Wall clock time and date at job start Mon Mar 30 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48504 * 109.46819 * 239.99719 * 3 2 1 5 5 H 1.48492 * 109.47219 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47175 * 120.00056 * 3 2 1 7 7 C 1.37874 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00153 * 185.48983 * 7 2 1 9 9 C 1.50699 * 120.00068 * 5.48842 * 7 2 1 10 10 H 1.08995 * 109.47227 * 335.11182 * 9 7 2 11 11 C 1.53006 * 109.47337 * 215.10484 * 9 7 2 12 12 N 1.46899 * 109.46599 * 65.32211 * 11 9 7 13 13 C 1.50706 * 109.47272 * 95.10956 * 9 7 2 14 14 C 1.34205 * 126.49736 * 60.02025 * 13 9 7 15 15 N 1.36903 * 109.92118 * 179.97438 * 14 13 9 16 16 H 0.97008 * 125.06372 * 180.02562 * 15 14 13 17 17 C 1.37687 * 109.86688 * 0.27073 * 15 14 13 18 18 C 1.39121 * 133.47211 * 180.44319 * 17 15 14 19 19 C 1.37941 * 119.76015 * 179.58986 * 18 17 15 20 20 F 1.35101 * 119.69700 * 179.69218 * 19 18 17 21 21 C 1.39032 * 120.61065 * 359.71144 * 19 18 17 22 22 C 1.36608 * 120.50058 * 0.02562 * 21 19 18 23 23 C 1.39631 * 119.80071 * 359.97438 * 22 21 19 24 24 H 0.96999 * 120.00010 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47479 * 185.31673 * 11 9 7 26 26 H 1.08995 * 109.46935 * 305.32588 * 11 9 7 27 27 H 1.00899 * 111.00499 * 56.04941 * 12 11 9 28 28 H 1.00902 * 111.00170 * 179.97438 * 12 11 9 29 29 H 1.08000 * 125.04021 * 359.96241 * 14 13 9 30 30 H 1.08005 * 120.11851 * 359.27417 * 18 17 15 31 31 H 1.07995 * 119.74854 * 180.02562 * 21 19 18 32 32 H 1.08002 * 120.09852 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0808 -1.1961 0.0900 9 6 1.2562 -2.4962 -0.1237 10 1 0.2345 -2.3635 0.2320 11 6 1.9539 -3.5676 0.7167 12 7 1.8643 -3.2097 2.1386 13 6 1.2333 -2.9267 -1.5678 14 6 2.2996 -3.1854 -2.3406 15 7 1.8892 -3.5496 -3.5949 16 1 2.4794 -3.7845 -4.3281 17 6 0.5142 -3.5276 -3.6622 18 6 -0.3994 -3.8111 -4.6723 19 6 -1.7517 -3.7010 -4.4233 20 9 -2.6375 -3.9707 -5.4070 21 6 -2.2114 -3.3148 -3.1693 22 6 -1.3303 -3.0373 -2.1630 23 6 0.0428 -3.1426 -2.3941 24 1 -0.4850 0.8400 -0.0004 25 1 1.4695 -4.5303 0.5532 26 1 3.0018 -3.6336 0.4240 27 1 0.9039 -3.0791 2.4189 28 1 2.3178 -3.9026 2.7152 29 1 3.3288 -3.1163 -2.0206 30 1 -0.0509 -4.1114 -5.6495 31 1 -3.2732 -3.2335 -2.9895 32 1 -1.6945 -2.7374 -1.1915 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:47 Heat of formation + Delta-G solvation = -11.832001 kcal Electronic energy + Delta-G solvation = -17598.656677 eV Core-core repulsion = 14665.858856 eV Total energy + Delta-G solvation = -2932.797821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.80103 -41.99488 -37.62166 -36.75130 -34.07876 -32.89553 -30.87342 -29.94201 -28.10422 -25.95351 -23.96102 -22.93803 -22.53964 -20.08738 -19.03522 -18.30839 -17.78986 -17.00313 -16.54884 -16.49698 -16.08596 -15.98141 -15.29165 -14.94896 -14.77243 -14.52321 -14.17689 -13.97463 -13.71833 -12.99103 -12.81704 -12.58297 -12.48742 -12.33756 -12.18944 -11.85224 -11.40566 -10.86014 -10.40667 -10.29030 -9.17807 -9.03116 -8.35012 -7.91782 -5.95908 0.14348 0.60419 1.46294 1.46850 1.52783 2.02001 2.31446 2.54670 2.91232 3.38762 3.49094 3.85350 4.05286 4.13942 4.20091 4.44879 4.53606 4.70730 4.75795 4.78393 5.06512 5.13179 5.21595 5.26686 5.49495 5.60604 5.77044 5.89919 5.97940 6.17030 6.28831 6.50620 6.65391 6.91305 6.96238 7.14084 7.64886 9.13338 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.007406 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.908737 B = 3779.787850 C = 4137.515485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.475 4.475 8 H 0.048 0.952 9 C 0.097 3.903 10 H 0.030 0.970 11 C 0.090 3.910 12 N -0.844 5.844 13 C -0.132 4.132 14 C 0.032 3.968 15 N -0.581 5.581 16 H 0.429 0.571 17 C 0.106 3.894 18 C -0.167 4.167 19 C 0.100 3.900 20 F -0.143 7.143 21 C -0.192 4.192 22 C -0.039 4.039 23 C -0.138 4.138 24 H 0.253 0.747 25 H 0.005 0.995 26 H 0.059 0.941 27 H 0.335 0.665 28 H 0.338 0.662 29 H 0.184 0.816 30 H 0.155 0.845 31 H 0.145 0.855 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -9.168 -6.617 11.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.078 3.922 10 H 0.048 0.952 11 C -0.041 4.041 12 N -0.373 5.373 13 C -0.139 4.139 14 C -0.092 4.092 15 N -0.186 5.186 16 H 0.268 0.732 17 C -0.004 4.004 18 C -0.189 4.189 19 C 0.079 3.921 20 F -0.122 7.122 21 C -0.212 4.212 22 C -0.057 4.057 23 C -0.143 4.143 24 H 0.062 0.938 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.201 0.799 30 H 0.173 0.827 31 H 0.163 0.837 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.822 -8.436 -6.921 11.063 hybrid contribution -0.256 0.278 -0.210 0.432 sum 1.566 -8.158 -7.132 10.949 Atomic orbital electron populations 1.70015 1.06840 1.26322 1.52828 1.25507 0.95406 1.01530 0.95691 0.85951 0.78512 0.80712 0.78378 1.20255 1.22093 1.19980 1.21022 0.92649 0.90802 1.46911 0.93361 1.17265 0.96732 0.92203 0.86030 0.95183 1.21699 0.99376 0.94448 0.88558 1.58456 1.22116 1.52904 1.03823 1.21183 0.90326 1.03770 0.98578 1.21706 0.99652 1.04285 0.83544 1.41542 1.03693 1.60703 1.12645 0.73153 1.17923 0.84844 1.02691 0.94949 1.19846 0.89961 1.09420 0.99661 1.17151 0.86292 1.03003 0.85620 1.91444 1.67942 1.91823 1.60974 1.20639 1.01135 1.07386 0.92036 1.20203 0.91396 0.95224 0.98927 1.19645 0.94178 1.05924 0.94562 0.93826 0.97721 0.92267 0.85303 0.84942 0.79859 0.82742 0.83702 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.19 12.77 21.45 0.27 -52.91 16 2 C 0.02 0.90 5.45 84.65 0.46 1.36 16 3 Si 0.94 44.32 29.54 68.60 2.03 46.34 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.48 -24.87 7.88 25.60 0.20 -24.67 16 8 H 0.05 2.51 7.82 -2.91 -0.02 2.49 16 9 C 0.10 4.58 2.47 -12.28 -0.03 4.55 16 10 H 0.03 1.62 7.23 -2.39 -0.02 1.60 16 11 C 0.09 3.53 6.00 86.31 0.52 4.05 16 12 N -0.84 -31.42 9.35 -186.72 -1.75 -33.16 16 13 C -0.13 -5.64 5.04 -18.62 -0.09 -5.74 16 14 C 0.03 1.12 11.35 82.98 0.94 2.06 16 15 N -0.58 -17.24 6.07 -187.60 -1.14 -18.38 16 16 H 0.43 8.84 8.96 -92.70 -0.83 8.01 16 17 C 0.11 3.68 7.27 39.03 0.28 3.96 16 18 C -0.17 -5.12 10.05 22.41 0.23 -4.89 16 19 C 0.10 3.23 7.28 22.39 0.16 3.39 16 20 F -0.14 -4.34 17.25 44.97 0.78 -3.56 16 21 C -0.19 -6.59 9.95 22.08 0.22 -6.37 16 22 C -0.04 -1.56 10.05 22.22 0.22 -1.34 16 23 C -0.14 -5.73 6.35 -20.19 -0.13 -5.86 16 24 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 25 H 0.00 0.17 8.14 -2.39 -0.02 0.16 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.33 12.61 8.99 -89.69 -0.81 11.81 16 28 H 0.34 10.04 9.08 -89.69 -0.81 9.23 16 29 H 0.18 5.53 8.06 -2.91 -0.02 5.51 16 30 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -63.14 284.35 1.90 -61.24 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -1.27 Total: 29.94 kcal Atomic # 6 Polarization: -32.49 SS G_CDS: 2.99 Total: -29.50 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -2.61 Total: -104.46 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -63.14 1.90 -61.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.409 kcal (2) G-P(sol) polarization free energy of solvation -63.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds