Wall clock time and date at job start Mon Mar 30 2020 06:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00113 * 2 1 4 4 H 1.48505 * 109.46677 * 239.99705 * 3 2 1 5 5 H 1.48497 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47182 * 119.99712 * 3 2 1 7 7 C 1.37881 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00022 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47243 * 300.00317 * 9 7 2 11 11 C 1.52999 * 109.47081 * 60.00148 * 9 7 2 12 12 N 1.46897 * 109.47179 * 184.99635 * 11 9 7 13 13 C 1.50699 * 109.47065 * 179.97438 * 9 7 2 14 14 C 1.34246 * 125.04208 * 275.16112 * 13 9 7 15 15 C 1.46481 * 107.01266 * 180.23625 * 14 13 9 16 16 C 1.39701 * 134.01058 * 179.71808 * 15 14 13 17 17 C 1.36600 * 119.80647 * 180.02562 * 16 15 14 18 18 C 1.38834 * 120.54866 * 359.97438 * 17 16 15 19 19 C 1.37939 * 120.63687 * 0.02562 * 18 17 16 20 20 F 1.35094 * 120.13048 * 179.97438 * 19 18 17 21 21 C 1.39324 * 119.73483 * 359.97438 * 19 18 17 22 22 N 1.36797 * 125.03542 * 94.99721 * 13 9 7 23 23 H 0.97001 * 125.07726 * 0.02562 * 22 13 9 24 24 H 0.97000 * 119.99808 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47146 * 304.99888 * 11 9 7 26 26 H 1.09002 * 109.46956 * 64.99777 * 11 9 7 27 27 H 1.00902 * 111.00499 * 179.97438 * 12 11 9 28 28 H 1.00896 * 111.00531 * 303.95384 * 12 11 9 29 29 H 1.08001 * 126.49197 * 0.02562 * 14 13 9 30 30 H 1.08004 * 120.09416 * 0.02562 * 16 15 14 31 31 H 1.08004 * 119.72790 * 180.02562 * 17 16 15 32 32 H 1.08003 * 119.68456 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3719 -2.5805 -1.2490 12 7 -0.4515 -3.7956 -1.1903 13 6 2.2302 -3.6447 0.0005 14 6 2.8062 -4.1663 -1.0941 15 6 3.6759 -5.2553 -0.6431 16 6 4.5168 -6.1598 -1.2961 17 6 5.2144 -7.0836 -0.5709 18 6 5.0955 -7.1315 0.8115 19 6 4.2712 -6.2483 1.4772 20 9 4.1629 -6.3044 2.8226 21 6 3.5509 -5.2982 0.7565 22 7 2.6663 -4.3050 1.1164 23 1 2.3913 -4.1060 2.0250 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2755 -1.7048 -1.2954 26 1 1.0040 -2.6124 -2.1365 27 1 -1.0419 -3.8721 -2.0050 28 1 0.1238 -4.6174 -1.0819 29 1 2.6543 -3.8462 -2.1143 30 1 4.6150 -6.1288 -2.3713 31 1 5.8644 -7.7820 -1.0770 32 1 5.6539 -7.8674 1.3711 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261054250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:15 Heat of formation + Delta-G solvation = -17.190788 kcal Electronic energy + Delta-G solvation = -17532.497366 eV Core-core repulsion = 14599.467171 eV Total energy + Delta-G solvation = -2933.030195 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85647 -42.16276 -38.27185 -36.57643 -34.23874 -32.41998 -31.42619 -30.01303 -28.69038 -25.93887 -23.98025 -22.98773 -22.43223 -20.65327 -19.09844 -18.48768 -17.95003 -16.99997 -16.74666 -16.63585 -16.21008 -15.97535 -15.44130 -15.16273 -14.94351 -14.54649 -13.99147 -13.86228 -13.73671 -13.03481 -12.77251 -12.64141 -12.42042 -12.38447 -12.33220 -12.13259 -11.69673 -11.34978 -10.60258 -10.45327 -9.36511 -9.12429 -8.55676 -8.15405 -6.34608 0.07408 0.60908 1.41341 1.41613 1.49812 1.81540 2.15633 2.41200 2.86371 3.08636 3.31979 3.78170 4.02729 4.05363 4.07382 4.40773 4.47098 4.57561 4.75939 4.85108 4.96447 5.02591 5.20629 5.32609 5.38896 5.54269 5.62761 5.79098 5.85441 6.04796 6.14396 6.25449 6.50201 6.57920 6.68740 6.85281 7.34874 8.85550 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.026591 B = 0.006339 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.731663 B = 4416.273817 C = 4719.120078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.534 4.534 8 H 0.049 0.951 9 C 0.107 3.893 10 H 0.012 0.988 11 C 0.085 3.915 12 N -0.853 5.853 13 C 0.134 3.866 14 C -0.237 4.237 15 C -0.093 4.093 16 C -0.086 4.086 17 C -0.117 4.117 18 C -0.134 4.134 19 C 0.060 3.940 20 F -0.155 7.155 21 C 0.033 3.967 22 N -0.589 5.589 23 H 0.415 0.585 24 H 0.266 0.734 25 H 0.081 0.919 26 H 0.009 0.991 27 H 0.340 0.660 28 H 0.332 0.668 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -12.165 -2.539 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.176 4.176 3 Si 0.782 3.218 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.068 0.932 9 C 0.087 3.913 10 H 0.030 0.970 11 C -0.046 4.046 12 N -0.383 5.383 13 C 0.025 3.975 14 C -0.261 4.261 15 C -0.099 4.099 16 C -0.105 4.105 17 C -0.136 4.136 18 C -0.154 4.154 19 C 0.039 3.961 20 F -0.134 7.134 21 C -0.074 4.074 22 N -0.191 5.191 23 H 0.252 0.748 24 H 0.075 0.925 25 H 0.099 0.901 26 H 0.027 0.973 27 H 0.152 0.848 28 H 0.144 0.856 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.346 -11.662 -1.717 13.890 hybrid contribution 0.380 1.095 0.146 1.168 sum 7.727 -10.567 -1.571 13.185 Atomic orbital electron populations 1.69990 1.06928 1.27769 1.49673 1.25665 0.95677 1.02145 0.94140 0.85634 0.78438 0.78966 0.78791 1.19471 1.20447 1.20163 1.21160 0.92742 0.90702 1.52651 0.93233 1.17445 0.90052 0.88333 0.95481 0.97036 1.21682 0.94906 0.92719 0.95291 1.58809 1.27154 1.05064 1.47268 1.21109 0.97145 0.93827 0.85462 1.21375 1.05247 1.01373 0.98079 1.19403 1.00794 0.98867 0.90796 1.20673 0.94958 0.93696 1.01160 1.20835 1.00772 0.99710 0.92234 1.21141 0.99117 0.99090 0.96050 1.17060 1.03238 0.99750 0.76078 1.91418 1.95493 1.96173 1.30295 1.18577 0.98519 0.94774 0.95562 1.41881 1.38922 1.28969 1.09302 0.74796 0.92455 0.90051 0.97305 0.84805 0.85595 0.83773 0.83363 0.81294 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.13 11.29 21.45 0.24 -49.89 16 2 C 0.02 1.30 5.29 84.65 0.45 1.75 16 3 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.53 -28.66 8.55 25.60 0.22 -28.44 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.11 5.24 2.43 -12.29 -0.03 5.21 16 10 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 11 C 0.09 3.91 5.77 86.30 0.50 4.41 16 12 N -0.85 -33.27 9.62 -186.72 -1.80 -35.07 16 13 C 0.13 5.74 5.15 40.87 0.21 5.95 16 14 C -0.24 -9.22 9.72 23.51 0.23 -8.99 16 15 C -0.09 -3.22 6.37 -20.20 -0.13 -3.35 16 16 C -0.09 -2.23 10.05 22.24 0.22 -2.01 16 17 C -0.12 -2.43 9.97 22.03 0.22 -2.21 16 18 C -0.13 -3.19 9.99 22.34 0.22 -2.97 16 19 C 0.06 1.90 7.32 22.46 0.16 2.06 16 20 F -0.15 -4.98 17.27 44.97 0.78 -4.21 16 21 C 0.03 1.20 7.26 39.04 0.28 1.49 16 22 N -0.59 -23.27 6.07 -175.78 -1.07 -24.34 16 23 H 0.42 15.53 8.96 -92.71 -0.83 14.70 16 24 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 25 H 0.08 4.26 5.95 -2.39 -0.01 4.24 16 26 H 0.01 0.39 6.92 -2.39 -0.02 0.38 16 27 H 0.34 11.30 9.08 -89.69 -0.81 10.49 16 28 H 0.33 12.29 7.72 -89.70 -0.69 11.59 16 29 H 0.14 5.37 7.14 -2.91 -0.02 5.35 16 30 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 31 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -60.34 277.13 1.59 -58.75 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: -1.15 Total: 37.39 kcal Atomic # 6 Polarization: -29.66 SS G_CDS: 2.56 Total: -27.10 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -2.62 Total: -109.30 kcal Atomic # 9 Polarization: -4.98 SS G_CDS: 0.78 Total: -4.21 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -60.34 1.59 -58.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261054250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.562 kcal (2) G-P(sol) polarization free energy of solvation -60.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds