Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 C 1.52997 * 109.47430 * 59.99633 * 9 7 2 12 12 N 1.46898 * 109.46971 * 185.00033 * 11 9 7 13 13 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 14 14 C 1.34253 * 126.49001 * 299.68117 * 13 9 7 15 15 N 1.36798 * 109.93114 * 179.83286 * 14 13 9 16 16 H 0.96994 * 125.07455 * 180.14232 * 15 14 13 17 17 C 1.37779 * 109.85412 * 0.45048 * 15 14 13 18 18 C 1.40628 * 107.16206 * 359.73361 * 17 15 14 19 19 C 1.39654 * 119.94721 * 180.02562 * 18 17 15 20 20 C 1.36641 * 119.80676 * 359.97438 * 19 18 17 21 21 C 1.38790 * 120.54537 * 359.97438 * 20 19 18 22 22 C 1.37976 * 120.63935 * 0.03913 * 21 20 19 23 23 F 1.35096 * 120.13369 * 180.02562 * 22 21 20 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47065 * 304.99882 * 11 9 7 26 26 H 1.09001 * 109.47096 * 65.00041 * 11 9 7 27 27 H 1.00903 * 111.00197 * 56.04277 * 12 11 9 28 28 H 1.00896 * 111.00046 * 180.02562 * 12 11 9 29 29 H 1.08001 * 125.03111 * 0.02562 * 14 13 9 30 30 H 1.08000 * 120.09996 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.72352 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.67839 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 6 4.0211 -0.4737 1.2499 12 7 5.4851 -0.3683 1.1916 13 6 4.0137 -2.6150 -0.0013 14 6 3.7755 -3.5469 0.9352 15 7 4.3916 -4.7195 0.5936 16 1 4.3616 -5.5373 1.1144 17 6 5.0669 -4.5637 -0.5972 18 6 4.8596 -3.2391 -1.0215 19 6 5.4322 -2.7913 -2.2140 20 6 6.1929 -3.6433 -2.9641 21 6 6.4024 -4.9515 -2.5507 22 6 5.8462 -5.4154 -1.3763 23 9 6.0572 -6.6906 -0.9833 24 1 -0.4850 0.8401 0.0004 25 1 3.5865 0.5248 1.2962 26 1 3.7324 -1.0372 2.1372 27 1 5.7810 0.0938 0.3448 28 1 5.8464 0.1038 2.0068 29 1 3.1825 -3.3943 1.8249 30 1 5.2749 -1.7744 -2.5420 31 1 6.6347 -3.2957 -3.8863 32 1 7.0064 -5.6128 -3.1542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261053017.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = 13.262936 kcal Electronic energy + Delta-G solvation = -17718.110136 eV Core-core repulsion = 14786.400514 eV Total energy + Delta-G solvation = -2931.709623 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.57651 -40.67527 -36.55803 -35.52917 -32.35880 -31.33549 -29.39524 -28.95702 -27.24956 -23.55165 -22.39891 -21.90458 -21.62659 -18.64787 -17.58426 -16.98507 -16.39602 -15.61195 -15.44172 -15.12511 -14.78276 -14.62162 -14.34830 -13.55692 -13.33820 -13.06598 -12.81973 -12.71084 -12.00759 -11.53539 -11.33652 -11.19235 -11.12217 -10.97215 -10.33860 -10.12843 -9.81598 -9.34369 -8.82070 -8.66122 -7.93610 -7.83995 -6.94434 -6.13847 -4.13625 1.40167 1.90565 3.17530 3.27303 3.31899 3.37723 3.54028 4.23138 4.31705 4.58891 5.07554 5.13012 5.25459 5.36684 5.45576 5.65417 5.77491 6.04768 6.06403 6.25666 6.31212 6.42314 6.59211 6.60581 6.74362 6.91460 7.16740 7.25285 7.44862 7.57534 7.69218 7.82256 8.01201 8.02585 8.48744 8.92825 9.46766 10.98824 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.006851 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.025234 B = 4086.192559 C = 4204.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.507 4.507 8 H 0.078 0.922 9 C 0.082 3.918 10 H 0.033 0.967 11 C 0.061 3.939 12 N -0.848 5.848 13 C -0.083 4.083 14 C 0.041 3.959 15 N -0.594 5.594 16 H 0.411 0.589 17 C 0.061 3.939 18 C -0.072 4.072 19 C -0.066 4.066 20 C -0.139 4.139 21 C -0.142 4.142 22 C 0.073 3.927 23 F -0.153 7.153 24 H 0.264 0.736 25 H 0.015 0.985 26 H 0.067 0.933 27 H 0.332 0.668 28 H 0.324 0.676 29 H 0.168 0.832 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.568 -5.483 -0.852 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.224 1.224 7 C -0.545 4.545 8 H 0.096 0.904 9 C 0.062 3.938 10 H 0.051 0.949 11 C -0.069 4.069 12 N -0.376 5.376 13 C -0.089 4.089 14 C -0.083 4.083 15 N -0.196 5.196 16 H 0.246 0.754 17 C -0.048 4.048 18 C -0.078 4.078 19 C -0.084 4.084 20 C -0.158 4.158 21 C -0.162 4.162 22 C 0.051 3.949 23 F -0.132 7.132 24 H 0.074 0.926 25 H 0.033 0.967 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.135 0.865 29 H 0.186 0.814 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 11.333 -6.307 -0.718 12.990 hybrid contribution 0.137 1.335 0.432 1.410 sum 11.470 -4.972 -0.286 12.505 Atomic orbital electron populations 1.69885 1.06206 1.26958 1.50423 1.25037 0.94726 0.98864 0.94576 0.86834 0.79879 0.83842 0.77506 1.20928 1.19353 1.22405 1.21027 0.87985 0.94639 1.50897 0.90412 1.17701 0.95670 0.87231 0.93173 0.94882 1.22413 0.85348 0.97940 1.01180 1.58891 1.12133 1.60275 1.06294 1.20315 0.98964 0.96785 0.92809 1.21559 1.00918 0.84200 1.01607 1.41598 1.45409 1.13103 1.19509 0.75356 1.18142 1.00487 0.95994 0.90144 1.19141 1.00604 0.91685 0.96374 1.20366 0.95526 0.99775 0.92752 1.20315 1.01912 0.92882 1.00740 1.20623 1.02875 0.97388 0.95336 1.16651 1.03563 0.78349 0.96289 1.91412 1.93976 1.36738 1.91064 0.92569 0.96741 0.91428 0.85695 0.86499 0.81446 0.85720 0.85761 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 21.01 24.41 -169.99 -4.15 16.86 16 4 H -0.28 -6.52 6.83 56.52 0.39 -6.13 16 5 H -0.27 -6.00 6.53 56.52 0.37 -5.63 16 6 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.51 -13.54 8.99 -34.44 -0.31 -13.85 16 8 H 0.08 2.28 7.96 -52.49 -0.42 1.86 16 9 C 0.08 1.85 1.90 -92.92 -0.18 1.67 16 10 H 0.03 0.77 7.20 -51.93 -0.37 0.40 16 11 C 0.06 1.25 5.61 -3.83 -0.02 1.23 16 12 N -0.85 -14.63 9.34 -10.37 -0.10 -14.73 16 13 C -0.08 -1.71 4.72 -102.71 -0.49 -2.19 16 14 C 0.04 0.75 11.14 -16.74 -0.19 0.57 16 15 N -0.59 -9.78 6.07 -10.61 -0.06 -9.85 16 16 H 0.41 5.41 8.96 -40.82 -0.37 5.05 16 17 C 0.06 1.10 7.26 -83.90 -0.61 0.49 16 18 C -0.07 -1.39 6.35 -105.15 -0.67 -2.06 16 19 C -0.07 -1.11 10.05 -39.63 -0.40 -1.51 16 20 C -0.14 -1.99 9.97 -39.95 -0.40 -2.39 16 21 C -0.14 -2.06 9.99 -39.47 -0.39 -2.45 16 22 C 0.07 1.20 7.32 -39.29 -0.29 0.92 16 23 F -0.15 -2.42 17.27 2.25 0.04 -2.38 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.01 0.32 3.22 -51.93 -0.17 0.16 16 26 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 27 H 0.33 5.50 8.99 -39.29 -0.35 5.15 16 28 H 0.32 4.78 9.08 -39.29 -0.36 4.43 16 29 H 0.17 2.85 8.06 -52.49 -0.42 2.43 16 30 H 0.12 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 274.10 15.07 4.13 4.13 Total: -1.00 -30.18 274.10 -6.72 -36.90 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.32 Total: 12.56 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.03 Total: -17.76 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.61 Total: -50.31 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.15 Total: 16.86 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.18 -6.72 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053017.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.160 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds