Wall clock time and date at job start Mon Mar 30 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37797 * 119.99708 * 2 1 4 4 C 1.39288 * 121.05996 * 180.11058 * 3 2 1 5 5 C 1.38221 * 118.81135 * 0.54344 * 4 3 2 6 6 C 1.39593 * 119.97632 * 359.02295 * 5 4 3 7 7 C 1.37789 * 120.61832 * 0.76210 * 6 5 4 8 8 C 1.50702 * 120.23696 * 179.90204 * 7 6 5 9 9 S 1.76514 * 122.31586 * 178.37921 * 5 4 3 10 10 C 1.81619 * 102.60828 * 13.23660 * 9 5 4 11 11 C 1.53524 * 107.38148 * 313.68962 * 10 9 5 12 12 H 1.09006 * 109.55154 * 312.71325 * 11 10 9 13 13 C 1.50695 * 109.55479 * 192.40814 * 11 10 9 14 14 H 1.08001 * 119.99866 * 275.30289 * 13 11 10 15 15 C 1.37873 * 120.00667 * 95.29799 * 13 11 10 16 16 N 1.31513 * 120.00807 * 185.72477 * 15 13 11 17 17 Si 1.86800 * 119.99693 * 5.72891 * 15 13 11 18 18 H 1.48501 * 109.47437 * 85.82250 * 17 15 13 19 19 H 1.48505 * 109.47443 * 205.82163 * 17 15 13 20 20 H 1.48504 * 109.47174 * 325.82052 * 17 15 13 21 21 C 1.50036 * 116.44165 * 180.68039 * 4 3 2 22 22 H 1.08997 * 109.47688 * 89.99791 * 1 2 3 23 23 H 1.09000 * 109.47223 * 210.00261 * 1 2 3 24 24 H 1.09002 * 109.46812 * 329.99879 * 1 2 3 25 25 H 1.08003 * 119.47670 * 0.08380 * 3 2 1 26 26 H 1.07999 * 119.69150 * 180.75727 * 6 5 4 27 27 H 1.09000 * 109.46915 * 270.01486 * 8 7 6 28 28 H 1.08996 * 109.47619 * 30.01710 * 8 7 6 29 29 H 1.08996 * 109.46991 * 150.02281 * 8 7 6 30 30 H 1.08991 * 109.88612 * 194.19480 * 10 9 5 31 31 H 1.09003 * 109.88174 * 73.17626 * 10 9 5 32 32 H 0.96993 * 120.00333 * 180.02562 * 16 15 13 33 33 H 1.09003 * 108.66416 * 82.01191 * 21 4 3 34 34 H 1.09000 * 108.56251 * 324.04917 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1934 0.0000 4 6 3.5886 1.2192 -0.0023 5 6 4.2770 0.0208 -0.0161 6 6 3.5761 -1.1864 -0.0068 7 6 2.1983 -1.1978 0.0003 8 6 1.4502 -2.5060 0.0081 9 16 6.0400 -0.0543 -0.0623 10 6 6.5198 1.6541 0.3248 11 6 5.6481 2.5811 -0.5342 12 1 5.6422 2.2251 -1.5644 13 6 6.2015 3.9819 -0.4855 14 1 5.9299 4.6419 0.3251 15 6 7.0546 4.4210 -1.4756 16 7 7.6262 5.6012 -1.3756 17 14 7.3986 3.3395 -2.9593 18 1 6.3496 3.5604 -3.9869 19 1 8.7272 3.6845 -3.5261 20 1 7.3927 1.9135 -2.5445 21 6 4.2317 2.5747 0.0139 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6473 2.1237 0.0014 26 1 4.1188 -2.1201 -0.0052 27 1 1.2648 -2.8247 -1.0177 28 1 2.0449 -3.2616 0.5214 29 1 0.4998 -2.3780 0.5261 30 1 7.5719 1.8070 0.0849 31 1 6.3473 1.8571 1.3817 32 1 8.2260 5.9102 -2.0724 33 1 4.2534 2.9382 1.0413 34 1 3.6235 3.2544 -0.5829 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261065482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:53 Heat of formation + Delta-G solvation = -1.769020 kcal Electronic energy + Delta-G solvation = -15653.463171 eV Core-core repulsion = 13255.022138 eV Total energy + Delta-G solvation = -2398.441032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42845 -35.94502 -33.09336 -32.08526 -31.43478 -28.19420 -26.69596 -25.87234 -24.34222 -21.90391 -20.76920 -19.13505 -17.35506 -16.30632 -15.73362 -14.78068 -14.44146 -14.35772 -14.18333 -13.65436 -12.94151 -12.85581 -12.71638 -12.61003 -12.45734 -12.33809 -11.96042 -11.74472 -11.34322 -11.05702 -10.93204 -10.81605 -10.71924 -9.82574 -9.80286 -9.67917 -9.19267 -8.80225 -8.65756 -8.20262 -6.84576 -6.21993 -4.23577 1.52588 1.62779 2.25840 3.06326 3.26116 3.33519 3.40383 3.89446 4.33159 4.93005 4.98998 5.09005 5.17811 5.20205 5.42441 5.51304 5.63051 5.69922 5.75223 5.83672 5.88184 5.90187 6.02501 6.19935 6.25519 6.35573 6.39590 6.43888 6.61587 6.81573 6.93350 7.02546 7.14478 7.25317 7.56118 8.34535 8.82144 9.40092 10.89869 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.006787 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.382761 B = 4124.252820 C = 4494.102275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.110 4.110 4 C -0.071 4.071 5 C -0.063 4.063 6 C -0.102 4.102 7 C -0.089 4.089 8 C -0.110 4.110 9 S -0.188 6.188 10 C -0.076 4.076 11 C 0.017 3.983 12 H 0.048 0.952 13 C -0.513 4.513 14 H 0.077 0.923 15 C 0.078 3.922 16 N -0.891 5.891 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.255 1.255 21 C -0.076 4.076 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 -12.598 2.374 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.130 4.130 4 C -0.077 4.077 5 C -0.176 4.176 6 C -0.125 4.125 7 C -0.090 4.090 8 C -0.167 4.167 9 S 0.057 5.943 10 C -0.224 4.224 11 C -0.003 4.003 12 H 0.066 0.934 13 C -0.553 4.553 14 H 0.095 0.905 15 C -0.126 4.126 16 N -0.527 5.527 17 Si 0.693 3.307 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.179 1.179 21 C -0.113 4.113 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.138 0.862 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.056 -13.378 2.083 16.865 hybrid contribution -0.416 0.662 -0.577 0.972 sum -10.472 -12.716 1.506 16.541 Atomic orbital electron populations 1.20791 0.91625 1.02395 1.01975 1.19555 0.95616 0.92686 1.02123 1.21119 0.93298 0.97385 1.01155 1.20116 0.93753 0.94916 0.98913 1.21311 0.96427 0.95159 1.04672 1.20697 0.93215 0.96251 1.02379 1.19467 0.93046 0.94755 1.01767 1.20771 0.99858 0.94037 1.02014 1.85123 0.99365 1.21074 1.88764 1.24622 1.04767 0.89048 1.03916 1.19178 0.90123 0.96027 0.95020 0.93419 1.20837 1.28204 0.95250 1.10966 0.90480 1.25049 0.94652 0.94880 0.97989 1.69893 1.29501 1.19140 1.34187 0.86978 0.77894 0.82359 0.83477 1.19915 1.21317 1.17862 1.20431 0.98047 0.90838 1.02004 0.91533 0.91528 0.91868 0.86174 0.86165 0.91490 0.91883 0.91385 0.87942 0.90292 0.92338 0.91108 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 9.61 36.01 0.35 -0.81 16 2 C -0.10 -1.37 5.87 -104.76 -0.61 -1.99 16 3 C -0.11 -1.75 9.13 -39.35 -0.36 -2.11 16 4 C -0.07 -1.32 5.77 -104.56 -0.60 -1.93 16 5 C -0.06 -1.17 6.05 -39.08 -0.24 -1.41 16 6 C -0.10 -1.64 9.32 -39.24 -0.37 -2.01 16 7 C -0.09 -1.25 5.87 -104.76 -0.62 -1.86 16 8 C -0.11 -1.13 9.62 36.01 0.35 -0.79 16 9 S -0.19 -3.67 22.00 -107.50 -2.36 -6.03 16 10 C -0.08 -1.59 5.82 37.43 0.22 -1.38 16 11 C 0.02 0.39 1.68 -92.07 -0.15 0.23 16 12 H 0.05 1.15 5.14 -51.93 -0.27 0.88 16 13 C -0.51 -13.68 8.84 -34.44 -0.30 -13.98 16 14 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 15 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 16 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 17 Si 0.87 21.04 27.05 -169.99 -4.60 16.44 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.25 -6.03 6.74 56.52 0.38 -5.65 16 21 C -0.08 -1.53 4.54 -28.77 -0.13 -1.66 16 22 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.59 5.97 -51.93 -0.31 0.28 16 24 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 25 H 0.12 1.71 8.01 -52.48 -0.42 1.29 16 26 H 0.12 1.76 8.05 -52.49 -0.42 1.34 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 29 H 0.07 0.60 5.98 -51.93 -0.31 0.29 16 30 H 0.10 2.22 8.10 -51.93 -0.42 1.80 16 31 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 32 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 34 H 0.08 1.53 8.00 -51.93 -0.42 1.12 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -28.87 285.84 -9.12 -37.99 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -4.67 Total: 0.37 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.57 Total: -27.63 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.77 Total: -25.46 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.60 Total: 16.44 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.36 Total: -6.03 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.87 -9.12 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.225 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds