Wall clock time and date at job start Mon Mar 30 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99709 * 2 1 4 4 H 1.48495 * 109.46711 * 264.67652 * 3 2 1 5 5 H 1.48500 * 109.46950 * 24.67620 * 3 2 1 6 6 H 1.48500 * 109.47005 * 144.67645 * 3 2 1 7 7 C 1.37868 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00422 * 4.77548 * 7 2 1 9 9 C 1.50706 * 120.00471 * 184.77644 * 7 2 1 10 10 H 1.09005 * 109.46581 * 354.94198 * 9 7 2 11 11 C 1.52999 * 109.47331 * 234.94826 * 9 7 2 12 12 N 1.46901 * 109.47231 * 65.30949 * 11 9 7 13 13 C 1.50700 * 109.47192 * 114.94432 * 9 7 2 14 14 C 1.34242 * 126.49660 * 59.98066 * 13 9 7 15 15 N 1.36791 * 109.93263 * 179.97438 * 14 13 9 16 16 H 0.97002 * 125.07143 * 180.02562 * 15 14 13 17 17 C 1.37783 * 109.85711 * 359.97438 * 15 14 13 18 18 C 1.40624 * 107.15595 * 0.02562 * 17 15 14 19 19 C 1.39657 * 119.94258 * 180.02562 * 18 17 15 20 20 C 1.36637 * 119.81000 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.54551 * 359.71976 * 20 19 18 22 22 C 1.37980 * 120.63091 * 0.56365 * 21 20 19 23 23 F 1.35098 * 120.12785 * 179.72036 * 22 21 20 24 24 H 0.97001 * 120.00450 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47009 * 185.31418 * 11 9 7 26 26 H 1.09004 * 109.47162 * 305.31234 * 11 9 7 27 27 H 1.00892 * 110.99985 * 61.09726 * 12 11 9 28 28 H 1.00900 * 111.00024 * 185.05344 * 12 11 9 29 29 H 1.08005 * 125.03248 * 359.97438 * 14 13 9 30 30 H 1.08002 * 120.09858 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.72983 * 180.02562 * 20 19 18 32 32 H 1.08000 * 119.68365 * 180.28515 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6090 1.9815 -1.3940 5 1 1.3947 2.6826 0.5845 6 1 3.4859 1.4754 0.8095 7 6 2.0045 -1.1939 0.0005 8 1 1.4674 -2.1277 -0.0769 9 6 3.5077 -1.1962 0.1092 10 1 3.8750 -0.1702 0.0873 11 6 4.1027 -1.9761 -1.0649 12 7 3.8113 -1.2700 -2.3197 13 6 3.9167 -1.8487 1.4046 14 6 3.6437 -3.1065 1.7861 15 7 4.1770 -3.3448 3.0230 16 1 4.1106 -4.1832 3.5065 17 6 4.8235 -2.2168 3.4791 18 6 4.6883 -1.2309 2.4856 19 6 5.2520 0.0326 2.6761 20 6 5.9337 0.3055 3.8284 21 6 6.0663 -0.6613 4.8154 22 6 5.5226 -1.9181 4.6460 23 9 5.6627 -2.8532 5.6109 24 1 -0.4851 0.8400 -0.0004 25 1 5.1819 -2.0586 -0.9365 26 1 3.6636 -2.9732 -1.0987 27 1 4.2233 -0.3490 -2.3204 28 1 4.1217 -1.8056 -3.1165 29 1 3.0856 -3.8241 1.2027 30 1 5.1493 0.7918 1.9149 31 1 6.3686 1.2832 3.9745 32 1 6.6041 -0.4291 5.7227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:08 Heat of formation + Delta-G solvation = 10.421675 kcal Electronic energy + Delta-G solvation = -17732.066751 eV Core-core repulsion = 14800.233922 eV Total energy + Delta-G solvation = -2931.832829 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.62371 -40.73141 -36.57820 -35.32695 -32.18064 -31.42076 -29.36203 -29.01425 -27.01871 -24.02081 -22.45967 -21.80953 -21.14841 -18.65871 -17.66194 -17.06108 -16.48825 -15.68392 -15.48580 -14.90744 -14.74200 -14.45943 -14.19286 -13.59808 -13.41009 -13.06822 -12.81497 -12.34211 -11.99339 -11.70193 -11.34069 -11.23523 -11.09551 -10.91654 -10.57476 -10.12925 -9.61744 -9.07094 -8.84505 -8.41457 -7.91578 -7.74470 -7.00896 -5.94849 -3.90014 1.33680 1.83839 3.27503 3.38208 3.40925 3.44851 3.48828 4.15174 4.53019 4.53470 5.02419 5.20335 5.29034 5.39438 5.52986 5.61136 5.77123 6.00085 6.07122 6.21028 6.22640 6.37898 6.55760 6.59852 6.80942 6.86529 7.05842 7.21352 7.39169 7.56824 7.79227 7.95481 8.05110 8.20961 8.60960 9.07165 9.69045 11.19118 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.008034 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.639517 B = 3484.504221 C = 3820.263566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.075 3.925 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.265 1.265 7 C -0.473 4.473 8 H 0.071 0.929 9 C 0.071 3.929 10 H 0.046 0.954 11 C 0.082 3.918 12 N -0.831 5.831 13 C -0.110 4.110 14 C 0.040 3.960 15 N -0.593 5.593 16 H 0.411 0.589 17 C 0.062 3.938 18 C -0.080 4.080 19 C -0.070 4.070 20 C -0.139 4.139 21 C -0.140 4.140 22 C 0.074 3.926 23 F -0.152 7.152 24 H 0.261 0.739 25 H -0.004 1.004 26 H 0.060 0.940 27 H 0.329 0.671 28 H 0.324 0.676 29 H 0.169 0.831 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.331 -2.902 5.016 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.126 4.126 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.190 1.190 7 C -0.510 4.510 8 H 0.089 0.911 9 C 0.051 3.949 10 H 0.064 0.936 11 C -0.049 4.049 12 N -0.358 5.358 13 C -0.117 4.117 14 C -0.084 4.084 15 N -0.196 5.196 16 H 0.247 0.753 17 C -0.047 4.047 18 C -0.086 4.086 19 C -0.089 4.089 20 C -0.158 4.158 21 C -0.160 4.160 22 C 0.052 3.948 23 F -0.131 7.131 24 H 0.071 0.929 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.187 0.813 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.341 -3.030 5.281 12.872 hybrid contribution 1.235 0.339 0.394 1.340 sum 12.576 -2.691 5.676 14.057 Atomic orbital electron populations 1.69888 1.06298 1.26637 1.51529 1.24973 0.94562 0.98671 0.94382 0.86922 0.80082 0.84046 0.78492 1.20050 1.22213 1.19014 1.20630 0.87706 0.94391 1.48316 0.91118 1.17829 0.97248 0.94536 0.85283 0.93596 1.21879 0.94181 0.97981 0.90820 1.58421 1.67971 1.05831 1.03580 1.21136 0.99567 0.92735 0.98216 1.21569 1.01992 0.98909 0.85912 1.41645 1.48406 1.12078 1.17468 0.75278 1.18144 1.01407 0.89601 0.95569 1.19216 1.01457 0.93225 0.94733 1.20499 0.95666 0.95192 0.97509 1.20337 1.02511 0.99077 0.93907 1.20648 1.03025 0.91423 1.00917 1.16645 1.04943 0.87948 0.85276 1.91417 1.94750 1.64698 1.62214 0.92941 0.98582 0.92185 0.85990 0.86486 0.81346 0.85615 0.85671 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.39 27.24 -169.99 -4.63 16.76 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.30 -7.38 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.01 5.30 56.52 0.30 -5.71 16 7 C -0.47 -12.71 8.43 -34.44 -0.29 -13.00 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.65 16 9 C 0.07 1.58 2.32 -92.92 -0.22 1.37 16 10 H 0.05 1.05 4.51 -51.93 -0.23 0.82 16 11 C 0.08 1.59 5.99 -3.82 -0.02 1.56 16 12 N -0.83 -15.43 9.32 -10.37 -0.10 -15.53 16 13 C -0.11 -2.27 5.04 -102.71 -0.52 -2.79 16 14 C 0.04 0.72 11.35 -16.75 -0.19 0.53 16 15 N -0.59 -9.66 6.07 -10.61 -0.06 -9.72 16 16 H 0.41 5.29 8.96 -40.82 -0.37 4.93 16 17 C 0.06 1.12 7.26 -83.91 -0.61 0.51 16 18 C -0.08 -1.58 6.35 -105.15 -0.67 -2.25 16 19 C -0.07 -1.26 10.05 -39.63 -0.40 -1.65 16 20 C -0.14 -2.08 9.97 -39.95 -0.40 -2.47 16 21 C -0.14 -2.06 9.99 -39.47 -0.39 -2.45 16 22 C 0.07 1.22 7.32 -39.29 -0.29 0.93 16 23 F -0.15 -2.39 17.27 2.25 0.04 -2.35 16 24 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.33 5.81 9.05 -39.30 -0.36 5.46 16 28 H 0.32 4.93 9.08 -39.29 -0.36 4.58 16 29 H 0.17 2.74 8.06 -52.48 -0.42 2.31 16 30 H 0.13 2.23 6.97 -52.49 -0.37 1.87 16 31 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 32 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 278.32 15.07 4.19 4.19 Total: -1.00 -31.50 278.32 -7.33 -38.83 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.45 Total: 12.42 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -4.09 Total: -17.70 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: 0.61 Total: -52.16 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.63 Total: 16.76 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.50 -7.33 -38.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.249 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds