Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48505 * 109.46677 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47182 * 119.99712 * 3 2 1 7 7 C 1.37881 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00022 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47243 * 300.00317 * 9 7 2 11 11 C 1.52999 * 109.47081 * 60.00148 * 9 7 2 12 12 N 1.46897 * 109.47179 * 184.99635 * 11 9 7 13 13 C 1.50699 * 109.47065 * 179.97438 * 9 7 2 14 14 C 1.34246 * 125.04208 * 275.16112 * 13 9 7 15 15 C 1.46481 * 107.01266 * 180.23625 * 14 13 9 16 16 C 1.39701 * 134.01058 * 179.71808 * 15 14 13 17 17 C 1.36600 * 119.80647 * 180.02562 * 16 15 14 18 18 C 1.38834 * 120.54866 * 359.97438 * 17 16 15 19 19 C 1.37939 * 120.63687 * 0.02562 * 18 17 16 20 20 F 1.35094 * 120.13048 * 179.97438 * 19 18 17 21 21 C 1.39324 * 119.73483 * 359.97438 * 19 18 17 22 22 N 1.36797 * 125.03542 * 94.99721 * 13 9 7 23 23 H 0.97001 * 125.07726 * 0.02562 * 22 13 9 24 24 H 0.97000 * 119.99808 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47146 * 304.99888 * 11 9 7 26 26 H 1.09002 * 109.46956 * 64.99777 * 11 9 7 27 27 H 1.00902 * 111.00499 * 179.97438 * 12 11 9 28 28 H 1.00896 * 111.00531 * 303.95384 * 12 11 9 29 29 H 1.08001 * 126.49197 * 0.02562 * 14 13 9 30 30 H 1.08004 * 120.09416 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.72790 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.68456 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 7 -0.4515 -3.7956 -1.1903 13 6 2.2302 -3.6447 0.0005 14 6 2.8062 -4.1663 -1.0941 15 6 3.6759 -5.2553 -0.6431 16 6 4.5168 -6.1598 -1.2961 17 6 5.2144 -7.0836 -0.5709 18 6 5.0955 -7.1315 0.8115 19 6 4.2712 -6.2483 1.4772 20 9 4.1629 -6.3044 2.8226 21 6 3.5509 -5.2982 0.7565 22 7 2.6663 -4.3050 1.1164 23 1 2.3913 -4.1060 2.0250 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2755 -1.7048 -1.2954 26 1 1.0040 -2.6124 -2.1365 27 1 -1.0419 -3.8721 -2.0050 28 1 0.1238 -4.6174 -1.0819 29 1 2.6543 -3.8462 -2.1143 30 1 4.6150 -6.1288 -2.3713 31 1 5.8644 -7.7820 -1.0770 32 1 5.6539 -7.8674 1.3711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261054250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = 0.094232 kcal Electronic energy + Delta-G solvation = -17531.747831 eV Core-core repulsion = 14599.467171 eV Total energy + Delta-G solvation = -2932.280660 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.61301 -40.78215 -36.92199 -34.92558 -32.34517 -31.08503 -29.83916 -28.70974 -27.14536 -24.04704 -22.52865 -21.68166 -21.00024 -19.07991 -17.68836 -16.70954 -16.56141 -15.54884 -15.45794 -15.12817 -14.56861 -14.45151 -14.16693 -13.55055 -13.44826 -13.06666 -12.61320 -12.34382 -12.01234 -11.51346 -11.29532 -11.13365 -11.02008 -10.83411 -10.57937 -10.43187 -9.91332 -9.48270 -9.10285 -8.61295 -7.78824 -7.71291 -7.17264 -6.18034 -4.28718 1.31238 1.80904 3.23031 3.25084 3.28260 3.36380 3.54840 4.08029 4.31000 4.53781 5.02217 5.08819 5.11488 5.41107 5.55374 5.66505 5.72331 6.01636 6.16176 6.32485 6.39884 6.51413 6.60559 6.69243 6.80336 7.08087 7.16483 7.38820 7.50558 7.71962 7.78841 7.98380 8.06685 8.21776 8.32206 8.75102 9.37649 10.85872 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.006339 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.731663 B = 4416.273817 C = 4719.120078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.066 3.934 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.060 0.940 9 C 0.100 3.900 10 H 0.047 0.953 11 C 0.071 3.929 12 N -0.855 5.855 13 C 0.161 3.839 14 C -0.241 4.241 15 C -0.071 4.071 16 C -0.088 4.088 17 C -0.130 4.130 18 C -0.153 4.153 19 C 0.087 3.913 20 F -0.149 7.149 21 C 0.051 3.949 22 N -0.582 5.582 23 H 0.416 0.584 24 H 0.265 0.735 25 H 0.111 0.889 26 H 0.006 0.994 27 H 0.323 0.677 28 H 0.324 0.676 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 -10.354 -1.593 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.137 4.137 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.081 3.919 10 H 0.065 0.935 11 C -0.059 4.059 12 N -0.383 5.383 13 C 0.052 3.948 14 C -0.264 4.264 15 C -0.077 4.077 16 C -0.107 4.107 17 C -0.149 4.149 18 C -0.173 4.173 19 C 0.065 3.935 20 F -0.128 7.128 21 C -0.058 4.058 22 N -0.184 5.184 23 H 0.252 0.748 24 H 0.075 0.925 25 H 0.129 0.871 26 H 0.024 0.976 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.311 -9.832 -0.764 11.201 hybrid contribution 0.928 0.694 -0.145 1.168 sum 6.239 -9.138 -0.909 11.102 Atomic orbital electron populations 1.69868 1.05810 1.27154 1.49076 1.24972 0.94956 0.99269 0.94462 0.86535 0.79538 0.82450 0.78855 1.20024 1.21061 1.20174 1.20923 0.93083 0.89096 1.52623 0.92130 1.17738 0.89834 0.87770 0.96605 0.93495 1.22048 0.95455 0.92655 0.95762 1.58965 1.27335 1.05808 1.46207 1.21578 0.95866 0.93205 0.84174 1.21284 1.05486 1.01147 0.98520 1.19199 0.99597 0.98107 0.90788 1.20269 0.96190 0.94617 0.99589 1.20308 1.01670 1.00229 0.92704 1.20612 1.01166 1.00296 0.95266 1.16725 1.01907 0.98818 0.76032 1.91435 1.95325 1.96086 1.29970 1.18203 0.98295 0.94510 0.94754 1.41943 1.38306 1.28418 1.09688 0.74754 0.92452 0.87094 0.97555 0.86613 0.86467 0.83998 0.85970 0.85783 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.71 11.29 55.43 0.63 -23.08 16 2 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 3 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.45 8.55 -34.44 -0.29 -13.74 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.10 2.36 2.43 -92.92 -0.23 2.13 16 10 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 11 C 0.07 1.58 5.77 -3.83 -0.02 1.56 16 12 N -0.86 -16.47 9.62 -10.37 -0.10 -16.57 16 13 C 0.16 3.36 5.15 -81.78 -0.42 2.93 16 14 C -0.24 -4.69 9.72 -37.67 -0.37 -5.05 16 15 C -0.07 -1.28 6.37 -105.15 -0.67 -1.95 16 16 C -0.09 -1.30 10.05 -39.63 -0.40 -1.70 16 17 C -0.13 -1.69 9.97 -39.95 -0.40 -2.08 16 18 C -0.15 -2.14 9.99 -39.47 -0.39 -2.53 16 19 C 0.09 1.44 7.32 -39.29 -0.29 1.15 16 20 F -0.15 -2.47 17.27 2.25 0.04 -2.43 16 21 C 0.05 0.93 7.26 -83.90 -0.61 0.32 16 22 N -0.58 -11.14 6.07 -6.91 -0.04 -11.19 16 23 H 0.42 7.33 8.96 -40.82 -0.37 6.96 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.11 2.80 5.95 -51.93 -0.31 2.49 16 26 H 0.01 0.14 6.92 -51.93 -0.36 -0.22 16 27 H 0.32 5.42 9.08 -39.29 -0.36 5.07 16 28 H 0.32 5.97 7.72 -39.29 -0.30 5.67 16 29 H 0.14 2.65 7.14 -52.49 -0.37 2.28 16 30 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 31 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 277.13 15.07 4.18 4.18 Total: -1.00 -27.27 277.13 -7.80 -35.07 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -3.30 Total: 15.94 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -4.18 Total: -17.32 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.48 Total: -50.84 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.27 -7.80 -35.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.168 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds