Wall clock time and date at job start Mon Mar 30 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.50698 * 109.47027 * 119.99855 * 2 1 3 5 5 H 1.08000 * 119.99892 * 120.00669 * 4 2 1 6 6 C 1.37876 * 120.00172 * 299.99593 * 4 2 1 7 7 N 1.31519 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47154 * 60.00395 * 8 6 4 10 10 H 1.48504 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47520 * 300.00595 * 8 6 4 12 12 C 1.50694 * 109.47401 * 239.99940 * 2 1 3 13 13 C 1.37815 * 119.47471 * 305.92476 * 12 2 1 14 14 C 1.38293 * 120.01117 * 180.29100 * 13 12 2 15 15 C 1.37790 * 119.51713 * 359.75587 * 14 13 12 16 16 C 1.39585 * 120.61833 * 0.50687 * 15 14 13 17 17 C 1.38215 * 119.97350 * 359.20247 * 16 15 14 18 18 C 1.50042 * 124.73575 * 181.84746 * 17 16 15 19 19 C 1.51881 * 113.55471 * 336.65162 * 18 17 16 20 20 C 1.53524 * 108.98423 * 60.57834 * 19 18 17 21 21 S 1.76461 * 117.72503 * 178.99686 * 16 15 14 22 22 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47594 * 300.00310 * 1 2 3 24 24 H 1.09002 * 109.47453 * 60.00444 * 1 2 3 25 25 H 0.96997 * 120.00084 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.98975 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.24090 * 179.97438 * 14 13 12 28 28 H 1.08007 * 119.68718 * 180.26788 * 15 14 13 29 29 H 1.08997 * 108.67035 * 97.70641 * 18 17 16 30 30 H 1.09004 * 108.66809 * 215.60299 * 18 17 16 31 31 H 1.09005 * 109.54728 * 300.73014 * 19 18 17 32 32 H 1.09000 * 109.63716 * 180.48428 * 19 18 17 33 33 H 1.08998 * 109.88331 * 167.98166 * 20 19 18 34 34 H 1.08994 * 109.88704 * 46.89216 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0079 9 1 3.8075 -1.1188 4.0077 10 1 1.8269 -0.4197 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2304 13 6 1.5947 -1.9888 -1.5015 14 6 2.0532 -2.6533 -2.6243 15 6 2.9437 -2.0259 -3.4681 16 6 3.3931 -0.7332 -3.1936 17 6 2.9318 -0.0647 -2.0753 18 6 3.3117 1.3375 -1.7002 19 6 4.6355 1.7871 -2.2938 20 6 4.5389 1.7370 -3.8251 21 16 4.5535 -0.0129 -4.3110 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7082 1.1610 3.4843 26 1 0.8969 -2.4733 -0.8346 27 1 1.7131 -3.6554 -2.8401 28 1 3.3002 -2.5407 -4.3481 29 1 2.5286 2.0144 -2.0415 30 1 3.3764 1.4028 -0.6140 31 1 5.4309 1.1225 -1.9565 32 1 4.8524 2.8067 -1.9751 33 1 5.3918 2.2518 -4.2675 34 1 3.6111 2.2052 -4.1536 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:04 Heat of formation + Delta-G solvation = 5.368175 kcal Electronic energy + Delta-G solvation = -15992.359225 eV Core-core repulsion = 13594.227685 eV Total energy + Delta-G solvation = -2398.131540 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.15855 -35.17556 -34.45063 -31.54489 -30.27594 -28.29914 -26.52265 -25.17388 -22.91661 -22.47161 -20.38939 -19.38995 -16.78305 -16.29585 -15.36874 -15.17455 -14.96720 -14.55345 -13.71153 -13.30942 -13.06034 -12.86052 -12.56189 -12.30837 -12.12204 -11.65639 -11.32340 -11.14347 -10.99514 -10.89099 -10.75099 -10.41262 -10.24196 -10.00165 -9.91106 -9.32172 -9.06126 -8.93037 -8.37914 -7.77109 -7.00229 -6.05497 -4.12228 1.79381 1.95373 2.04225 2.69399 3.28677 3.33270 3.36788 4.29563 4.44456 4.90738 4.96266 5.18217 5.25202 5.44350 5.49165 5.60770 5.73601 5.86161 5.99764 6.02931 6.24433 6.26567 6.38455 6.60520 6.65104 6.80212 6.85753 7.00785 7.13595 7.16134 7.31710 7.61933 7.69038 7.92060 8.04726 8.34677 8.90179 9.52461 10.99826 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.007228 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.801723 B = 3873.046418 C = 4272.204839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.064 3.936 3 H 0.045 0.955 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.021 4.021 13 C -0.113 4.113 14 C -0.114 4.114 15 C -0.127 4.127 16 C -0.077 4.077 17 C -0.087 4.087 18 C -0.091 4.091 19 C -0.120 4.120 20 C -0.098 4.098 21 S -0.156 6.156 22 H 0.029 0.971 23 H 0.086 0.914 24 H 0.007 0.993 25 H 0.262 0.738 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.169 0.368 -10.277 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.063 0.937 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.023 4.023 13 C -0.133 4.133 14 C -0.133 4.133 15 C -0.150 4.150 16 C -0.189 4.189 17 C -0.092 4.092 18 C -0.128 4.128 19 C -0.159 4.159 20 C -0.247 4.247 21 S 0.085 5.915 22 H 0.048 0.952 23 H 0.104 0.896 24 H 0.026 0.974 25 H 0.071 0.929 26 H 0.142 0.858 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.796 0.075 -11.059 12.054 hybrid contribution -0.463 -0.027 1.840 1.898 sum 4.333 0.048 -9.219 10.186 Atomic orbital electron populations 1.21807 0.97688 0.99349 1.00227 1.18082 0.92891 0.96047 0.88447 0.93717 1.21044 1.31262 1.12427 0.89741 0.92576 1.24938 0.95012 0.94992 0.98877 1.69869 1.36558 1.22860 1.23578 0.86652 0.79273 0.79836 0.82256 1.20251 1.21260 1.20233 1.20728 0.92443 0.93945 0.95175 1.21004 1.00654 0.94930 0.96724 1.20940 0.97814 0.99255 0.95340 1.20594 1.00081 0.93857 1.00493 1.21081 1.01970 0.97982 0.97901 1.19470 0.99390 0.96382 0.93996 1.20352 0.96054 0.92657 1.03689 1.21634 0.99200 1.02559 0.92490 1.23713 1.05756 0.95012 1.00190 1.85107 1.53736 1.06528 1.46146 0.95223 0.89577 0.97358 0.92857 0.85833 0.86504 0.86813 0.91118 0.87863 0.90523 0.90321 0.87840 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 8.71 37.16 0.32 -2.81 16 2 C 0.06 1.53 2.07 -92.93 -0.19 1.34 16 3 H 0.05 1.12 5.34 -51.93 -0.28 0.85 16 4 C -0.51 -13.45 8.31 -34.44 -0.29 -13.74 16 5 H 0.06 1.51 7.72 -52.49 -0.41 1.11 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 C -0.02 -0.45 4.75 -104.39 -0.50 -0.95 16 13 C -0.11 -2.26 8.85 -39.72 -0.35 -2.62 16 14 C -0.11 -1.97 10.06 -39.73 -0.40 -2.37 16 15 C -0.13 -2.20 9.65 -39.24 -0.38 -2.58 16 16 C -0.08 -1.41 6.05 -39.09 -0.24 -1.64 16 17 C -0.09 -1.71 5.77 -104.56 -0.60 -2.31 16 18 C -0.09 -1.59 4.37 -28.77 -0.13 -1.72 16 19 C -0.12 -1.69 5.84 -27.03 -0.16 -1.85 16 20 C -0.10 -1.26 6.53 37.43 0.24 -1.02 16 21 S -0.16 -2.39 21.99 -107.50 -2.36 -4.75 16 22 H 0.03 0.66 7.03 -51.93 -0.36 0.30 16 23 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.12 2.46 7.18 -52.49 -0.38 2.08 16 27 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 28 H 0.11 1.72 8.05 -52.48 -0.42 1.29 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.10 2.04 6.12 -51.93 -0.32 1.72 16 31 H 0.08 1.14 8.03 -51.93 -0.42 0.73 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.09 8.08 -51.93 -0.42 0.67 16 LS Contribution 282.98 15.07 4.26 4.26 Total: -1.00 -27.60 282.98 -9.81 -37.41 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.56 Total: 1.74 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -2.75 Total: -30.66 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.63 Total: -23.90 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.36 Total: -4.75 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.60 -9.81 -37.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.778 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds