Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99881 * 2 1 4 4 H 1.48494 * 109.47181 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47056 * 120.00518 * 3 2 1 6 6 H 1.48504 * 109.46984 * 240.00090 * 3 2 1 7 7 C 1.37872 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00560 * 175.13814 * 7 2 1 9 9 C 1.50697 * 120.00047 * 355.13703 * 7 2 1 10 10 H 1.09004 * 109.47153 * 325.10666 * 9 7 2 11 11 C 1.53007 * 109.47297 * 85.10503 * 9 7 2 12 12 N 1.46893 * 109.47421 * 185.22472 * 11 9 7 13 13 C 1.50701 * 109.47544 * 205.10328 * 9 7 2 14 14 C 1.34206 * 126.50110 * 299.68966 * 13 9 7 15 15 N 1.36900 * 109.92687 * 179.86414 * 14 13 9 16 16 H 0.96993 * 125.07171 * 180.13056 * 15 14 13 17 17 C 1.37698 * 109.86274 * 0.41027 * 15 14 13 18 18 C 1.39124 * 133.47323 * 179.71025 * 17 15 14 19 19 C 1.37945 * 119.75467 * 180.02562 * 18 17 15 20 20 F 1.35106 * 119.69321 * 180.02562 * 19 18 17 21 21 C 1.39029 * 120.61653 * 0.03945 * 19 18 17 22 22 C 1.36612 * 120.50005 * 359.97438 * 21 19 18 23 23 C 1.39636 * 119.79831 * 0.02562 * 22 21 19 24 24 H 0.96998 * 119.99900 * 174.49878 * 1 2 3 25 25 H 1.09006 * 109.46829 * 305.22676 * 11 9 7 26 26 H 1.08999 * 109.46972 * 65.22426 * 11 9 7 27 27 H 1.00900 * 111.00360 * 56.04425 * 12 11 9 28 28 H 1.00898 * 111.00500 * 180.02562 * 12 11 9 29 29 H 1.07999 * 125.03653 * 0.02562 * 14 13 9 30 30 H 1.08001 * 120.12258 * 0.02562 * 18 17 15 31 31 H 1.07994 * 119.75542 * 179.97438 * 21 19 18 32 32 H 1.07997 * 120.10126 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0817 -1.1957 -0.0798 9 6 1.2552 -2.4968 0.1095 10 1 0.3889 -2.3641 0.7578 11 6 0.7896 -2.9364 -1.2801 12 7 -0.0463 -4.1382 -1.1591 13 6 2.1618 -3.5503 0.6920 14 6 3.3190 -3.9852 0.1696 15 7 3.8649 -4.9448 0.9791 16 1 4.7013 -5.4061 0.8108 17 6 3.0463 -5.1620 2.0648 18 6 3.1196 -6.0116 3.1641 19 6 2.1145 -5.9971 4.1088 20 9 2.1872 -6.8223 5.1761 21 6 1.0272 -5.1414 3.9728 22 6 0.9371 -4.2999 2.9003 23 6 1.9437 -4.2989 1.9326 24 1 -0.4850 -0.8362 -0.0805 25 1 0.2101 -2.1355 -1.7394 26 1 1.6577 -3.1586 -1.9007 27 1 -0.8236 -3.9769 -0.5363 28 1 -0.3662 -4.4489 -2.0642 29 1 3.7563 -3.6288 -0.7514 30 1 3.9603 -6.6801 3.2774 31 1 0.2480 -5.1418 4.7205 32 1 0.0898 -3.6376 2.8013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261038965.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = -19.309638 kcal Electronic energy + Delta-G solvation = -17576.303084 eV Core-core repulsion = 14643.181008 eV Total energy + Delta-G solvation = -2933.122075 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.82083 -42.08245 -37.79873 -37.07238 -34.22951 -32.93578 -30.87145 -29.98299 -28.07183 -25.70702 -24.02660 -23.30589 -22.66832 -20.32395 -19.22989 -18.50338 -17.95024 -17.18175 -16.55812 -16.33934 -16.12163 -15.61874 -15.34550 -15.14597 -15.07323 -14.73776 -14.46945 -13.82763 -13.73830 -13.41722 -12.90425 -12.63951 -12.35324 -12.24156 -11.95355 -11.86306 -11.55398 -10.82466 -10.48175 -10.27156 -9.46756 -9.08229 -8.60377 -8.30030 -6.24980 0.08056 0.55792 1.56195 1.62711 1.81614 1.96062 2.24437 2.61462 2.85826 3.26310 3.44205 3.77975 3.95168 4.00973 4.12614 4.31099 4.45881 4.54938 4.65783 4.78355 4.97570 4.98740 5.11841 5.19505 5.29329 5.49316 5.62176 5.83584 6.02235 6.07970 6.23262 6.32799 6.38864 6.66762 6.78181 6.84952 7.52998 8.85014 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.024837 B = 0.006567 C = 0.006301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.096763 B = 4262.646364 C = 4442.656990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.028 4.028 3 Si 1.106 2.894 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.590 4.590 8 H 0.049 0.951 9 C 0.101 3.899 10 H 0.003 0.997 11 C 0.088 3.912 12 N -0.843 5.843 13 C -0.115 4.115 14 C 0.035 3.965 15 N -0.579 5.579 16 H 0.429 0.571 17 C 0.110 3.890 18 C -0.164 4.164 19 C 0.101 3.899 20 F -0.142 7.142 21 C -0.185 4.185 22 C -0.049 4.049 23 C -0.137 4.137 24 H 0.259 0.741 25 H -0.006 1.006 26 H 0.057 0.943 27 H 0.333 0.667 28 H 0.338 0.662 29 H 0.177 0.823 30 H 0.156 0.844 31 H 0.149 0.851 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.822 -10.819 2.444 12.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.226 4.226 3 Si 0.929 3.071 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.628 4.628 8 H 0.067 0.933 9 C 0.081 3.919 10 H 0.022 0.978 11 C -0.043 4.043 12 N -0.371 5.371 13 C -0.121 4.121 14 C -0.090 4.090 15 N -0.184 5.184 16 H 0.269 0.731 17 C 0.000 4.000 18 C -0.185 4.185 19 C 0.081 3.919 20 F -0.121 7.121 21 C -0.205 4.205 22 C -0.067 4.067 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.012 0.988 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.194 0.806 30 H 0.173 0.827 31 H 0.167 0.833 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.436 -9.595 2.765 11.880 hybrid contribution -0.562 -1.141 -0.491 1.363 sum 5.875 -10.736 2.274 12.448 Atomic orbital electron populations 1.70902 1.07819 1.30280 1.48677 1.27038 0.96570 1.05910 0.93118 0.83061 0.74247 0.72081 0.77687 1.21419 1.20383 1.19327 1.22268 0.94523 0.92365 1.53673 0.93294 1.17223 0.92762 0.90571 0.91320 0.97841 1.21830 0.95404 0.88478 0.98633 1.58833 1.26413 1.35582 1.16309 1.20481 0.97511 0.99362 0.94731 1.21556 0.95669 0.93913 0.97817 1.41489 1.22000 1.36015 1.18864 0.73087 1.17890 0.92408 0.98572 0.91087 1.19874 1.01605 1.03306 0.93752 1.17150 0.96493 0.92696 0.85590 1.91457 1.96494 1.70340 1.53785 1.20650 0.99764 0.99218 1.00831 1.20185 0.97286 0.97022 0.92246 1.19568 0.96752 1.00212 0.97706 0.93101 0.98783 0.92403 0.85550 0.84997 0.80590 0.82668 0.83298 0.86337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.39 13.57 21.45 0.29 -55.10 16 2 C -0.03 -1.55 5.45 84.65 0.46 -1.09 16 3 Si 1.11 49.05 29.91 68.60 2.05 51.10 16 4 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.59 -31.43 8.21 25.60 0.21 -31.22 16 8 H 0.05 2.57 7.65 -2.91 -0.02 2.54 16 9 C 0.10 4.86 1.92 -12.28 -0.02 4.84 16 10 H 0.00 0.18 7.08 -2.39 -0.02 0.17 16 11 C 0.09 3.79 5.94 86.31 0.51 4.30 16 12 N -0.84 -30.56 9.34 -186.72 -1.74 -32.30 16 13 C -0.11 -4.86 4.77 -18.62 -0.09 -4.95 16 14 C 0.03 1.22 11.03 82.98 0.91 2.14 16 15 N -0.58 -16.83 6.07 -187.59 -1.14 -17.97 16 16 H 0.43 8.67 8.96 -92.71 -0.83 7.84 16 17 C 0.11 3.66 7.28 39.02 0.28 3.94 16 18 C -0.16 -4.70 10.05 22.41 0.23 -4.47 16 19 C 0.10 3.03 7.28 22.39 0.16 3.19 16 20 F -0.14 -4.01 17.25 44.97 0.78 -3.23 16 21 C -0.18 -5.77 9.95 22.08 0.22 -5.55 16 22 C -0.05 -1.80 10.05 22.23 0.22 -1.57 16 23 C -0.14 -5.43 6.35 -20.19 -0.13 -5.56 16 24 H 0.26 15.27 6.26 -92.71 -0.58 14.69 16 25 H -0.01 -0.29 7.61 -2.38 -0.02 -0.31 16 26 H 0.06 2.41 7.87 -2.39 -0.02 2.39 16 27 H 0.33 12.08 8.99 -89.69 -0.81 11.27 16 28 H 0.34 10.33 9.08 -89.70 -0.81 9.51 16 29 H 0.18 5.61 8.06 -2.91 -0.02 5.59 16 30 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.15 3.88 8.06 -2.91 -0.02 3.85 16 32 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -63.83 281.45 2.13 -61.70 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: -1.08 Total: 31.81 kcal Atomic # 6 Polarization: -38.98 SS G_CDS: 2.97 Total: -36.00 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -2.59 Total: -105.37 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.78 Total: -3.23 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 2.05 Total: 51.10 kcal Total: -63.83 2.13 -61.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261038965.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.389 kcal (2) G-P(sol) polarization free energy of solvation -63.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds