0.220 4.220 22 C -0.033 4.033 23 C -0.113 4.113 24 H 0.069 0.931 25 H 0.012 0.988 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.180 0.820 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.565 -7.551 -5.338 9.264 hybrid contribution 0.124 0.094 -0.676 0.694 sum 0.690 -7.457 -6.014 9.605 Atomic orbital electron populations 1.69870 1.05787 1.26413 1.50849 1.24879 0.94769 0.98853 0.94954 0.86752 0.79674 0.83689 0.78363 1.20687 1.21613 1.20298 1.20731 0.92827 0.89474 1.48610 0.92938 1.17464 0.98990 0.92187 0.84039 0.91467 1.21861 0.99426 0.95093 0.88554 1.58498 1.21869 1.51771 1.03813 1.21345 0.88652 1.00217 0.98970 1.21482 0.99496 1.06876 0.83289 1.41653 1.04093 1.61891 1.12684 0.75823 1.17814 0.83885 1.02437 0.95513 1.19562 0.90555 1.11350 0.98801 1.17109 0.85784 1.02895 0.85689 1.91425 1.68123 1.91904 1.61419 1.20463 1.00412 1.08787 0.92293 1.20250 0.90951 0.93235 0.98820 1.19386 0.93849 1.04805 0.93223 0.93149 0.98751 0.93008 0.85189 0.87205 0.82025 0.86083 0.85600 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 12.77 55.43 0.71 -24.27 16 2 C 0.07 1.82 5.45 -17.82 -0.10 1.72 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -12.46 7.88 -34.44 -0.27 -12.74 16 8 H 0.05 1.38 7.82 -52.48 -0.41 0.97 16 9 C 0.09 2.15 2.47 -92.92 -0.23 1.92 16 10 H 0.07 1.73 7.23 -51.93 -0.38 1.36 16 11 C 0.08 1.62 6.00 -3.82 -0.02 1.59 16 12 N -0.83 -15.67 9.35 -10.37 -0.10 -15.77 16 13 C -0.08 -1.83 5.04 -102.70 -0.52 -2.35 16 14 C 0.01 0.20 11.35 -16.71 -0.19 0.01 16 15 N -0.60 -9.77 6.07 -10.65 -0.06 -9.83 16 16 H 0.41 4.98 8.96 -40.82 -0.37 4.62 16 17 C 0.11 2.08 7.27 -84.00 -0.61 1.47 16 18 C -0.18 -3.03 10.05 -39.36 -0.40 -3.42 16 19 C 0.11 1.82 7.28 -39.40 -0.29 1.53 16 20 F -0.15 -2.47 17.25 2.25 0.04 -2.43 16 21 C -0.20 -3.48 9.95 -39.88 -0.40 -3.88 16 22 C -0.01 -0.28 10.05 -39.65 -0.40 -0.68 16 23 C -0.11 -2.23 6.35 -105.13 -0.67 -2.90 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H -0.01 -0.11 8.14 -51.93 -0.42 -0.53 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.34 6.24 8.99 -39.29 -0.35 5.89 16 28 H 0.32 4.91 9.08 -39.29 -0.36 4.55 16 29 H 0.16 2.68 8.06 -52.49 -0.42 2.25 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 LS Contribution 284.35 15.07 4.29 4.29 Total: -1.00 -29.40 284.35 -7.77 -37.17 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -3.53 Total: 12.13 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.08 Total: -17.72 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.55 Total: -49.88 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.40 -7.77 -37.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.060 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds