Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48497 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47042 * 300.00487 * 3 2 1 6 6 H 1.48498 * 109.47137 * 60.00561 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46959 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46874 * 55.00000 * 10 9 7 12 12 N 1.46897 * 109.46884 * 295.00255 * 10 9 7 13 13 C 1.50698 * 109.46794 * 174.99864 * 10 9 7 14 14 C 1.38845 * 119.81689 * 100.00508 * 13 10 9 15 15 C 1.37707 * 120.68743 * 179.97438 * 14 13 10 16 16 C 1.39168 * 119.96593 * 0.02562 * 15 14 13 17 17 N 1.37705 * 133.40669 * 180.02562 * 16 15 14 18 18 H 0.97004 * 125.05785 * 359.92933 * 17 16 15 19 19 C 1.36876 * 109.87438 * 179.97438 * 17 16 15 20 20 C 1.34214 * 109.91229 * 0.02562 * 19 17 16 21 21 C 1.40589 * 119.44682 * 359.97355 * 16 15 14 22 22 C 1.37823 * 119.82693 * 279.97714 * 13 10 9 23 23 F 1.35100 * 120.19539 * 0.02562 * 22 13 10 24 24 H 0.97001 * 119.99924 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46846 * 60.00420 * 9 7 2 26 26 H 1.08999 * 109.47192 * 300.00432 * 9 7 2 27 27 H 1.00901 * 110.99995 * 299.99429 * 12 10 9 28 28 H 1.00901 * 111.00417 * 63.95384 * 12 10 9 29 29 H 1.07998 * 119.65544 * 359.71453 * 14 13 10 30 30 H 1.07996 * 120.01904 * 179.97438 * 15 14 13 31 31 H 1.07999 * 125.04324 * 179.97438 * 19 17 16 32 32 H 1.07999 * 126.50134 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 0.8413 12 7 3.0085 -3.6538 -1.2557 13 6 1.4960 -4.9636 0.1233 14 6 1.2551 -5.7319 -1.0078 15 6 0.5727 -6.9244 -0.9152 16 6 0.1163 -7.3698 0.3218 17 7 -0.5768 -8.4883 0.7279 18 1 -0.8777 -9.2006 0.1421 19 6 -0.7787 -8.4448 2.0810 20 6 -0.2385 -7.3256 2.5880 21 6 0.3591 -6.5936 1.4685 22 6 1.0540 -5.3852 1.3588 23 9 1.2902 -4.6351 2.4573 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.3963 -3.7517 -2.0518 28 1 3.5702 -2.8190 -1.3320 29 1 1.6030 -5.3887 -1.9709 30 1 0.3909 -7.5132 -1.8021 31 1 -1.2966 -9.1987 2.6553 32 1 -0.2431 -7.0226 3.6246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261039799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = 4.177637 kcal Electronic energy + Delta-G solvation = -17473.423536 eV Core-core repulsion = 14541.319945 eV Total energy + Delta-G solvation = -2932.103591 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.21442 -40.95801 -37.46876 -34.57607 -32.33205 -31.46997 -29.01147 -28.46761 -27.75335 -24.36931 -22.48332 -21.83927 -20.64557 -19.48214 -18.20314 -16.85457 -16.49076 -15.33415 -15.13005 -15.00317 -14.69151 -14.52060 -13.93814 -13.58315 -13.28780 -13.05513 -12.64509 -12.43739 -12.12501 -11.94939 -11.26005 -11.19199 -10.94693 -10.78060 -10.52745 -10.21265 -9.85615 -9.39281 -9.10042 -8.42299 -8.04689 -7.73204 -7.27915 -6.02677 -4.06855 1.28615 1.82895 2.80857 3.17543 3.29825 3.37707 3.41370 4.05249 4.43576 4.70136 4.83411 5.10570 5.25699 5.33307 5.35438 5.46020 5.58868 5.85244 5.97319 6.03926 6.31981 6.47995 6.64309 6.75487 6.78591 6.82024 6.97208 7.37893 7.54350 7.58552 7.63586 7.91265 8.08689 8.24576 8.37882 8.99932 9.57813 11.08161 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.005598 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.842057 B = 5000.947815 C = 5315.308676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.001 3.999 10 C 0.132 3.868 11 H 0.079 0.921 12 N -0.839 5.839 13 C -0.112 4.112 14 C -0.053 4.053 15 C -0.150 4.150 16 C 0.111 3.889 17 N -0.598 5.598 18 H 0.414 0.586 19 C 0.040 3.960 20 C -0.192 4.192 21 C -0.146 4.146 22 C 0.143 3.857 23 F -0.132 7.132 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.021 0.979 27 H 0.328 0.672 28 H 0.348 0.652 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.169 0.831 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -16.721 0.040 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.076 0.924 9 C -0.037 4.037 10 C 0.020 3.980 11 H 0.097 0.903 12 N -0.368 5.368 13 C -0.115 4.115 14 C -0.073 4.073 15 C -0.171 4.171 16 C 0.004 3.996 17 N -0.202 5.202 18 H 0.250 0.750 19 C -0.086 4.086 20 C -0.217 4.217 21 C -0.151 4.151 22 C 0.122 3.878 23 F -0.110 7.110 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.140 0.860 28 H 0.161 0.839 29 H 0.155 0.845 30 H 0.139 0.861 31 H 0.186 0.814 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.899 -17.334 0.336 17.360 hybrid contribution -0.431 1.649 -0.168 1.713 sum -1.331 -15.685 0.168 15.742 Atomic orbital electron populations 1.69990 1.06117 1.26557 1.50339 1.25018 0.94810 0.99287 0.95124 0.86531 0.80136 0.83745 0.77562 1.19629 1.21077 1.21000 1.21190 0.92917 0.90774 1.51215 0.92432 1.19786 0.94422 0.91592 0.97938 1.20354 0.94602 0.90047 0.92978 0.90296 1.59277 1.27862 1.45928 1.03748 1.19972 1.01629 0.98668 0.91185 1.20532 0.95904 0.92410 0.98451 1.19967 1.04411 0.98734 0.94014 1.17928 0.98668 0.88542 0.94444 1.41704 1.50545 1.20221 1.07750 0.74958 1.21700 1.03642 1.00176 0.83038 1.21607 1.05969 0.95935 0.98171 1.19018 1.05643 0.95871 0.94551 1.16835 0.99271 0.88712 0.82941 1.91474 1.92267 1.75291 1.51966 0.93007 0.96468 0.96017 0.85994 0.83859 0.84495 0.86141 0.81379 0.83645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.52 8.55 -34.44 -0.29 -14.81 16 8 H 0.06 1.54 7.14 -52.49 -0.37 1.16 16 9 C 0.00 0.03 4.60 -27.88 -0.13 -0.10 16 10 C 0.13 2.84 2.70 -68.87 -0.19 2.65 16 11 H 0.08 1.80 7.93 -51.93 -0.41 1.39 16 12 N -0.84 -15.78 8.67 -5.66 -0.05 -15.83 16 13 C -0.11 -2.20 5.09 -104.55 -0.53 -2.74 16 14 C -0.05 -0.89 9.22 -39.55 -0.36 -1.25 16 15 C -0.15 -2.16 10.07 -39.43 -0.40 -2.56 16 16 C 0.11 1.65 7.27 -84.00 -0.61 1.04 16 17 N -0.60 -6.60 6.07 -10.65 -0.06 -6.66 16 18 H 0.41 3.02 8.96 -40.82 -0.37 2.65 16 19 C 0.04 0.43 11.82 -16.72 -0.20 0.23 16 20 C -0.19 -2.71 11.08 -37.67 -0.42 -3.13 16 21 C -0.15 -2.53 6.36 -105.09 -0.67 -3.20 16 22 C 0.14 2.85 7.27 -39.14 -0.28 2.56 16 23 F -0.13 -2.81 16.65 2.25 0.04 -2.78 16 24 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.33 5.74 7.27 -39.29 -0.29 5.45 16 28 H 0.35 6.67 7.90 -39.29 -0.31 6.36 16 29 H 0.14 2.04 6.21 -52.49 -0.33 1.71 16 30 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 279.19 15.07 4.21 4.21 Total: -1.00 -32.56 279.19 -7.65 -40.21 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -3.32 Total: 10.17 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -4.18 Total: -19.70 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.62 Total: -48.70 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.56 -7.65 -40.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.389 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds