Wall clock time and date at job start Mon Mar 30 2020 06:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99709 * 2 1 4 4 H 1.48495 * 109.46711 * 264.67652 * 3 2 1 5 5 H 1.48500 * 109.46950 * 24.67620 * 3 2 1 6 6 H 1.48500 * 109.47005 * 144.67645 * 3 2 1 7 7 C 1.37868 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00422 * 4.77548 * 7 2 1 9 9 C 1.50706 * 120.00471 * 184.77644 * 7 2 1 10 10 H 1.09005 * 109.46581 * 354.94198 * 9 7 2 11 11 C 1.52999 * 109.47331 * 234.94826 * 9 7 2 12 12 N 1.46901 * 109.47231 * 65.30949 * 11 9 7 13 13 C 1.50700 * 109.47192 * 114.94432 * 9 7 2 14 14 C 1.34242 * 126.49660 * 59.98066 * 13 9 7 15 15 N 1.36791 * 109.93263 * 179.97438 * 14 13 9 16 16 H 0.97002 * 125.07143 * 180.02562 * 15 14 13 17 17 C 1.37783 * 109.85711 * 359.97438 * 15 14 13 18 18 C 1.40624 * 107.15595 * 0.02562 * 17 15 14 19 19 C 1.39657 * 119.94258 * 180.02562 * 18 17 15 20 20 C 1.36637 * 119.81000 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.54551 * 359.71976 * 20 19 18 22 22 C 1.37980 * 120.63091 * 0.56365 * 21 20 19 23 23 F 1.35098 * 120.12785 * 179.72036 * 22 21 20 24 24 H 0.97001 * 120.00450 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.47009 * 185.31418 * 11 9 7 26 26 H 1.09004 * 109.47162 * 305.31234 * 11 9 7 27 27 H 1.00892 * 110.99985 * 61.09726 * 12 11 9 28 28 H 1.00900 * 111.00024 * 185.05344 * 12 11 9 29 29 H 1.08005 * 125.03248 * 359.97438 * 14 13 9 30 30 H 1.08002 * 120.09858 * 180.02562 * 19 18 17 31 31 H 1.08000 * 119.72983 * 180.02562 * 20 19 18 32 32 H 1.08000 * 119.68365 * 180.28515 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6090 1.9815 -1.3940 5 1 1.3947 2.6826 0.5845 6 1 3.4859 1.4754 0.8095 7 6 2.0045 -1.1939 0.0005 8 1 1.4674 -2.1277 -0.0769 9 6 3.5077 -1.1962 0.1092 10 1 3.8750 -0.1702 0.0873 11 6 4.1027 -1.9761 -1.0649 12 7 3.8113 -1.2700 -2.3197 13 6 3.9167 -1.8487 1.4046 14 6 3.6437 -3.1065 1.7861 15 7 4.1770 -3.3448 3.0230 16 1 4.1106 -4.1832 3.5065 17 6 4.8235 -2.2168 3.4791 18 6 4.6883 -1.2309 2.4856 19 6 5.2520 0.0326 2.6761 20 6 5.9337 0.3055 3.8284 21 6 6.0663 -0.6613 4.8154 22 6 5.5226 -1.9181 4.6460 23 9 5.6627 -2.8532 5.6109 24 1 -0.4851 0.8400 -0.0004 25 1 5.1819 -2.0586 -0.9365 26 1 3.6636 -2.9732 -1.0987 27 1 4.2233 -0.3490 -2.3204 28 1 4.1217 -1.8056 -3.1165 29 1 3.0856 -3.8241 1.2027 30 1 5.1493 0.7918 1.9149 31 1 6.3686 1.2832 3.9745 32 1 6.6041 -0.4291 5.7227 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053012.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:08 Heat of formation + Delta-G solvation = -11.536196 kcal Electronic energy + Delta-G solvation = -17733.018915 eV Core-core repulsion = 14800.233922 eV Total energy + Delta-G solvation = -2932.784994 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.85494 -42.08234 -37.87567 -36.94349 -34.14386 -32.93486 -30.81196 -30.30436 -28.60670 -25.87470 -23.75036 -23.15239 -22.68460 -20.14472 -19.09590 -19.00283 -17.83315 -16.92613 -16.74499 -16.52324 -16.14465 -15.97419 -15.60488 -15.13853 -14.89605 -14.76459 -14.36541 -13.98902 -13.35882 -13.26430 -12.84395 -12.65135 -12.50459 -12.46875 -12.23356 -11.89258 -11.62333 -10.90305 -10.54695 -10.26204 -9.22897 -9.20313 -8.40280 -8.11130 -6.08571 0.04368 0.57756 1.41497 1.45527 1.51634 1.84765 2.20407 2.49630 2.83017 3.24431 3.34424 3.78919 3.95114 4.06302 4.08008 4.40193 4.43314 4.53186 4.69600 4.73242 4.92209 4.99409 5.17003 5.22480 5.29385 5.47604 5.59479 5.76228 5.87149 5.93826 6.18414 6.46624 6.56775 6.70378 6.88392 6.94854 7.53933 9.06333 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.008034 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.639517 B = 3484.504221 C = 3820.263566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C 0.010 3.990 3 Si 0.933 3.067 4 H -0.263 1.263 5 H -0.305 1.305 6 H -0.239 1.239 7 C -0.458 4.458 8 H 0.031 0.969 9 C 0.076 3.924 10 H 0.041 0.959 11 C 0.090 3.910 12 N -0.849 5.849 13 C -0.151 4.151 14 C 0.050 3.950 15 N -0.583 5.583 16 H 0.427 0.573 17 C 0.047 3.953 18 C -0.107 4.107 19 C -0.095 4.095 20 C -0.123 4.123 21 C -0.129 4.129 22 C 0.065 3.935 23 F -0.148 7.148 24 H 0.257 0.743 25 H 0.018 0.982 26 H 0.056 0.944 27 H 0.335 0.665 28 H 0.344 0.656 29 H 0.180 0.820 30 H 0.122 0.878 31 H 0.163 0.837 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.081 -2.328 6.268 16.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.185 4.185 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.233 1.233 6 H -0.163 1.163 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.056 3.944 10 H 0.059 0.941 11 C -0.041 4.041 12 N -0.379 5.379 13 C -0.158 4.158 14 C -0.075 4.075 15 N -0.187 5.187 16 H 0.266 0.734 17 C -0.062 4.062 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.142 4.142 21 C -0.149 4.149 22 C 0.044 3.956 23 F -0.127 7.127 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.147 0.853 28 H 0.157 0.843 29 H 0.198 0.802 30 H 0.140 0.860 31 H 0.180 0.820 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.143 -2.491 6.542 15.780 hybrid contribution 0.437 0.043 0.076 0.445 sum 14.579 -2.447 6.618 16.197 Atomic orbital electron populations 1.70062 1.08270 1.27185 1.54827 1.25797 0.95199 1.02567 0.94911 0.85984 0.79496 0.79224 0.79374 1.18816 1.23307 1.16291 1.20868 0.90338 0.92495 1.45937 0.95075 1.17690 0.93964 0.95141 0.87588 0.94088 1.21688 0.95181 0.97267 0.89937 1.58369 1.68722 1.06616 1.04162 1.20968 1.02420 0.94157 0.98283 1.21713 1.00839 0.98490 0.86458 1.41584 1.47677 1.12595 1.16848 0.73446 1.18362 1.02072 0.89680 0.96059 1.19404 1.02419 0.94548 0.94879 1.20674 0.97117 0.94652 0.98935 1.20751 1.00510 1.00583 0.92360 1.21112 1.01644 0.90238 1.01898 1.16854 1.05073 0.88796 0.84924 1.91428 1.94712 1.64722 1.61859 0.93407 0.96363 0.92506 0.85321 0.84336 0.80248 0.86001 0.81991 0.81648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.11 13.96 21.44 0.30 -60.82 16 2 C 0.01 0.58 5.47 84.65 0.46 1.05 16 3 Si 0.93 44.41 27.24 68.60 1.87 46.28 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.24 -10.25 5.30 99.48 0.53 -9.72 16 7 C -0.46 -25.24 8.43 25.60 0.22 -25.02 16 8 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 9 C 0.08 3.37 2.32 -12.28 -0.03 3.34 16 10 H 0.04 1.84 4.51 -2.38 -0.01 1.82 16 11 C 0.09 3.39 5.99 86.30 0.52 3.91 16 12 N -0.85 -30.54 9.32 -186.72 -1.74 -32.28 16 13 C -0.15 -6.19 5.04 -18.63 -0.09 -6.28 16 14 C 0.05 1.80 11.35 83.01 0.94 2.74 16 15 N -0.58 -18.25 6.07 -187.49 -1.14 -19.39 16 16 H 0.43 10.33 8.96 -92.71 -0.83 9.50 16 17 C 0.05 1.62 7.26 39.04 0.28 1.90 16 18 C -0.11 -4.07 6.35 -20.20 -0.13 -4.20 16 19 C -0.10 -3.19 10.05 22.24 0.22 -2.97 16 20 C -0.12 -3.18 9.97 22.03 0.22 -2.96 16 21 C -0.13 -3.25 9.99 22.34 0.22 -3.03 16 22 C 0.07 1.97 7.32 22.46 0.16 2.13 16 23 F -0.15 -4.24 17.27 44.97 0.78 -3.46 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.33 11.31 9.05 -89.70 -0.81 10.50 16 28 H 0.34 9.93 9.08 -89.69 -0.81 9.12 16 29 H 0.18 5.82 8.06 -2.91 -0.02 5.80 16 30 H 0.12 4.07 6.97 -2.91 -0.02 4.05 16 31 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -69.73 278.32 1.62 -68.11 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -1.45 Total: 30.95 kcal Atomic # 6 Polarization: -32.39 SS G_CDS: 3.00 Total: -29.39 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -2.58 Total: -112.49 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.78 Total: -3.46 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.87 Total: 46.28 kcal Total: -69.73 1.62 -68.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053012.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.576 kcal (2) G-P(sol) polarization free energy of solvation -69.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds