Wall clock time and date at job start Mon Mar 30 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 C 1.52997 * 109.47430 * 59.99633 * 9 7 2 12 12 N 1.46898 * 109.46971 * 185.00033 * 11 9 7 13 13 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 14 14 C 1.34253 * 126.49001 * 299.68117 * 13 9 7 15 15 N 1.36798 * 109.93114 * 179.83286 * 14 13 9 16 16 H 0.96994 * 125.07455 * 180.14232 * 15 14 13 17 17 C 1.37779 * 109.85412 * 0.45048 * 15 14 13 18 18 C 1.40628 * 107.16206 * 359.73361 * 17 15 14 19 19 C 1.39654 * 119.94721 * 180.02562 * 18 17 15 20 20 C 1.36641 * 119.80676 * 359.97438 * 19 18 17 21 21 C 1.38790 * 120.54537 * 359.97438 * 20 19 18 22 22 C 1.37976 * 120.63935 * 0.03913 * 21 20 19 23 23 F 1.35096 * 120.13369 * 180.02562 * 22 21 20 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47065 * 304.99882 * 11 9 7 26 26 H 1.09001 * 109.47096 * 65.00041 * 11 9 7 27 27 H 1.00903 * 111.00197 * 56.04277 * 12 11 9 28 28 H 1.00896 * 111.00046 * 180.02562 * 12 11 9 29 29 H 1.08001 * 125.03111 * 0.02562 * 14 13 9 30 30 H 1.08000 * 120.09996 * 180.02562 * 19 18 17 31 31 H 1.08004 * 119.72352 * 179.97438 * 20 19 18 32 32 H 1.08001 * 119.67839 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 6 4.0211 -0.4737 1.2499 12 7 5.4851 -0.3683 1.1916 13 6 4.0137 -2.6150 -0.0013 14 6 3.7755 -3.5469 0.9352 15 7 4.3916 -4.7195 0.5936 16 1 4.3616 -5.5373 1.1144 17 6 5.0669 -4.5637 -0.5972 18 6 4.8596 -3.2391 -1.0215 19 6 5.4322 -2.7913 -2.2140 20 6 6.1929 -3.6433 -2.9641 21 6 6.4024 -4.9515 -2.5507 22 6 5.8462 -5.4154 -1.3763 23 9 6.0572 -6.6906 -0.9833 24 1 -0.4850 0.8401 0.0004 25 1 3.5865 0.5248 1.2962 26 1 3.7324 -1.0372 2.1372 27 1 5.7810 0.0938 0.3448 28 1 5.8464 0.1038 2.0068 29 1 3.1825 -3.3943 1.8249 30 1 5.2749 -1.7744 -2.5420 31 1 6.6347 -3.2957 -3.8863 32 1 7.0064 -5.6128 -3.1542 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261053017.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:10 Heat of formation + Delta-G solvation = -8.066452 kcal Electronic energy + Delta-G solvation = -17719.035048 eV Core-core repulsion = 14786.400514 eV Total energy + Delta-G solvation = -2932.634534 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.80699 -42.02279 -37.88035 -37.11772 -34.32305 -32.79432 -30.87568 -30.23566 -28.79611 -25.42749 -23.67930 -23.49350 -22.93135 -20.09996 -19.03692 -18.84635 -17.77047 -16.95985 -16.80102 -16.66016 -16.19894 -16.09914 -15.54025 -15.04779 -15.02200 -14.74186 -14.55212 -14.04039 -13.37152 -13.22593 -12.84376 -12.60856 -12.54164 -12.37694 -11.99756 -11.84232 -11.57475 -11.33736 -10.76130 -10.19458 -9.39755 -9.14574 -8.34301 -8.24877 -6.30446 0.12272 0.66018 1.29523 1.36055 1.45917 1.93235 2.25272 2.32684 2.92759 3.07834 3.34224 3.85964 3.91653 4.06719 4.13245 4.34557 4.49068 4.51586 4.68006 4.76837 4.90194 5.00378 5.12617 5.23166 5.35401 5.59333 5.62796 5.70734 5.87458 6.03037 6.23730 6.31607 6.44099 6.69345 6.74192 6.82904 7.33870 8.89744 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.006851 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.025234 B = 4086.192559 C = 4204.745362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.013 3.987 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.246 1.246 6 H -0.302 1.302 7 C -0.505 4.505 8 H 0.035 0.965 9 C 0.090 3.910 10 H 0.026 0.974 11 C 0.071 3.929 12 N -0.842 5.842 13 C -0.119 4.119 14 C 0.043 3.957 15 N -0.584 5.584 16 H 0.425 0.575 17 C 0.046 3.954 18 C -0.099 4.099 19 C -0.086 4.086 20 C -0.123 4.123 21 C -0.131 4.131 22 C 0.061 3.939 23 F -0.151 7.151 24 H 0.265 0.735 25 H 0.005 0.995 26 H 0.065 0.935 27 H 0.339 0.661 28 H 0.343 0.657 29 H 0.174 0.826 30 H 0.128 0.872 31 H 0.163 0.837 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.367 -5.545 -1.627 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.170 1.170 6 H -0.230 1.230 7 C -0.544 4.544 8 H 0.053 0.947 9 C 0.070 3.930 10 H 0.044 0.956 11 C -0.060 4.060 12 N -0.371 5.371 13 C -0.125 4.125 14 C -0.082 4.082 15 N -0.188 5.188 16 H 0.263 0.737 17 C -0.063 4.063 18 C -0.104 4.104 19 C -0.104 4.104 20 C -0.142 4.142 21 C -0.150 4.150 22 C 0.039 3.961 23 F -0.130 7.130 24 H 0.074 0.926 25 H 0.022 0.978 26 H 0.083 0.917 27 H 0.151 0.849 28 H 0.155 0.845 29 H 0.192 0.808 30 H 0.146 0.854 31 H 0.180 0.820 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.177 -6.402 -1.481 15.626 hybrid contribution -0.705 1.200 0.611 1.520 sum 13.472 -5.202 -0.870 14.468 Atomic orbital electron populations 1.70044 1.08181 1.27915 1.52692 1.25863 0.95390 1.02756 0.94386 0.85798 0.79219 0.78832 0.78215 1.19660 1.17007 1.23027 1.21251 0.90560 0.92916 1.49625 0.94684 1.17470 0.92577 0.89162 0.93794 0.95566 1.22107 0.87213 0.96827 0.99813 1.58732 1.09860 1.60971 1.07574 1.20231 1.01163 0.96399 0.94718 1.21639 1.00468 0.84681 1.01420 1.41522 1.44791 1.13083 1.19454 0.73683 1.18387 1.01158 0.96104 0.90649 1.19338 1.01474 0.92350 0.97273 1.20605 0.96472 1.00689 0.92663 1.20736 1.00038 0.92262 1.01213 1.21096 1.01664 0.97846 0.94436 1.16873 1.03880 0.78404 0.96896 1.91417 1.93951 1.36457 1.91154 0.92613 0.97785 0.91664 0.84910 0.84456 0.80849 0.85433 0.81957 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.04 13.96 21.45 0.30 -57.74 16 2 C 0.01 0.74 5.45 84.66 0.46 1.20 16 3 Si 0.95 43.42 24.41 68.60 1.67 45.09 16 4 H -0.27 -11.74 6.83 99.48 0.68 -11.06 16 5 H -0.25 -10.23 6.53 99.48 0.65 -9.58 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 7 C -0.50 -27.86 8.99 25.60 0.23 -27.63 16 8 H 0.03 2.17 7.96 -2.91 -0.02 2.15 16 9 C 0.09 4.05 1.90 -12.29 -0.02 4.03 16 10 H 0.03 1.21 7.20 -2.39 -0.02 1.19 16 11 C 0.07 2.82 5.61 86.30 0.48 3.30 16 12 N -0.84 -27.22 9.34 -186.73 -1.74 -28.96 16 13 C -0.12 -4.93 4.72 -18.62 -0.09 -5.02 16 14 C 0.04 1.60 11.14 83.01 0.92 2.52 16 15 N -0.58 -18.99 6.07 -187.47 -1.14 -20.13 16 16 H 0.42 10.89 8.96 -92.71 -0.83 10.06 16 17 C 0.05 1.60 7.26 39.04 0.28 1.88 16 18 C -0.10 -3.74 6.35 -20.20 -0.13 -3.87 16 19 C -0.09 -2.76 10.05 22.24 0.22 -2.53 16 20 C -0.12 -3.09 9.97 22.03 0.22 -2.87 16 21 C -0.13 -3.29 9.99 22.34 0.22 -3.06 16 22 C 0.06 1.87 7.32 22.46 0.16 2.03 16 23 F -0.15 -4.42 17.27 44.97 0.78 -3.64 16 24 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 25 H 0.00 0.19 3.22 -2.39 -0.01 0.18 16 26 H 0.06 2.60 7.87 -2.39 -0.02 2.58 16 27 H 0.34 10.36 8.99 -89.69 -0.81 9.56 16 28 H 0.34 9.16 9.08 -89.70 -0.81 8.35 16 29 H 0.17 6.04 8.06 -2.91 -0.02 6.01 16 30 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 31 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 32 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -66.66 274.10 1.50 -65.16 By element: Atomic # 1 Polarization: 31.58 SS G_CDS: -1.35 Total: 30.24 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 2.98 Total: -30.02 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -2.58 Total: -106.83 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.64 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.67 Total: 45.09 kcal Total: -66.66 1.50 -65.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261053017.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.098 kcal (2) G-P(sol) polarization free energy of solvation -66.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds