Wall clock time and date at job start Mon Mar 30 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38330 * 120.06735 * 2 1 4 4 C 1.38268 * 120.58462 * 179.71757 * 3 2 1 5 5 C 1.38623 * 119.75623 * 0.06742 * 4 3 2 6 6 C 1.37548 * 119.38823 * 0.31764 * 5 4 3 7 7 C 1.38343 * 120.07683 * 179.97438 * 2 1 3 8 8 S 1.77538 * 118.62150 * 179.40275 * 6 5 4 9 9 C 1.82038 * 101.34975 * 66.99089 * 8 6 5 10 10 C 1.51475 * 109.95378 * 278.97742 * 9 8 6 11 11 C 1.51190 * 116.25798 * 69.80968 * 10 9 8 12 12 C 1.51301 * 118.91565 * 180.48413 * 5 4 3 13 13 H 1.08995 * 109.71143 * 344.00477 * 12 5 4 14 14 C 1.50701 * 109.58738 * 223.63672 * 12 5 4 15 15 H 1.07998 * 120.00039 * 356.64891 * 14 12 5 16 16 C 1.37880 * 119.99493 * 176.91857 * 14 12 5 17 17 N 1.31512 * 120.00302 * 359.73264 * 16 14 12 18 18 Si 1.86803 * 119.99632 * 179.72491 * 16 14 12 19 19 H 1.48502 * 109.47095 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46691 * 120.00446 * 18 16 14 21 21 H 1.48499 * 109.47158 * 240.00318 * 18 16 14 22 22 H 1.09001 * 109.47019 * 270.01050 * 1 2 3 23 23 H 1.08996 * 109.47917 * 30.01834 * 1 2 3 24 24 H 1.09001 * 109.47034 * 150.01814 * 1 2 3 25 25 H 1.07998 * 119.70337 * 359.74396 * 3 2 1 26 26 H 1.07997 * 120.11916 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.42131 * 0.07147 * 7 2 1 28 28 H 1.08997 * 109.39364 * 158.82629 * 9 8 6 29 29 H 1.09008 * 109.31205 * 39.06781 * 9 8 6 30 30 H 1.09000 * 108.11857 * 308.04874 * 10 9 8 31 31 H 1.09004 * 108.12427 * 191.57532 * 10 9 8 32 32 H 1.09000 * 109.10443 * 168.19168 * 11 10 9 33 33 H 1.09003 * 109.04821 * 49.12969 * 11 10 9 34 34 H 0.97003 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1972 0.0000 4 6 3.5826 1.2096 0.0059 5 6 4.2815 0.0125 0.0104 6 6 3.5868 -1.1747 0.0023 7 6 2.2003 -1.1972 0.0005 8 16 4.5023 -2.6957 -0.0079 9 6 5.2847 -2.6541 1.6352 10 6 6.5183 -1.7758 1.5982 11 6 6.2781 -0.2915 1.4405 12 6 5.7940 0.0483 0.0280 13 1 6.1413 1.0439 -0.2478 14 6 6.3347 -0.9641 -0.9486 15 1 5.6574 -1.6113 -1.4859 16 6 7.6945 -1.0677 -1.1520 17 7 8.5192 -0.2795 -0.4977 18 14 8.3653 -2.3278 -2.3568 19 1 7.2389 -3.0850 -2.9594 20 1 9.1237 -1.6334 -3.4282 21 1 9.2664 -3.2663 -1.6410 22 1 -0.3633 0.0002 1.0277 23 1 -0.3635 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5136 25 1 1.6563 2.1303 -0.0042 26 1 4.1161 2.1487 0.0062 27 1 1.6685 -2.1371 -0.0002 28 1 5.5689 -3.6652 1.9265 29 1 4.5771 -2.2536 2.3614 30 1 7.1459 -2.1075 0.7711 31 1 7.0743 -1.9330 2.5226 32 1 7.2074 0.2432 1.6373 33 1 5.5248 0.0257 2.1617 34 1 9.4759 -0.3526 -0.6405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261058779.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:54 Heat of formation + Delta-G solvation = 19.050928 kcal Electronic energy + Delta-G solvation = -16333.689917 eV Core-core repulsion = 13936.151706 eV Total energy + Delta-G solvation = -2397.538211 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.98851 -35.98260 -32.34257 -31.85940 -30.37360 -29.10718 -26.16147 -25.14298 -22.59634 -22.22668 -20.68011 -18.97608 -16.30392 -16.07468 -15.25541 -14.88000 -14.31036 -13.99133 -13.74511 -13.50338 -13.31019 -12.80901 -12.35052 -12.19314 -11.93920 -11.74754 -11.59649 -11.14212 -10.89855 -10.69255 -10.51770 -10.31217 -10.04282 -9.77342 -9.29751 -9.10058 -8.85273 -8.27955 -8.23598 -7.72218 -6.19307 -5.91213 -3.78295 1.72035 1.97681 2.70000 3.36547 3.42257 3.45892 3.54105 4.33424 4.56635 5.22951 5.33359 5.42764 5.53822 5.65100 5.67834 5.76191 5.87227 5.96987 6.01763 6.13561 6.20043 6.43182 6.45670 6.59670 6.73651 6.74856 6.96835 7.04758 7.11450 7.27909 7.51203 7.60925 7.77591 7.80604 8.11600 8.45967 9.16692 9.71423 11.18901 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.008708 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.939276 B = 3214.739355 C = 3335.471282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.133 4.133 5 C -0.011 4.011 6 C -0.091 4.091 7 C -0.082 4.082 8 S -0.145 6.145 9 C -0.078 4.078 10 C -0.112 4.112 11 C -0.083 4.083 12 C 0.069 3.931 13 H 0.043 0.957 14 C -0.481 4.481 15 H 0.085 0.915 16 C 0.057 3.943 17 N -0.901 5.901 18 Si 0.880 3.120 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.287 1.287 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.013 0.987 34 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -0.540 3.599 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.129 4.129 4 C -0.153 4.153 5 C -0.014 4.014 6 C -0.203 4.203 7 C -0.104 4.104 8 S 0.092 5.908 9 C -0.225 4.225 10 C -0.150 4.150 11 C -0.121 4.121 12 C 0.050 3.950 13 H 0.061 0.939 14 C -0.520 4.520 15 H 0.103 0.897 16 C -0.142 4.142 17 N -0.541 5.541 18 Si 0.709 3.291 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.213 1.213 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.032 0.968 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.099 -1.433 2.817 10.582 hybrid contribution 0.470 0.441 0.333 0.726 sum -9.628 -0.992 3.150 10.179 Atomic orbital electron populations 1.20657 0.91749 1.02083 1.01548 1.19751 0.95364 0.93112 1.04105 1.20978 0.94353 0.96888 1.00647 1.21321 0.93599 0.98082 1.02271 1.20928 0.99054 0.91100 0.90359 1.21224 0.94759 0.96748 1.07557 1.21138 0.92655 0.97256 0.99351 1.85127 1.59054 1.21696 1.24895 1.23187 1.00967 1.02876 0.95494 1.21024 0.96077 0.96041 1.01870 1.20993 0.99526 0.94968 0.96581 1.18281 0.83586 0.99135 0.94003 0.93851 1.21578 0.91908 1.17239 1.21317 0.89703 1.24796 0.96985 0.96282 0.96140 1.69987 1.02642 1.38748 1.42747 0.86671 0.79078 0.81895 0.81465 1.19269 1.21475 1.21335 0.91955 0.92122 0.92052 0.87007 0.86262 0.86063 0.89340 0.91727 0.87734 0.95207 0.91154 0.96819 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.02 36.00 0.36 -0.86 16 2 C -0.12 -1.92 5.89 -104.55 -0.62 -2.54 16 3 C -0.11 -1.79 9.68 -39.54 -0.38 -2.17 16 4 C -0.13 -2.51 9.66 -39.43 -0.38 -2.89 16 5 C -0.01 -0.24 4.54 -104.44 -0.47 -0.72 16 6 C -0.09 -1.88 5.41 -39.68 -0.21 -2.10 16 7 C -0.08 -1.46 9.51 -39.38 -0.37 -1.83 16 8 S -0.14 -3.02 17.89 -107.50 -1.92 -4.94 16 9 C -0.08 -1.49 6.17 36.39 0.22 -1.26 16 10 C -0.11 -2.42 4.96 -28.41 -0.14 -2.56 16 11 C -0.08 -1.88 4.82 -27.57 -0.13 -2.02 16 12 C 0.07 1.66 2.30 -92.56 -0.21 1.45 16 13 H 0.04 1.14 7.92 -51.93 -0.41 0.72 16 14 C -0.48 -12.55 5.36 -34.44 -0.18 -12.73 16 15 H 0.09 2.27 5.26 -34.46 -0.18 2.09 16 16 C 0.06 1.54 3.75 -17.82 -0.07 1.47 16 17 N -0.90 -24.92 12.22 55.43 0.68 -24.24 16 18 Si 0.88 21.38 29.54 -169.99 -5.02 16.36 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 24 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.12 2.10 7.98 -52.49 -0.42 1.68 16 27 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.06 1.17 8.12 -51.92 -0.42 0.75 16 30 H 0.10 2.58 5.07 -51.93 -0.26 2.32 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.72 7.63 -51.93 -0.40 1.32 16 33 H 0.01 0.28 7.77 -51.93 -0.40 -0.12 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 277.82 15.07 4.19 4.19 Total: -1.00 -27.65 277.82 -9.26 -36.91 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.58 Total: 0.50 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.60 Total: -28.76 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.68 Total: -24.24 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -1.92 Total: -4.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.65 -9.26 -36.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058779.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.959 kcal (2) G-P(sol) polarization free energy of solvation -27.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds