Wall clock time and date at job start Mon Mar 30 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38330 * 120.06735 * 2 1 4 4 C 1.38268 * 120.58462 * 179.71757 * 3 2 1 5 5 C 1.38623 * 119.75623 * 0.06742 * 4 3 2 6 6 C 1.37548 * 119.38823 * 0.31764 * 5 4 3 7 7 C 1.38343 * 120.07683 * 179.97438 * 2 1 3 8 8 S 1.77538 * 118.62150 * 179.40275 * 6 5 4 9 9 C 1.82038 * 101.34975 * 66.99089 * 8 6 5 10 10 C 1.51475 * 109.95378 * 278.97742 * 9 8 6 11 11 C 1.51190 * 116.25798 * 69.80968 * 10 9 8 12 12 C 1.51301 * 118.91565 * 180.48413 * 5 4 3 13 13 H 1.08995 * 109.71143 * 344.00477 * 12 5 4 14 14 C 1.50701 * 109.58738 * 223.63672 * 12 5 4 15 15 H 1.07998 * 120.00039 * 356.64891 * 14 12 5 16 16 C 1.37880 * 119.99493 * 176.91857 * 14 12 5 17 17 N 1.31512 * 120.00302 * 359.73264 * 16 14 12 18 18 Si 1.86803 * 119.99632 * 179.72491 * 16 14 12 19 19 H 1.48502 * 109.47095 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46691 * 120.00446 * 18 16 14 21 21 H 1.48499 * 109.47158 * 240.00318 * 18 16 14 22 22 H 1.09001 * 109.47019 * 270.01050 * 1 2 3 23 23 H 1.08996 * 109.47917 * 30.01834 * 1 2 3 24 24 H 1.09001 * 109.47034 * 150.01814 * 1 2 3 25 25 H 1.07998 * 119.70337 * 359.74396 * 3 2 1 26 26 H 1.07997 * 120.11916 * 180.02562 * 4 3 2 27 27 H 1.07997 * 120.42131 * 0.07147 * 7 2 1 28 28 H 1.08997 * 109.39364 * 158.82629 * 9 8 6 29 29 H 1.09008 * 109.31205 * 39.06781 * 9 8 6 30 30 H 1.09000 * 108.11857 * 308.04874 * 10 9 8 31 31 H 1.09004 * 108.12427 * 191.57532 * 10 9 8 32 32 H 1.09000 * 109.10443 * 168.19168 * 11 10 9 33 33 H 1.09003 * 109.04821 * 49.12969 * 11 10 9 34 34 H 0.97003 * 120.00296 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1972 0.0000 4 6 3.5826 1.2096 0.0059 5 6 4.2815 0.0125 0.0104 6 6 3.5868 -1.1747 0.0023 7 6 2.2003 -1.1972 0.0005 8 16 4.5023 -2.6957 -0.0079 9 6 5.2847 -2.6541 1.6352 10 6 6.5183 -1.7758 1.5982 11 6 6.2781 -0.2915 1.4405 12 6 5.7940 0.0483 0.0280 13 1 6.1413 1.0439 -0.2478 14 6 6.3347 -0.9641 -0.9486 15 1 5.6574 -1.6113 -1.4859 16 6 7.6945 -1.0677 -1.1520 17 7 8.5192 -0.2795 -0.4977 18 14 8.3653 -2.3278 -2.3568 19 1 7.2389 -3.0850 -2.9594 20 1 9.1237 -1.6334 -3.4282 21 1 9.2664 -3.2663 -1.6410 22 1 -0.3633 0.0002 1.0277 23 1 -0.3635 0.8897 -0.5141 24 1 -0.3633 -0.8902 -0.5136 25 1 1.6563 2.1303 -0.0042 26 1 4.1161 2.1487 0.0062 27 1 1.6685 -2.1371 -0.0002 28 1 5.5689 -3.6652 1.9265 29 1 4.5771 -2.2536 2.3614 30 1 7.1459 -2.1075 0.7711 31 1 7.0743 -1.9330 2.5226 32 1 7.2074 0.2432 1.6373 33 1 5.5248 0.0257 2.1617 34 1 9.4759 -0.3526 -0.6405 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058779.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:54 Heat of formation + Delta-G solvation = 6.024555 kcal Electronic energy + Delta-G solvation = -16334.254783 eV Core-core repulsion = 13936.151706 eV Total energy + Delta-G solvation = -2398.103077 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44922 -37.67865 -33.85183 -33.70975 -31.77241 -30.68987 -27.59503 -27.00758 -24.20639 -23.67323 -22.16256 -20.75049 -18.09486 -17.67103 -16.93738 -16.43578 -16.13253 -15.52864 -15.27937 -14.87365 -14.53252 -14.49879 -13.84855 -13.78551 -13.52617 -13.12698 -12.97185 -12.83971 -12.58727 -12.43542 -12.15674 -12.13398 -11.76577 -11.38529 -11.09258 -10.87194 -10.63932 -10.28192 -9.71393 -9.19408 -7.97440 -7.87047 -5.85611 0.30064 0.56579 1.16842 1.40603 1.45795 1.57487 1.89830 2.53699 2.92132 3.35812 4.03690 4.08793 4.09017 4.23894 4.32298 4.50874 4.52379 4.55032 4.77300 4.78978 4.88796 4.93793 4.97972 5.06264 5.15463 5.34023 5.46348 5.49528 5.55224 5.68856 5.72307 5.92415 5.96581 6.05197 6.17793 6.49497 7.09562 7.63976 9.12451 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.008708 C = 0.008393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.939276 B = 3214.739355 C = 3335.471282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.109 4.109 3 C -0.104 4.104 4 C -0.145 4.145 5 C -0.046 4.046 6 C -0.105 4.105 7 C -0.088 4.088 8 S -0.180 6.180 9 C -0.066 4.066 10 C -0.108 4.108 11 C -0.074 4.074 12 C 0.070 3.930 13 H 0.009 0.991 14 C -0.475 4.475 15 H 0.078 0.922 16 C 0.019 3.981 17 N -0.927 5.927 18 Si 0.926 3.074 19 H -0.268 1.268 20 H -0.290 1.290 21 H -0.284 1.284 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.121 0.879 27 H 0.141 0.859 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.025 0.975 34 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.169 -0.877 3.981 13.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.165 4.165 5 C -0.049 4.049 6 C -0.216 4.216 7 C -0.109 4.109 8 S 0.057 5.943 9 C -0.214 4.214 10 C -0.147 4.147 11 C -0.112 4.112 12 C 0.051 3.949 13 H 0.027 0.973 14 C -0.514 4.514 15 H 0.096 0.904 16 C -0.177 4.177 17 N -0.569 5.569 18 Si 0.754 3.246 19 H -0.192 1.192 20 H -0.217 1.217 21 H -0.211 1.211 22 H 0.099 0.901 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.139 0.861 27 H 0.158 0.842 28 H 0.132 0.868 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.863 -1.773 3.194 13.372 hybrid contribution 1.218 0.608 0.222 1.379 sum -11.645 -1.165 3.416 12.192 Atomic orbital electron populations 1.20748 0.88242 1.03668 1.03163 1.20274 0.97765 0.92032 1.01046 1.21352 0.93192 0.98825 0.98836 1.21454 0.95139 0.97263 1.02629 1.20698 0.97450 0.92857 0.93930 1.21313 0.95937 0.95578 1.08771 1.21415 0.91483 0.99049 0.98952 1.85134 1.59899 1.22538 1.26692 1.23166 0.99754 1.03729 0.94715 1.20929 0.97143 0.95395 1.01252 1.20846 0.98366 0.95769 0.96263 1.18089 0.86130 0.96555 0.94139 0.97311 1.21732 0.91744 1.16843 1.21118 0.90402 1.25296 0.97402 0.97595 0.97435 1.70089 1.02535 1.40158 1.44136 0.85962 0.78418 0.80340 0.79917 1.19249 1.21668 1.21070 0.90144 0.90256 0.90885 0.83433 0.86105 0.84161 0.86836 0.90348 0.90816 0.93786 0.93830 0.95658 0.93758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.02 71.24 0.71 -1.15 16 2 C -0.11 -3.04 5.89 -19.82 -0.12 -3.16 16 3 C -0.10 -3.04 9.68 22.30 0.22 -2.82 16 4 C -0.14 -5.36 9.66 22.37 0.22 -5.14 16 5 C -0.05 -2.00 4.54 -19.74 -0.09 -2.09 16 6 C -0.10 -4.20 5.41 22.21 0.12 -4.08 16 7 C -0.09 -2.87 9.51 22.40 0.21 -2.65 16 8 S -0.18 -7.38 17.89 -56.49 -1.01 -8.39 16 9 C -0.07 -2.46 6.17 71.48 0.44 -2.02 16 10 C -0.11 -4.71 4.96 29.50 0.15 -4.56 16 11 C -0.07 -3.47 4.82 30.05 0.14 -3.33 16 12 C 0.07 3.47 2.30 -12.05 -0.03 3.44 16 13 H 0.01 0.49 7.92 -2.39 -0.02 0.47 16 14 C -0.47 -25.38 5.36 25.60 0.14 -25.25 16 15 H 0.08 4.25 5.26 -14.37 -0.08 4.17 16 16 C 0.02 1.06 3.75 84.66 0.32 1.38 16 17 N -0.93 -53.04 12.22 21.45 0.26 -52.77 16 18 Si 0.93 44.65 29.54 68.60 2.03 46.67 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 22 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 24 H 0.07 1.22 8.09 -2.39 -0.02 1.20 16 25 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 26 H 0.12 4.27 7.98 -2.91 -0.02 4.25 16 27 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.08 2.69 8.12 -2.38 -0.02 2.68 16 30 H 0.07 3.70 5.07 -2.39 -0.01 3.69 16 31 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.04 2.21 7.63 -2.39 -0.02 2.20 16 33 H 0.02 1.08 7.77 -2.39 -0.02 1.06 16 34 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -60.87 277.82 4.73 -56.14 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.02 Total: 9.79 kcal Atomic # 6 Polarization: -53.87 SS G_CDS: 2.43 Total: -51.44 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.26 Total: -52.77 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: -7.38 SS G_CDS: -1.01 Total: -8.39 kcal Total: -60.87 4.73 -56.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058779.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.167 kcal (2) G-P(sol) polarization free energy of solvation -60.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds