Wall clock time and date at job start Mon Mar 30 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47072 * 2 1 4 4 C 1.50698 * 109.47027 * 119.99855 * 2 1 3 5 5 H 1.08000 * 119.99892 * 120.00669 * 4 2 1 6 6 C 1.37876 * 120.00172 * 299.99593 * 4 2 1 7 7 N 1.31519 * 119.99900 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00192 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47154 * 60.00395 * 8 6 4 10 10 H 1.48504 * 109.47183 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47520 * 300.00595 * 8 6 4 12 12 C 1.50694 * 109.47401 * 239.99940 * 2 1 3 13 13 C 1.37815 * 119.47471 * 305.92476 * 12 2 1 14 14 C 1.38293 * 120.01117 * 180.29100 * 13 12 2 15 15 C 1.37790 * 119.51713 * 359.75587 * 14 13 12 16 16 C 1.39585 * 120.61833 * 0.50687 * 15 14 13 17 17 C 1.38215 * 119.97350 * 359.20247 * 16 15 14 18 18 C 1.50042 * 124.73575 * 181.84746 * 17 16 15 19 19 C 1.51881 * 113.55471 * 336.65162 * 18 17 16 20 20 C 1.53524 * 108.98423 * 60.57834 * 19 18 17 21 21 S 1.76461 * 117.72503 * 178.99686 * 16 15 14 22 22 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47594 * 300.00310 * 1 2 3 24 24 H 1.09002 * 109.47453 * 60.00444 * 1 2 3 25 25 H 0.96997 * 120.00084 * 179.97438 * 7 6 4 26 26 H 1.08000 * 119.98975 * 0.02562 * 13 12 2 27 27 H 1.08002 * 120.24090 * 179.97438 * 14 13 12 28 28 H 1.08007 * 119.68718 * 180.26788 * 15 14 13 29 29 H 1.08997 * 108.67035 * 97.70641 * 18 17 16 30 30 H 1.09004 * 108.66809 * 215.60299 * 18 17 16 31 31 H 1.09005 * 109.54728 * 300.73014 * 19 18 17 32 32 H 1.09000 * 109.63716 * 180.48428 * 19 18 17 33 33 H 1.08998 * 109.88331 * 167.98166 * 20 19 18 34 34 H 1.08994 * 109.88704 * 46.89216 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1194 4.0079 9 1 3.8075 -1.1188 4.0077 10 1 1.8269 -0.4197 5.2204 11 1 1.8281 -2.5197 4.0082 12 6 2.0323 -0.7104 -1.2304 13 6 1.5947 -1.9888 -1.5015 14 6 2.0532 -2.6533 -2.6243 15 6 2.9437 -2.0259 -3.4681 16 6 3.3931 -0.7332 -3.1936 17 6 2.9318 -0.0647 -2.0753 18 6 3.3117 1.3375 -1.7002 19 6 4.6355 1.7871 -2.2938 20 6 4.5389 1.7370 -3.8251 21 16 4.5535 -0.0129 -4.3110 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7082 1.1610 3.4843 26 1 0.8969 -2.4733 -0.8346 27 1 1.7131 -3.6554 -2.8401 28 1 3.3002 -2.5407 -4.3481 29 1 2.5286 2.0144 -2.0415 30 1 3.3764 1.4028 -0.6140 31 1 5.4309 1.1225 -1.9565 32 1 4.8524 2.8067 -1.9751 33 1 5.3918 2.2518 -4.2675 34 1 3.6111 2.2052 -4.1536 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045556.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:04 Heat of formation + Delta-G solvation = -6.947292 kcal Electronic energy + Delta-G solvation = -15992.893264 eV Core-core repulsion = 13594.227685 eV Total energy + Delta-G solvation = -2398.665579 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62986 -36.42985 -36.28456 -33.40851 -31.60041 -29.95750 -27.80700 -27.22044 -24.47847 -23.83012 -21.89576 -20.90197 -18.41948 -18.00143 -16.75798 -16.65383 -16.53353 -16.14408 -15.04616 -14.79889 -14.56659 -14.35458 -14.06853 -13.64807 -13.50814 -13.39989 -12.92452 -12.87846 -12.81574 -12.47545 -12.27359 -12.20474 -11.87103 -11.50676 -11.44819 -10.99901 -10.78101 -10.42909 -10.32930 -9.30574 -8.26378 -8.10183 -6.23504 0.38657 0.57237 0.73794 1.40654 1.40954 1.47969 1.49326 2.41546 2.88206 3.17145 3.73758 3.85332 3.92555 4.10931 4.27376 4.39352 4.48278 4.59791 4.60813 4.73049 4.77733 4.92096 4.96241 5.02262 5.13438 5.18058 5.25707 5.34575 5.45028 5.54126 5.63721 5.70123 6.01448 6.09404 6.20177 6.36661 6.83923 7.43661 8.93431 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.007228 C = 0.006552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.801723 B = 3873.046418 C = 4272.204839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.066 3.934 3 H 0.027 0.973 4 C -0.519 4.519 5 H 0.044 0.956 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.273 1.273 12 C -0.050 4.050 13 C -0.131 4.131 14 C -0.107 4.107 15 C -0.126 4.126 16 C -0.089 4.089 17 C -0.103 4.103 18 C -0.088 4.088 19 C -0.114 4.114 20 C -0.093 4.093 21 S -0.144 6.144 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.021 0.979 25 H 0.262 0.738 26 H 0.114 0.886 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 0.021 -11.894 13.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.048 3.952 3 H 0.045 0.955 4 C -0.557 4.557 5 H 0.063 0.937 6 C -0.180 4.180 7 N -0.553 5.553 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.198 1.198 12 C -0.052 4.052 13 C -0.151 4.151 14 C -0.126 4.126 15 C -0.149 4.149 16 C -0.201 4.201 17 C -0.108 4.108 18 C -0.125 4.125 19 C -0.153 4.153 20 C -0.240 4.240 21 S 0.097 5.903 22 H 0.049 0.951 23 H 0.079 0.921 24 H 0.040 0.960 25 H 0.071 0.929 26 H 0.132 0.868 27 H 0.168 0.832 28 H 0.159 0.841 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.156 0.844 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.049 -0.275 -12.685 14.056 hybrid contribution -0.823 0.096 2.263 2.410 sum 5.226 -0.178 -10.421 11.659 Atomic orbital electron populations 1.21658 0.97758 0.99144 0.99537 1.17918 0.92844 0.95185 0.89273 0.95526 1.21278 1.31068 1.12175 0.91188 0.93725 1.25621 0.95264 0.95679 1.01429 1.69984 1.37402 1.23895 1.24056 0.85758 0.78711 0.78904 0.79188 1.20014 1.20692 1.19815 1.20590 0.94459 0.94960 0.95171 1.21043 1.01265 0.94765 0.97981 1.21250 0.97023 1.00421 0.93921 1.21006 0.99286 0.93595 1.01020 1.21412 1.02207 0.98580 0.97945 1.19664 0.99355 0.97276 0.94522 1.20291 0.98242 0.92088 1.01870 1.21584 0.96566 1.03632 0.93484 1.23846 1.07739 0.93484 0.98976 1.85028 1.52231 1.08346 1.44727 0.95090 0.92056 0.96027 0.92871 0.86770 0.83153 0.84121 0.90973 0.91125 0.91401 0.87787 0.84397 0.88691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 8.71 71.98 0.63 -5.39 16 2 C 0.07 3.31 2.07 -12.29 -0.03 3.28 16 3 H 0.03 1.42 5.34 -2.39 -0.01 1.40 16 4 C -0.52 -28.45 8.31 25.60 0.21 -28.23 16 5 H 0.04 2.48 7.72 -2.91 -0.02 2.46 16 6 C 0.02 1.04 5.30 84.65 0.45 1.49 16 7 N -0.91 -51.72 11.32 21.45 0.24 -51.48 16 8 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 C -0.05 -2.20 4.75 -19.72 -0.09 -2.29 16 13 C -0.13 -5.23 8.85 22.18 0.20 -5.04 16 14 C -0.11 -3.51 10.06 22.18 0.22 -3.28 16 15 C -0.13 -4.06 9.65 22.49 0.22 -3.84 16 16 C -0.09 -3.11 6.05 22.59 0.14 -2.97 16 17 C -0.10 -4.02 5.77 -19.82 -0.11 -4.14 16 18 C -0.09 -3.10 4.37 29.27 0.13 -2.97 16 19 C -0.11 -3.01 5.84 30.40 0.18 -2.83 16 20 C -0.09 -2.07 6.53 72.16 0.47 -1.60 16 21 S -0.14 -4.00 21.99 -56.49 -1.24 -5.24 16 22 H 0.03 1.44 7.03 -2.39 -0.02 1.42 16 23 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.26 14.16 8.31 -92.71 -0.77 13.39 16 26 H 0.11 4.66 7.18 -2.91 -0.02 4.63 16 27 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 28 H 0.14 3.73 8.05 -2.91 -0.02 3.71 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.93 6.12 -2.38 -0.01 2.92 16 31 H 0.07 1.92 8.03 -2.38 -0.02 1.90 16 32 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.14 2.20 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.05 8.08 -2.39 -0.02 2.03 16 Total: -1.00 -60.19 282.98 4.72 -55.48 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 1.09 Total: 13.55 kcal Atomic # 6 Polarization: -60.42 SS G_CDS: 2.60 Total: -57.81 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.24 Total: -51.48 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -4.00 SS G_CDS: -1.24 Total: -5.24 kcal Total: -60.19 4.72 -55.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045556.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.531 kcal (2) G-P(sol) polarization free energy of solvation -60.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds