Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47064 * 94.93123 * 3 2 1 5 5 H 1.48505 * 109.47070 * 214.92785 * 3 2 1 6 6 H 1.48497 * 109.47729 * 334.93092 * 3 2 1 7 7 C 1.37878 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00498 * 7.63805 * 7 2 1 9 9 C 1.50702 * 119.99344 * 187.63813 * 7 2 1 10 10 H 1.09001 * 109.47374 * 359.61149 * 9 7 2 11 11 C 1.53002 * 109.47060 * 239.61139 * 9 7 2 12 12 N 1.46900 * 109.47011 * 65.44141 * 11 9 7 13 13 C 1.50697 * 109.46994 * 119.61577 * 9 7 2 14 14 C 1.34251 * 125.04322 * 84.69220 * 13 9 7 15 15 C 1.46482 * 107.01217 * 179.89422 * 14 13 9 16 16 C 1.39702 * 134.01429 * 180.10431 * 15 14 13 17 17 C 1.36598 * 119.80753 * 180.33026 * 16 15 14 18 18 C 1.38827 * 120.55207 * 359.95261 * 17 16 15 19 19 C 1.37946 * 120.63395 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.13407 * 179.97438 * 19 18 17 21 21 C 1.39316 * 119.73718 * 0.02562 * 19 18 17 22 22 N 1.36797 * 125.03513 * 264.99408 * 13 9 7 23 23 H 0.96997 * 125.07178 * 359.94559 * 22 13 9 24 24 H 0.96995 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47282 * 185.44609 * 11 9 7 26 26 H 1.09005 * 109.47347 * 305.44565 * 11 9 7 27 27 H 1.00895 * 110.99831 * 65.30710 * 12 11 9 28 28 H 1.00905 * 110.99582 * 189.25232 * 12 11 9 29 29 H 1.08003 * 126.49132 * 0.02562 * 14 13 9 30 30 H 1.08005 * 120.09240 * 0.32555 * 16 15 14 31 31 H 1.08004 * 119.72088 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.69213 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6008 1.9862 1.3949 5 1 3.4907 1.4725 -0.8016 6 1 1.3984 2.6805 -0.5932 7 6 2.0045 -1.1941 -0.0005 8 1 1.4718 -2.1252 -0.1253 9 6 3.5015 -1.1998 0.1729 10 1 3.8592 -0.1754 0.2766 11 6 4.1542 -1.8466 -1.0504 12 7 3.9125 -1.0105 -2.2338 13 6 3.8610 -1.9849 1.4080 14 6 4.0123 -3.3180 1.4571 15 6 4.3606 -3.6592 2.8384 16 6 4.6385 -4.8567 3.5020 17 6 4.9309 -4.8417 4.8362 18 6 4.9555 -3.6452 5.5398 19 6 4.6848 -2.4508 4.9050 20 9 4.7111 -1.2923 5.5997 21 6 4.3831 -2.4439 3.5449 22 7 4.0758 -1.4455 2.6466 23 1 4.0202 -0.5010 2.8605 24 1 -0.4850 0.8400 0.0004 25 1 5.2274 -1.9387 -0.8836 26 1 3.7252 -2.8358 -1.2108 27 1 4.3743 -0.1177 -2.1461 28 1 4.2000 -1.4850 -3.0766 29 1 3.9008 -4.0079 0.6337 30 1 4.6221 -5.7917 2.9616 31 1 5.1452 -5.7684 5.3479 32 1 5.1889 -3.6494 6.5943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = 5.803767 kcal Electronic energy + Delta-G solvation = -17546.802065 eV Core-core repulsion = 14614.768988 eV Total energy + Delta-G solvation = -2932.033076 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.59196 -40.76099 -36.91594 -35.04795 -32.32862 -31.18999 -30.20462 -28.77243 -27.22314 -24.22903 -22.45699 -21.59843 -20.95496 -19.06744 -17.72249 -17.28859 -16.56209 -15.63249 -15.45245 -15.09018 -14.82228 -14.44480 -13.92085 -13.61557 -13.44664 -12.94967 -12.82653 -12.52469 -12.41565 -11.71208 -11.45857 -11.24479 -11.13401 -10.97952 -10.82479 -10.19194 -9.81210 -9.38756 -9.10343 -8.62451 -7.88551 -7.74713 -7.16149 -6.14141 -4.11048 1.33025 1.82929 3.16306 3.26531 3.29892 3.31396 3.53042 4.10352 4.33758 4.55639 5.00624 5.09248 5.14364 5.32468 5.49443 5.57872 5.72133 5.85640 6.04694 6.14850 6.21373 6.34816 6.44899 6.47998 6.57284 6.75310 6.82458 7.13420 7.33453 7.50266 7.61037 7.90453 7.98787 8.11047 8.41516 8.91916 9.46988 10.98950 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.007252 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.213198 B = 3860.054187 C = 4379.509941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.286 1.286 5 H -0.262 1.262 6 H -0.288 1.288 7 C -0.480 4.480 8 H 0.078 0.922 9 C 0.062 3.938 10 H 0.044 0.956 11 C 0.086 3.914 12 N -0.830 5.830 13 C 0.154 3.846 14 C -0.236 4.236 15 C -0.070 4.070 16 C -0.087 4.087 17 C -0.129 4.129 18 C -0.153 4.153 19 C 0.086 3.914 20 F -0.150 7.150 21 C 0.052 3.948 22 N -0.584 5.584 23 H 0.413 0.587 24 H 0.265 0.735 25 H 0.001 0.999 26 H 0.069 0.931 27 H 0.329 0.671 28 H 0.329 0.671 29 H 0.144 0.856 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.347 -5.354 5.006 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.124 4.124 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.187 1.187 6 H -0.214 1.214 7 C -0.518 4.518 8 H 0.096 0.904 9 C 0.042 3.958 10 H 0.062 0.938 11 C -0.045 4.045 12 N -0.358 5.358 13 C 0.044 3.956 14 C -0.259 4.259 15 C -0.075 4.075 16 C -0.106 4.106 17 C -0.149 4.149 18 C -0.173 4.173 19 C 0.064 3.936 20 F -0.129 7.129 21 C -0.056 4.056 22 N -0.185 5.185 23 H 0.250 0.750 24 H 0.075 0.925 25 H 0.019 0.981 26 H 0.088 0.912 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.162 0.838 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 10.369 -5.102 5.226 12.683 hybrid contribution 1.209 1.616 0.243 2.033 sum 11.578 -3.487 5.469 13.271 Atomic orbital electron populations 1.69886 1.06303 1.27024 1.49691 1.25011 0.94623 0.98662 0.94088 0.86886 0.80564 0.84022 0.77839 1.21249 1.18681 1.21431 1.20540 0.87335 0.95093 1.48795 0.90379 1.18106 0.98437 0.93682 0.85624 0.93785 1.21756 0.94446 0.97073 0.91231 1.58377 1.67195 1.06561 1.03712 1.21552 0.93387 0.94082 0.86598 1.21227 1.15994 0.94001 0.94682 1.19188 1.02860 0.91295 0.94192 1.20267 0.99817 0.96484 0.94047 1.20308 1.03549 0.96889 0.94144 1.20607 1.05829 0.90674 1.00187 1.16736 1.08070 0.82197 0.86567 1.91436 1.94699 1.47553 1.79170 1.18189 1.06922 0.90306 0.90170 1.41854 1.60839 1.08455 1.07392 0.75037 0.92547 0.98060 0.91234 0.85877 0.85998 0.83809 0.85880 0.85757 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.64 26.95 -169.99 -4.58 16.06 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.26 -5.66 6.27 56.52 0.35 -5.31 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.48 -12.72 8.57 -34.44 -0.30 -13.01 16 8 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 9 C 0.06 1.34 2.39 -92.92 -0.22 1.12 16 10 H 0.04 0.96 4.78 -51.93 -0.25 0.71 16 11 C 0.09 1.62 5.58 -3.82 -0.02 1.59 16 12 N -0.83 -14.93 9.31 -10.37 -0.10 -15.02 16 13 C 0.15 3.17 6.01 -81.78 -0.49 2.68 16 14 C -0.24 -4.52 10.19 -37.67 -0.38 -4.90 16 15 C -0.07 -1.26 6.37 -105.14 -0.67 -1.93 16 16 C -0.09 -1.30 10.05 -39.63 -0.40 -1.70 16 17 C -0.13 -1.71 9.97 -39.96 -0.40 -2.11 16 18 C -0.15 -2.18 9.99 -39.47 -0.39 -2.58 16 19 C 0.09 1.47 7.32 -39.29 -0.29 1.18 16 20 F -0.15 -2.56 17.27 2.25 0.04 -2.52 16 21 C 0.05 0.98 7.26 -83.91 -0.61 0.37 16 22 N -0.58 -11.46 6.07 -6.91 -0.04 -11.50 16 23 H 0.41 7.58 8.96 -40.82 -0.37 7.22 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 27 H 0.33 5.64 8.55 -39.29 -0.34 5.31 16 28 H 0.33 4.82 9.08 -39.29 -0.36 4.46 16 29 H 0.14 2.52 7.43 -52.48 -0.39 2.13 16 30 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 278.20 15.07 4.19 4.19 Total: -1.00 -30.19 278.20 -7.37 -37.55 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -3.38 Total: 14.32 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -4.27 Total: -17.21 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.64 Total: -52.38 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.04 Total: -2.52 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.58 Total: 16.06 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.19 -7.37 -37.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.356 kcal (2) G-P(sol) polarization free energy of solvation -30.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds