Wall clock time and date at job start Mon Mar 30 2020 06:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99748 * 2 1 4 4 H 1.48499 * 109.47064 * 94.93123 * 3 2 1 5 5 H 1.48505 * 109.47070 * 214.92785 * 3 2 1 6 6 H 1.48497 * 109.47729 * 334.93092 * 3 2 1 7 7 C 1.37878 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00498 * 7.63805 * 7 2 1 9 9 C 1.50702 * 119.99344 * 187.63813 * 7 2 1 10 10 H 1.09001 * 109.47374 * 359.61149 * 9 7 2 11 11 C 1.53002 * 109.47060 * 239.61139 * 9 7 2 12 12 N 1.46900 * 109.47011 * 65.44141 * 11 9 7 13 13 C 1.50697 * 109.46994 * 119.61577 * 9 7 2 14 14 C 1.34251 * 125.04322 * 84.69220 * 13 9 7 15 15 C 1.46482 * 107.01217 * 179.89422 * 14 13 9 16 16 C 1.39702 * 134.01429 * 180.10431 * 15 14 13 17 17 C 1.36598 * 119.80753 * 180.33026 * 16 15 14 18 18 C 1.38827 * 120.55207 * 359.95261 * 17 16 15 19 19 C 1.37946 * 120.63395 * 0.02562 * 18 17 16 20 20 F 1.35103 * 120.13407 * 179.97438 * 19 18 17 21 21 C 1.39316 * 119.73718 * 0.02562 * 19 18 17 22 22 N 1.36797 * 125.03513 * 264.99408 * 13 9 7 23 23 H 0.96997 * 125.07178 * 359.94559 * 22 13 9 24 24 H 0.96995 * 120.00173 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47282 * 185.44609 * 11 9 7 26 26 H 1.09005 * 109.47347 * 305.44565 * 11 9 7 27 27 H 1.00895 * 110.99831 * 65.30710 * 12 11 9 28 28 H 1.00905 * 110.99582 * 189.25232 * 12 11 9 29 29 H 1.08003 * 126.49132 * 0.02562 * 14 13 9 30 30 H 1.08005 * 120.09240 * 0.32555 * 16 15 14 31 31 H 1.08004 * 119.72088 * 179.97438 * 17 16 15 32 32 H 1.07999 * 119.69213 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6008 1.9862 1.3949 5 1 3.4907 1.4725 -0.8016 6 1 1.3984 2.6805 -0.5932 7 6 2.0045 -1.1941 -0.0005 8 1 1.4718 -2.1252 -0.1253 9 6 3.5015 -1.1998 0.1729 10 1 3.8592 -0.1754 0.2766 11 6 4.1542 -1.8466 -1.0504 12 7 3.9125 -1.0105 -2.2338 13 6 3.8610 -1.9849 1.4080 14 6 4.0123 -3.3180 1.4571 15 6 4.3606 -3.6592 2.8384 16 6 4.6385 -4.8567 3.5020 17 6 4.9309 -4.8417 4.8362 18 6 4.9555 -3.6452 5.5398 19 6 4.6848 -2.4508 4.9050 20 9 4.7111 -1.2923 5.5997 21 6 4.3831 -2.4439 3.5449 22 7 4.0758 -1.4455 2.6466 23 1 4.0202 -0.5010 2.8605 24 1 -0.4850 0.8400 0.0004 25 1 5.2274 -1.9387 -0.8836 26 1 3.7252 -2.8358 -1.2108 27 1 4.3743 -0.1177 -2.1461 28 1 4.2000 -1.4850 -3.0766 29 1 3.9008 -4.0079 0.6337 30 1 4.6221 -5.7917 2.9616 31 1 5.1452 -5.7684 5.3479 32 1 5.1889 -3.6494 6.5943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054249.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:12 Heat of formation + Delta-G solvation = -15.331630 kcal Electronic energy + Delta-G solvation = -17547.718564 eV Core-core repulsion = 14614.768988 eV Total energy + Delta-G solvation = -2932.949576 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.86843 -42.13823 -38.24771 -36.57421 -34.28966 -32.55790 -31.72656 -30.06211 -28.75010 -26.03356 -23.81361 -22.90281 -22.40226 -20.62046 -19.25745 -19.08409 -17.86825 -16.95248 -16.76774 -16.57816 -16.43755 -15.76881 -15.39832 -15.16414 -14.87703 -14.65675 -14.22193 -14.15131 -13.82278 -13.29430 -12.91032 -12.62398 -12.58595 -12.47784 -12.19277 -11.93854 -11.73148 -11.21295 -10.70668 -10.45236 -9.28025 -9.10914 -8.53247 -8.25303 -6.25675 0.07333 0.60659 1.29318 1.36471 1.45430 1.80680 2.14137 2.35819 2.86419 3.13806 3.31752 3.77374 3.83655 4.04335 4.18895 4.27145 4.43141 4.47255 4.59330 4.74117 4.89204 4.94284 5.01348 5.18825 5.26305 5.33496 5.56891 5.61709 5.86176 5.95042 6.19793 6.30543 6.50092 6.55855 6.77057 6.87069 7.36413 8.91864 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.007252 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.213198 B = 3860.054187 C = 4379.509941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.018 3.982 3 Si 0.938 3.062 4 H -0.279 1.279 5 H -0.230 1.230 6 H -0.296 1.296 7 C -0.471 4.471 8 H 0.030 0.970 9 C 0.066 3.934 10 H 0.045 0.955 11 C 0.094 3.906 12 N -0.847 5.847 13 C 0.123 3.877 14 C -0.233 4.233 15 C -0.095 4.095 16 C -0.086 4.086 17 C -0.118 4.118 18 C -0.135 4.135 19 C 0.057 3.943 20 F -0.156 7.156 21 C 0.032 3.968 22 N -0.593 5.593 23 H 0.413 0.587 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.336 0.664 28 H 0.348 0.652 29 H 0.154 0.846 30 H 0.151 0.849 31 H 0.170 0.830 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.931 -6.616 6.243 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.205 1.205 5 H -0.153 1.153 6 H -0.223 1.223 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.045 3.955 10 H 0.063 0.937 11 C -0.038 4.038 12 N -0.378 5.378 13 C 0.013 3.987 14 C -0.257 4.257 15 C -0.100 4.100 16 C -0.104 4.104 17 C -0.137 4.137 18 C -0.154 4.154 19 C 0.036 3.964 20 F -0.135 7.135 21 C -0.076 4.076 22 N -0.195 5.195 23 H 0.249 0.751 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.187 0.813 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.998 -6.388 6.453 15.855 hybrid contribution 0.451 1.776 -0.012 1.833 sum 13.448 -4.612 6.441 15.608 Atomic orbital electron populations 1.70057 1.08380 1.27726 1.52896 1.25842 0.95242 1.02591 0.94209 0.85911 0.80221 0.78976 0.78554 1.20523 1.15309 1.22253 1.20671 0.90003 0.92997 1.47233 0.95123 1.18000 0.95272 0.94506 0.87678 0.93716 1.21576 0.95548 0.96517 0.90114 1.58314 1.67943 1.07194 1.04384 1.21283 0.96250 0.94601 0.86599 1.21473 1.14660 0.93705 0.95843 1.19469 1.04344 0.92525 0.93704 1.20696 0.98418 0.96307 0.94987 1.20843 1.01170 0.98199 0.93451 1.21137 1.02767 0.89808 1.01735 1.17096 1.09970 0.83143 0.86240 1.91415 1.94925 1.48080 1.79073 1.18588 1.07591 0.90381 0.91028 1.41853 1.61460 1.08745 1.07424 0.75087 0.92882 0.95429 0.91765 0.85155 0.83847 0.82886 0.83137 0.81263 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.39 13.96 21.45 0.30 -59.09 16 2 C 0.02 1.02 5.47 84.65 0.46 1.48 16 3 Si 0.94 43.04 26.95 68.60 1.85 44.89 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.23 -9.23 6.27 99.48 0.62 -8.61 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.47 -25.82 8.57 25.60 0.22 -25.60 16 8 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 9 C 0.07 2.85 2.39 -12.29 -0.03 2.82 16 10 H 0.04 1.91 4.78 -2.39 -0.01 1.90 16 11 C 0.09 3.42 5.58 86.30 0.48 3.90 16 12 N -0.85 -29.26 9.31 -186.71 -1.74 -31.00 16 13 C 0.12 5.06 6.01 40.87 0.25 5.31 16 14 C -0.23 -8.85 10.19 23.51 0.24 -8.61 16 15 C -0.10 -3.31 6.37 -20.20 -0.13 -3.44 16 16 C -0.09 -2.24 10.05 22.24 0.22 -2.02 16 17 C -0.12 -2.53 9.97 22.03 0.22 -2.31 16 18 C -0.13 -3.32 9.99 22.34 0.22 -3.10 16 19 C 0.06 1.85 7.32 22.46 0.16 2.02 16 20 F -0.16 -5.19 17.27 44.97 0.78 -4.41 16 21 C 0.03 1.17 7.26 39.04 0.28 1.45 16 22 N -0.59 -23.44 6.07 -175.78 -1.07 -24.50 16 23 H 0.41 15.45 8.96 -92.71 -0.83 14.62 16 24 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 2.38 7.47 -2.38 -0.02 2.36 16 27 H 0.34 10.77 8.55 -89.70 -0.77 10.01 16 28 H 0.35 9.60 9.08 -89.69 -0.81 8.78 16 29 H 0.15 5.30 7.43 -2.91 -0.02 5.27 16 30 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 31 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 32 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -68.54 278.20 1.42 -67.12 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -1.31 Total: 35.08 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: 2.61 Total: -28.09 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -2.51 Total: -114.59 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.85 Total: 44.89 kcal Total: -68.54 1.42 -67.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054249.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.788 kcal (2) G-P(sol) polarization free energy of solvation -68.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds