Wall clock time and date at job start Mon Mar 30 2020 05:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37806 * 119.47715 * 2 1 4 4 C 1.38297 * 120.01570 * 180.24213 * 3 2 1 5 5 C 1.37778 * 119.51251 * 359.81838 * 4 3 2 6 6 C 1.50701 * 119.69042 * 180.24029 * 5 4 3 7 7 C 1.39591 * 120.62127 * 0.25727 * 5 4 3 8 8 C 1.38218 * 119.97424 * 359.34682 * 7 5 4 9 9 C 1.50039 * 124.73922 * 181.34800 * 8 7 5 10 10 C 1.51879 * 113.55889 * 336.66519 * 9 8 7 11 11 H 1.08998 * 109.55184 * 300.71332 * 10 9 8 12 12 C 1.50702 * 109.54873 * 180.51730 * 10 9 8 13 13 H 1.07997 * 120.00793 * 0.02562 * 12 10 9 14 14 C 1.37883 * 119.99438 * 179.97438 * 12 10 9 15 15 N 1.31510 * 120.00041 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99763 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.46952 * 90.00171 * 16 14 12 18 18 H 1.48497 * 109.47166 * 210.00001 * 16 14 12 19 19 H 1.48503 * 109.46916 * 330.00230 * 16 14 12 20 20 C 1.53518 * 108.98359 * 60.56849 * 10 9 8 21 21 S 1.76457 * 117.72746 * 178.67442 * 7 5 4 22 22 H 1.09009 * 109.46895 * 264.23334 * 1 2 3 23 23 H 1.09000 * 109.47130 * 24.23001 * 1 2 3 24 24 H 1.09000 * 109.47379 * 144.23317 * 1 2 3 25 25 H 1.08003 * 119.99304 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.24068 * 180.09353 * 4 3 2 27 27 H 1.08994 * 109.47478 * 90.00147 * 6 5 4 28 28 H 1.08999 * 109.47044 * 209.99622 * 6 5 4 29 29 H 1.08998 * 109.47126 * 329.99319 * 6 5 4 30 30 H 1.08999 * 108.66615 * 97.72041 * 9 8 7 31 31 H 1.09004 * 108.67014 * 215.61069 * 9 8 7 32 32 H 0.96999 * 119.99950 * 180.02562 * 15 14 12 33 33 H 1.09000 * 109.88346 * 46.89569 * 20 10 9 34 34 H 1.09002 * 109.88263 * 167.91061 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.1997 0.0000 4 6 3.5680 1.2127 -0.0051 5 6 4.2580 0.0201 -0.0063 6 6 5.7649 0.0296 -0.0063 7 6 3.5742 -1.1969 -0.0079 8 6 2.1922 -1.2126 0.0055 9 6 1.3515 -2.4549 0.0342 10 6 2.0649 -3.6832 -0.5034 11 1 2.3670 -3.5069 -1.5358 12 6 1.1385 -4.8705 -0.4448 13 1 0.1360 -4.7548 -0.0599 14 6 1.5704 -6.1042 -0.8836 15 7 2.7909 -6.2449 -1.3527 16 14 0.4219 -7.5757 -0.8116 17 1 -0.3433 -7.6688 -2.0808 18 1 1.2170 -8.8153 -0.6209 19 1 -0.5209 -7.4126 0.3241 20 6 3.3073 -3.9555 0.3562 21 16 4.5335 -2.6775 -0.0455 22 1 -0.3633 -0.1033 1.0226 23 1 -0.3633 0.9371 -0.4218 24 1 -0.3634 -0.8338 -0.6006 25 1 1.6365 2.1300 -0.0004 26 1 4.1032 2.1508 -0.0036 27 1 6.1283 0.0308 1.0213 28 1 6.1339 -0.8576 -0.5210 29 1 6.1227 0.9223 -0.5193 30 1 1.0508 -2.6489 1.0638 31 1 0.4550 -2.2835 -0.5616 32 1 3.0946 -7.1127 -1.6617 33 1 3.0463 -3.8998 1.4131 34 1 3.7090 -4.9421 0.1252 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261058811.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:04 Heat of formation + Delta-G solvation = -13.308865 kcal Electronic energy + Delta-G solvation = -15872.965063 eV Core-core repulsion = 13474.023626 eV Total energy + Delta-G solvation = -2398.941437 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.62351 -37.31544 -34.98890 -33.79984 -31.41565 -30.12802 -27.90848 -27.14931 -25.54992 -23.63831 -22.01311 -20.62439 -18.53620 -17.69946 -17.07644 -16.48281 -16.04572 -16.01851 -15.12862 -14.75387 -14.45871 -14.12820 -14.00556 -13.66617 -13.55771 -13.43695 -13.03627 -12.77508 -12.72784 -12.64435 -12.49068 -12.20491 -12.00528 -11.80136 -11.68533 -11.09643 -10.67931 -10.53940 -10.20723 -9.24510 -8.24757 -8.13709 -6.34402 0.37652 0.45265 0.94847 1.40652 1.41892 1.52205 1.73636 2.39418 2.76444 3.11299 3.91024 3.92808 4.09593 4.26928 4.28843 4.41276 4.50007 4.64123 4.69535 4.76340 4.81063 4.83928 4.87097 4.94244 5.02628 5.15117 5.20300 5.35642 5.47883 5.51945 5.62851 5.69200 5.74859 5.82693 6.13984 6.19527 6.75451 7.35415 8.87442 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.029311 B = 0.007448 C = 0.006074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.057331 B = 3758.587898 C = 4608.492722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.108 4.108 7 C -0.091 4.091 8 C -0.099 4.099 9 C -0.072 4.072 10 C 0.052 3.948 11 H 0.000 1.000 12 C -0.532 4.532 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.914 5.914 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.265 1.265 20 C -0.075 4.075 21 S -0.176 6.176 22 H 0.076 0.924 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.155 0.845 26 H 0.159 0.841 27 H 0.079 0.921 28 H 0.053 0.947 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 13.853 3.454 14.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.141 4.141 4 C -0.129 4.129 5 C -0.099 4.099 6 C -0.165 4.165 7 C -0.203 4.203 8 C -0.105 4.105 9 C -0.109 4.109 10 C 0.032 3.968 11 H 0.019 0.981 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.184 4.184 15 N -0.553 5.553 16 Si 0.786 3.214 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.223 4.223 21 S 0.070 5.930 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.080 0.920 25 H 0.172 0.828 26 H 0.176 0.824 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.235 13.418 3.177 13.844 hybrid contribution -1.615 -1.283 0.117 2.066 sum -0.380 12.135 3.293 12.579 Atomic orbital electron populations 1.20919 0.89859 1.03476 1.02796 1.20270 0.97312 0.92048 1.00160 1.21239 0.94515 0.97575 1.00809 1.21210 0.94403 0.97223 1.00077 1.20013 0.97185 0.91171 1.01525 1.20773 0.89770 1.02930 1.03049 1.21547 0.95474 0.96533 1.06781 1.19892 0.92268 0.96360 1.01948 1.20335 0.98195 0.91394 1.00927 1.18545 0.92108 0.92925 0.93176 0.98148 1.21451 0.99196 0.93956 1.42510 0.91918 1.25808 0.96635 1.01719 0.94269 1.69991 1.18057 1.25015 1.42221 0.85509 0.78799 0.78374 0.78733 1.20100 1.20870 1.18919 1.23967 0.98133 0.99352 1.00815 1.84815 1.19358 0.99952 1.88899 0.90546 0.89331 0.92016 0.82754 0.82384 0.90230 0.92795 0.88906 0.92004 0.90329 0.92636 0.92367 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 9.33 71.24 0.66 -2.23 16 2 C -0.10 -3.02 5.89 -19.72 -0.12 -3.14 16 3 C -0.12 -3.12 9.63 22.18 0.21 -2.91 16 4 C -0.11 -2.84 9.69 22.17 0.21 -2.63 16 5 C -0.09 -3.01 5.90 -19.65 -0.12 -3.13 16 6 C -0.11 -2.91 9.49 71.24 0.68 -2.23 16 7 C -0.09 -3.63 6.05 22.59 0.14 -3.49 16 8 C -0.10 -3.90 5.77 -19.83 -0.11 -4.02 16 9 C -0.07 -3.10 3.97 29.27 0.12 -2.98 16 10 C 0.05 2.69 1.99 -11.73 -0.02 2.67 16 11 H 0.00 0.02 8.03 -2.39 -0.02 0.00 16 12 C -0.53 -28.90 8.56 25.60 0.22 -28.69 16 13 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 14 C 0.02 0.84 5.26 84.66 0.45 1.28 16 15 N -0.91 -52.47 11.37 21.45 0.24 -52.23 16 16 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 17 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 20 C -0.07 -3.72 5.70 72.16 0.41 -3.31 16 21 S -0.18 -7.72 19.94 -56.49 -1.13 -8.85 16 22 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.09 1.71 8.02 -2.39 -0.02 1.69 16 24 H 0.06 1.73 5.95 -2.39 -0.01 1.72 16 25 H 0.15 2.78 8.05 -2.91 -0.02 2.76 16 26 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.66 6.54 -2.39 -0.02 1.64 16 29 H 0.09 1.89 8.08 -2.39 -0.02 1.87 16 30 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.08 3.24 5.80 -2.39 -0.01 3.23 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.06 2.80 8.08 -2.39 -0.02 2.78 16 34 H 0.11 5.93 5.96 -2.39 -0.01 5.92 16 Total: -1.00 -62.04 282.44 4.96 -57.08 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.09 Total: 14.01 kcal Atomic # 6 Polarization: -57.53 SS G_CDS: 2.73 Total: -54.80 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.24 Total: -52.23 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -7.72 SS G_CDS: -1.13 Total: -8.85 kcal Total: -62.04 4.96 -57.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261058811.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.774 kcal (2) G-P(sol) polarization free energy of solvation -62.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds