Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48494 * 109.47181 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 120.00518 * 3 2 1 6 6 H 1.48504 * 109.46984 * 240.00090 * 3 2 1 7 7 C 1.37872 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00560 * 175.13814 * 7 2 1 9 9 C 1.50697 * 120.00047 * 355.13703 * 7 2 1 10 10 H 1.09004 * 109.47153 * 325.10666 * 9 7 2 11 11 C 1.53007 * 109.47297 * 85.10503 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.22472 * 11 9 7 13 13 C 1.50701 * 109.47544 * 205.10328 * 9 7 2 14 14 C 1.34206 * 126.50110 * 299.68966 * 13 9 7 15 15 N 1.36900 * 109.92687 * 179.86414 * 14 13 9 16 16 H 0.96993 * 125.07171 * 180.13056 * 15 14 13 17 17 C 1.37698 * 109.86274 * 0.41027 * 15 14 13 18 18 C 1.39124 * 133.47323 * 179.71025 * 17 15 14 19 19 C 1.37945 * 119.75467 * 180.02562 * 18 17 15 20 20 F 1.35106 * 119.69321 * 180.02562 * 19 18 17 21 21 C 1.39029 * 120.61653 * 0.03945 * 19 18 17 22 22 C 1.36612 * 120.50005 * 359.97438 * 21 19 18 23 23 C 1.39636 * 119.79831 * 0.02562 * 22 21 19 24 24 H 0.96998 * 119.99900 * 174.49878 * 1 2 3 25 25 H 1.09006 * 109.46829 * 305.22676 * 11 9 7 26 26 H 1.08999 * 109.46972 * 65.22426 * 11 9 7 27 27 H 1.00900 * 111.00360 * 56.04425 * 12 11 9 28 28 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 29 29 H 1.07999 * 125.03653 * 0.02562 * 14 13 9 30 30 H 1.08001 * 120.12258 * 0.02562 * 18 17 15 31 31 H 1.07994 * 119.75542 * 179.97438 * 21 19 18 32 32 H 1.07997 * 120.10126 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0798 9 6 1.2552 -2.4968 0.1095 10 1 0.3889 -2.3641 0.7578 11 6 0.7896 -2.9364 -1.2801 12 7 -0.0463 -4.1382 -1.1591 13 6 2.1618 -3.5503 0.6920 14 6 3.3190 -3.9852 0.1696 15 7 3.8649 -4.9448 0.9791 16 1 4.7013 -5.4061 0.8108 17 6 3.0463 -5.1620 2.0648 18 6 3.1196 -6.0116 3.1641 19 6 2.1145 -5.9971 4.1088 20 9 2.1872 -6.8223 5.1761 21 6 1.0272 -5.1414 3.9728 22 6 0.9371 -4.2999 2.9003 23 6 1.9437 -4.2989 1.9326 24 1 -0.4850 -0.8362 -0.0805 25 1 0.2101 -2.1355 -1.7394 26 1 1.6577 -3.1586 -1.9007 27 1 -0.8236 -3.9769 -0.5363 28 1 -0.3662 -4.4489 -2.0642 29 1 3.7563 -3.6288 -0.7514 30 1 3.9603 -6.6801 3.2774 31 1 0.2480 -5.1418 4.7205 32 1 0.0898 -3.6376 2.8013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261038965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = -0.475023 kcal Electronic energy + Delta-G solvation = -17575.486353 eV Core-core repulsion = 14643.181008 eV Total energy + Delta-G solvation = -2932.305345 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.56656 -40.69460 -36.34117 -35.43615 -32.35532 -31.47850 -29.41133 -28.53627 -26.46607 -23.75211 -22.68732 -21.69094 -21.25898 -18.71180 -17.78123 -16.82057 -16.48422 -15.81784 -15.29160 -14.84101 -14.73247 -13.79892 -13.78394 -13.61073 -13.54775 -13.27900 -13.00922 -12.47166 -11.95672 -11.75206 -11.23364 -10.96909 -10.91505 -10.78255 -10.32382 -10.14504 -9.77831 -9.16603 -8.60968 -8.43091 -7.87829 -7.72427 -6.95267 -6.39033 -4.13515 1.43300 1.90117 3.37833 3.43037 3.45566 3.54289 3.61074 4.25364 4.49872 4.72888 5.05962 5.27238 5.31776 5.46728 5.53531 5.65069 5.79629 6.00766 6.21920 6.35175 6.42990 6.50889 6.58431 6.69709 6.88068 7.01488 7.25806 7.29432 7.55527 7.71129 7.85711 8.07351 8.12649 8.22719 8.39539 8.81210 9.57210 10.96252 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.006567 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.096763 B = 4262.646364 C = 4442.656990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.022 3.978 3 Si 1.064 2.936 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.585 4.585 8 H 0.051 0.949 9 C 0.096 3.904 10 H 0.037 0.963 11 C 0.071 3.929 12 N -0.852 5.852 13 C -0.071 4.071 14 C 0.019 3.981 15 N -0.598 5.598 16 H 0.408 0.592 17 C 0.116 3.884 18 C -0.176 4.176 19 C 0.105 3.895 20 F -0.148 7.148 21 C -0.194 4.194 22 C -0.026 4.026 23 C -0.107 4.107 24 H 0.269 0.731 25 H 0.023 0.977 26 H 0.052 0.948 27 H 0.331 0.669 28 H 0.321 0.679 29 H 0.162 0.838 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -9.426 2.106 10.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.182 4.182 3 Si 0.892 3.108 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.624 4.624 8 H 0.069 0.931 9 C 0.076 3.924 10 H 0.055 0.945 11 C -0.060 4.060 12 N -0.379 5.379 13 C -0.077 4.077 14 C -0.103 4.103 15 N -0.201 5.201 16 H 0.243 0.757 17 C 0.007 3.993 18 C -0.198 4.198 19 C 0.085 3.915 20 F -0.127 7.127 21 C -0.214 4.214 22 C -0.045 4.045 23 C -0.113 4.113 24 H 0.080 0.920 25 H 0.041 0.959 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.131 0.869 29 H 0.179 0.821 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.598 -8.149 2.432 9.667 hybrid contribution -0.005 -1.457 -0.438 1.521 sum 4.593 -9.606 1.994 10.832 Atomic orbital electron populations 1.70809 1.06869 1.30783 1.46107 1.25798 0.96463 1.02515 0.93459 0.83611 0.75018 0.75562 0.76579 1.20809 1.21402 1.21463 1.21915 0.94481 0.90920 1.55038 0.93053 1.17445 0.93615 0.90442 0.90861 0.94526 1.22184 0.95272 0.88346 1.00151 1.58944 1.26381 1.37443 1.15170 1.20651 0.96138 0.97984 0.92924 1.21421 0.96694 0.94496 0.97707 1.41619 1.21586 1.36877 1.20000 0.75662 1.17771 0.92798 0.98542 0.90198 1.19601 1.01060 1.03996 0.95101 1.17081 0.96445 0.92704 0.85282 1.91435 1.96539 1.70626 1.54127 1.20446 0.99222 1.00385 1.01378 1.20156 0.97234 0.95873 0.91231 1.19339 0.95182 0.99190 0.97554 0.92019 0.95923 0.92907 0.85773 0.86916 0.82059 0.85892 0.85474 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.96 13.57 55.43 0.75 -25.21 16 2 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 3 Si 1.06 24.24 29.91 -169.99 -5.08 19.16 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.58 -15.34 8.21 -34.44 -0.28 -15.63 16 8 H 0.05 1.35 7.65 -52.48 -0.40 0.95 16 9 C 0.10 2.25 1.92 -92.92 -0.18 2.07 16 10 H 0.04 0.94 7.08 -51.93 -0.37 0.57 16 11 C 0.07 1.51 5.94 -3.82 -0.02 1.48 16 12 N -0.85 -15.44 9.34 -10.37 -0.10 -15.54 16 13 C -0.07 -1.51 4.77 -102.70 -0.49 -2.00 16 14 C 0.02 0.35 11.03 -16.71 -0.18 0.17 16 15 N -0.60 -9.50 6.07 -10.64 -0.06 -9.57 16 16 H 0.41 4.86 8.96 -40.82 -0.37 4.50 16 17 C 0.12 2.06 7.28 -83.99 -0.61 1.45 16 18 C -0.18 -2.80 10.05 -39.36 -0.40 -3.20 16 19 C 0.11 1.71 7.28 -39.40 -0.29 1.43 16 20 F -0.15 -2.32 17.25 2.25 0.04 -2.28 16 21 C -0.19 -3.17 9.95 -39.88 -0.40 -3.56 16 22 C -0.03 -0.48 10.05 -39.65 -0.40 -0.88 16 23 C -0.11 -2.14 6.35 -105.12 -0.67 -2.81 16 24 H 0.27 7.54 6.26 -40.82 -0.26 7.29 16 25 H 0.02 0.53 7.61 -51.93 -0.39 0.13 16 26 H 0.05 1.10 7.87 -51.93 -0.41 0.70 16 27 H 0.33 5.87 8.99 -39.29 -0.35 5.52 16 28 H 0.32 5.02 9.08 -39.29 -0.36 4.66 16 29 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 31 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.13 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 281.45 15.07 4.24 4.24 Total: -1.00 -29.45 281.45 -7.61 -37.06 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.39 Total: 13.11 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -4.01 Total: -20.98 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.59 Total: -50.31 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.28 kcal Atomic # 14 Polarization: 24.24 SS G_CDS: -5.08 Total: 19.16 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.45 -7.61 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.585 kcal (2) G-P(sol) polarization free energy of solvation -29.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds