Wall clock time and date at job start Mon Mar 30 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48497 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47042 * 300.00487 * 3 2 1 6 6 H 1.48498 * 109.47137 * 60.00561 * 3 2 1 7 7 C 1.37877 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99572 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99871 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46959 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46874 * 55.00000 * 10 9 7 12 12 N 1.46897 * 109.46884 * 295.00255 * 10 9 7 13 13 C 1.50698 * 109.46794 * 174.99864 * 10 9 7 14 14 C 1.38845 * 119.81689 * 100.00508 * 13 10 9 15 15 C 1.37707 * 120.68743 * 179.97438 * 14 13 10 16 16 C 1.39168 * 119.96593 * 0.02562 * 15 14 13 17 17 N 1.37705 * 133.40669 * 180.02562 * 16 15 14 18 18 H 0.97004 * 125.05785 * 359.92933 * 17 16 15 19 19 C 1.36876 * 109.87438 * 179.97438 * 17 16 15 20 20 C 1.34214 * 109.91229 * 0.02562 * 19 17 16 21 21 C 1.40589 * 119.44682 * 359.97355 * 16 15 14 22 22 C 1.37823 * 119.82693 * 279.97714 * 13 10 9 23 23 F 1.35100 * 120.19539 * 0.02562 * 22 13 10 24 24 H 0.97001 * 119.99924 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46846 * 60.00420 * 9 7 2 26 26 H 1.08999 * 109.47192 * 300.00432 * 9 7 2 27 27 H 1.00901 * 110.99995 * 299.99429 * 12 10 9 28 28 H 1.00901 * 111.00417 * 63.95384 * 12 10 9 29 29 H 1.07998 * 119.65544 * 359.71453 * 14 13 10 30 30 H 1.07996 * 120.01904 * 179.97438 * 15 14 13 31 31 H 1.07999 * 125.04324 * 179.97438 * 19 17 16 32 32 H 1.07999 * 126.50134 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 1 2.9295 -3.5551 0.8413 12 7 3.0085 -3.6538 -1.2557 13 6 1.4960 -4.9636 0.1233 14 6 1.2551 -5.7319 -1.0078 15 6 0.5727 -6.9244 -0.9152 16 6 0.1163 -7.3698 0.3218 17 7 -0.5768 -8.4883 0.7279 18 1 -0.8777 -9.2006 0.1421 19 6 -0.7787 -8.4448 2.0810 20 6 -0.2385 -7.3256 2.5880 21 6 0.3591 -6.5936 1.4685 22 6 1.0540 -5.3852 1.3588 23 9 1.2902 -4.6351 2.4573 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 2.3963 -3.7517 -2.0518 28 1 3.5702 -2.8190 -1.3320 29 1 1.6030 -5.3887 -1.9709 30 1 0.3909 -7.5132 -1.8021 31 1 -1.2966 -9.1987 2.6553 32 1 -0.2431 -7.0226 3.6246 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261039799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:54 Heat of formation + Delta-G solvation = -18.535070 kcal Electronic energy + Delta-G solvation = -17474.408433 eV Core-core repulsion = 14541.319945 eV Total energy + Delta-G solvation = -2933.088488 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.75513 -42.05865 -38.90940 -36.19865 -34.38035 -32.60768 -30.38078 -29.97443 -29.36387 -26.20735 -23.88304 -23.34804 -21.78168 -20.98306 -19.39927 -18.80232 -17.90962 -16.90532 -16.73230 -16.46015 -16.32436 -15.90416 -15.12731 -15.07844 -14.73187 -14.50815 -14.20052 -14.13227 -13.71977 -13.42352 -12.97913 -12.92351 -12.52732 -12.26764 -12.20996 -12.03265 -11.74372 -11.17969 -10.64360 -10.56841 -9.54761 -9.10616 -8.53433 -8.22461 -6.35782 0.05468 0.52811 1.38198 1.39414 1.52611 1.78464 2.22985 2.38076 2.75490 3.09832 3.45091 3.60994 3.91306 4.09353 4.15079 4.28229 4.32332 4.49478 4.75898 4.82120 4.84208 4.97277 5.19948 5.27931 5.36998 5.47238 5.59343 5.66384 5.71105 5.75202 6.12355 6.15692 6.36772 6.72241 6.76744 6.80362 7.34141 8.88966 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.037085 B = 0.005598 C = 0.005267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.842057 B = 5000.947815 C = 5315.308676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.537 4.537 8 H 0.066 0.934 9 C 0.014 3.986 10 C 0.147 3.853 11 H 0.057 0.943 12 N -0.821 5.821 13 C -0.135 4.135 14 C -0.072 4.072 15 C -0.126 4.126 16 C 0.102 3.898 17 N -0.578 5.578 18 H 0.437 0.563 19 C 0.085 3.915 20 C -0.241 4.241 21 C -0.170 4.170 22 C 0.098 3.902 23 F -0.156 7.156 24 H 0.263 0.737 25 H -0.005 1.005 26 H -0.022 1.022 27 H 0.338 0.662 28 H 0.346 0.654 29 H 0.152 0.848 30 H 0.165 0.835 31 H 0.224 0.776 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -19.026 -1.038 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.084 0.916 9 C -0.024 4.024 10 C 0.035 3.965 11 H 0.075 0.925 12 N -0.350 5.350 13 C -0.137 4.137 14 C -0.092 4.092 15 C -0.146 4.146 16 C -0.006 4.006 17 N -0.183 5.183 18 H 0.278 0.722 19 C -0.042 4.042 20 C -0.265 4.265 21 C -0.175 4.175 22 C 0.078 3.922 23 F -0.135 7.135 24 H 0.072 0.928 25 H 0.014 0.986 26 H -0.004 1.004 27 H 0.151 0.849 28 H 0.160 0.840 29 H 0.169 0.831 30 H 0.182 0.818 31 H 0.240 0.760 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.094 -19.682 -0.774 19.728 hybrid contribution -0.475 2.187 0.196 2.247 sum -1.569 -17.495 -0.578 17.575 Atomic orbital electron populations 1.70137 1.08021 1.27719 1.51463 1.26001 0.95685 1.03476 0.94535 0.85348 0.79211 0.78540 0.77629 1.18196 1.20155 1.20903 1.21579 0.93483 0.91642 1.50738 0.91584 1.19620 0.94513 0.93641 0.94671 1.19942 0.93239 0.89913 0.93416 0.92500 1.59244 1.27263 1.45509 1.03027 1.19925 1.02835 0.98410 0.92541 1.20707 0.97265 0.93391 0.97801 1.20362 1.01400 0.97541 0.95341 1.18093 0.99084 0.89511 0.93900 1.41767 1.48757 1.19393 1.08350 0.72167 1.22457 0.99979 0.99088 0.82697 1.21857 1.08778 0.97737 0.98136 1.19428 1.05480 0.95389 0.97228 1.17298 1.01880 0.90383 0.82613 1.91390 1.92811 1.76191 1.53069 0.92812 0.98631 1.00377 0.84854 0.84046 0.83092 0.81767 0.75961 0.83489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.32 13.29 21.45 0.28 -58.04 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 7 C -0.54 -30.82 8.55 25.60 0.22 -30.60 16 8 H 0.07 3.60 7.14 -2.91 -0.02 3.58 16 9 C 0.01 0.79 4.60 29.85 0.14 0.93 16 10 C 0.15 6.70 2.70 44.17 0.12 6.82 16 11 H 0.06 2.79 7.93 -2.39 -0.02 2.78 16 12 N -0.82 -31.41 8.67 -171.81 -1.49 -32.90 16 13 C -0.13 -5.55 5.09 -19.82 -0.10 -5.65 16 14 C -0.07 -2.36 9.22 22.29 0.21 -2.15 16 15 C -0.13 -3.30 10.07 22.37 0.23 -3.07 16 16 C 0.10 2.82 7.27 39.02 0.28 3.10 16 17 N -0.58 -10.20 6.07 -187.61 -1.14 -11.34 16 18 H 0.44 3.91 8.96 -92.71 -0.83 3.08 16 19 C 0.08 1.46 11.82 82.99 0.98 2.45 16 20 C -0.24 -6.58 11.08 23.51 0.26 -6.31 16 21 C -0.17 -5.94 6.36 -20.17 -0.13 -6.07 16 22 C 0.10 4.18 7.27 22.56 0.16 4.34 16 23 F -0.16 -7.34 16.65 44.97 0.75 -6.59 16 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 26 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 27 H 0.34 11.85 7.27 -89.69 -0.65 11.20 16 28 H 0.35 13.42 7.90 -89.69 -0.71 12.71 16 29 H 0.15 4.33 6.21 -2.91 -0.02 4.32 16 30 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 31 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -75.94 279.19 2.25 -73.69 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: -1.01 Total: 23.89 kcal Atomic # 6 Polarization: -38.54 SS G_CDS: 2.83 Total: -35.71 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -2.34 Total: -102.27 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.75 Total: -6.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -75.94 2.25 -73.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.158 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds