Wall clock time and date at job start Mon Mar 30 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37797 * 119.99708 * 2 1 4 4 C 1.39288 * 121.05996 * 180.11058 * 3 2 1 5 5 C 1.38221 * 118.81135 * 0.54344 * 4 3 2 6 6 C 1.39593 * 119.97632 * 359.02295 * 5 4 3 7 7 C 1.37789 * 120.61832 * 0.76210 * 6 5 4 8 8 C 1.50702 * 120.23696 * 179.90204 * 7 6 5 9 9 S 1.76514 * 122.31586 * 178.37921 * 5 4 3 10 10 C 1.81619 * 102.60828 * 13.23660 * 9 5 4 11 11 C 1.53524 * 107.38148 * 313.68962 * 10 9 5 12 12 H 1.09006 * 109.55154 * 312.71325 * 11 10 9 13 13 C 1.50695 * 109.55479 * 192.40814 * 11 10 9 14 14 H 1.08001 * 119.99866 * 275.30289 * 13 11 10 15 15 C 1.37873 * 120.00667 * 95.29799 * 13 11 10 16 16 N 1.31513 * 120.00807 * 185.72477 * 15 13 11 17 17 Si 1.86800 * 119.99693 * 5.72891 * 15 13 11 18 18 H 1.48501 * 109.47437 * 85.82250 * 17 15 13 19 19 H 1.48505 * 109.47443 * 205.82163 * 17 15 13 20 20 H 1.48504 * 109.47174 * 325.82052 * 17 15 13 21 21 C 1.50036 * 116.44165 * 180.68039 * 4 3 2 22 22 H 1.08997 * 109.47688 * 89.99791 * 1 2 3 23 23 H 1.09000 * 109.47223 * 210.00261 * 1 2 3 24 24 H 1.09002 * 109.46812 * 329.99879 * 1 2 3 25 25 H 1.08003 * 119.47670 * 0.08380 * 3 2 1 26 26 H 1.07999 * 119.69150 * 180.75727 * 6 5 4 27 27 H 1.09000 * 109.46915 * 270.01486 * 8 7 6 28 28 H 1.08996 * 109.47619 * 30.01710 * 8 7 6 29 29 H 1.08996 * 109.46991 * 150.02281 * 8 7 6 30 30 H 1.08991 * 109.88612 * 194.19480 * 10 9 5 31 31 H 1.09003 * 109.88174 * 73.17626 * 10 9 5 32 32 H 0.96993 * 120.00333 * 180.02562 * 16 15 13 33 33 H 1.09003 * 108.66416 * 82.01191 * 21 4 3 34 34 H 1.09000 * 108.56251 * 324.04917 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1934 0.0000 4 6 3.5886 1.2192 -0.0023 5 6 4.2770 0.0208 -0.0161 6 6 3.5761 -1.1864 -0.0068 7 6 2.1983 -1.1978 0.0003 8 6 1.4502 -2.5060 0.0081 9 16 6.0400 -0.0543 -0.0623 10 6 6.5198 1.6541 0.3248 11 6 5.6481 2.5811 -0.5342 12 1 5.6422 2.2251 -1.5644 13 6 6.2015 3.9819 -0.4855 14 1 5.9299 4.6419 0.3251 15 6 7.0546 4.4210 -1.4756 16 7 7.6262 5.6012 -1.3756 17 14 7.3986 3.3395 -2.9593 18 1 6.3496 3.5604 -3.9869 19 1 8.7272 3.6845 -3.5261 20 1 7.3927 1.9135 -2.5445 21 6 4.2317 2.5747 0.0139 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6473 2.1237 0.0014 26 1 4.1188 -2.1201 -0.0052 27 1 1.2648 -2.8247 -1.0177 28 1 2.0449 -3.2616 0.5214 29 1 0.4998 -2.3780 0.5261 30 1 7.5719 1.8070 0.0849 31 1 6.3473 1.8571 1.3817 32 1 8.2260 5.9102 -2.0724 33 1 4.2534 2.9382 1.0413 34 1 3.6235 3.2544 -0.5829 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261065482.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:52 Heat of formation + Delta-G solvation = -16.139253 kcal Electronic energy + Delta-G solvation = -15654.086311 eV Core-core repulsion = 13255.022138 eV Total energy + Delta-G solvation = -2399.064172 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.66030 -37.56761 -34.75416 -33.40345 -32.96354 -29.43424 -27.85801 -27.67534 -25.81463 -23.08462 -22.30057 -20.69364 -19.32934 -17.76633 -17.04960 -16.27726 -16.07271 -15.90036 -15.25566 -14.99294 -14.69982 -14.42679 -14.07528 -13.77749 -13.55126 -13.52449 -13.34998 -12.92306 -12.83205 -12.75388 -12.43421 -12.25426 -12.03880 -11.81835 -11.56125 -11.27335 -10.80248 -10.76753 -10.24903 -9.45377 -8.37523 -8.30549 -6.42065 0.27314 0.39504 0.76021 1.29056 1.34048 1.44855 1.52127 2.28792 2.66967 2.98116 3.79968 3.90077 3.98427 4.05580 4.22163 4.30912 4.32245 4.51988 4.65570 4.66624 4.70056 4.78223 4.81689 4.91677 5.01414 5.02828 5.22173 5.25344 5.32829 5.37681 5.39441 5.52825 5.57737 5.73045 6.08395 6.20299 6.64299 7.24271 8.78171 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.032199 B = 0.006787 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.382761 B = 4124.252820 C = 4494.102275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.118 4.118 4 C -0.095 4.095 5 C -0.089 4.089 6 C -0.109 4.109 7 C -0.083 4.083 8 C -0.109 4.109 9 S -0.181 6.181 10 C -0.076 4.076 11 C 0.019 3.981 12 H 0.038 0.962 13 C -0.512 4.512 14 H 0.043 0.957 15 C 0.028 3.972 16 N -0.937 5.937 17 Si 0.925 3.075 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.246 1.246 21 C -0.068 4.068 22 H 0.079 0.921 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.269 0.731 33 H 0.065 0.935 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.491 -15.457 1.936 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.101 4.101 5 C -0.202 4.202 6 C -0.132 4.132 7 C -0.085 4.085 8 C -0.165 4.165 9 S 0.063 5.937 10 C -0.224 4.224 11 C -0.001 4.001 12 H 0.057 0.943 13 C -0.552 4.552 14 H 0.061 0.939 15 C -0.172 4.172 16 N -0.576 5.576 17 Si 0.749 3.251 18 H -0.193 1.193 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.106 4.106 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.090 0.910 25 H 0.151 0.849 26 H 0.151 0.849 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.503 -16.248 1.653 20.568 hybrid contribution 0.179 1.494 -0.362 1.548 sum -12.324 -14.754 1.291 19.267 Atomic orbital electron populations 1.20888 0.88558 1.03977 1.03256 1.20031 0.97806 0.91850 0.99735 1.21317 0.92295 0.99072 1.01077 1.19976 0.95022 0.93726 1.01374 1.21447 0.95506 0.96279 1.06934 1.20936 0.94345 0.95697 1.02236 1.19972 0.92440 0.96674 0.99377 1.20874 1.00397 0.91915 1.03360 1.84947 1.01072 1.18315 1.89341 1.24250 1.03758 0.90836 1.03600 1.19079 0.92025 0.93955 0.95090 0.94337 1.21031 1.27696 0.96811 1.09646 0.93878 1.25770 0.94676 0.96003 1.00725 1.70012 1.31005 1.21102 1.35476 0.86042 0.77854 0.81012 0.80176 1.19327 1.20921 1.16953 1.20224 0.96399 0.92556 1.01390 0.90208 0.89335 0.91039 0.84948 0.84932 0.90081 0.90880 0.89299 0.88961 0.89999 0.92197 0.91645 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.61 71.24 0.68 -1.11 16 2 C -0.09 -2.27 5.87 -19.95 -0.12 -2.39 16 3 C -0.12 -3.55 9.13 22.42 0.20 -3.34 16 4 C -0.10 -3.48 5.77 -19.82 -0.11 -3.59 16 5 C -0.09 -3.22 6.05 22.59 0.14 -3.08 16 6 C -0.11 -3.24 9.32 22.49 0.21 -3.03 16 7 C -0.08 -2.03 5.87 -19.96 -0.12 -2.14 16 8 C -0.11 -1.70 9.62 71.24 0.69 -1.02 16 9 S -0.18 -6.93 22.00 -56.49 -1.24 -8.17 16 10 C -0.08 -3.26 5.82 72.16 0.42 -2.84 16 11 C 0.02 0.88 1.68 -11.74 -0.02 0.86 16 12 H 0.04 1.86 5.14 -2.38 -0.01 1.85 16 13 C -0.51 -28.38 8.84 25.60 0.23 -28.15 16 14 H 0.04 2.62 8.06 -2.91 -0.02 2.59 16 15 C 0.03 1.57 5.47 84.65 0.46 2.03 16 16 N -0.94 -57.05 13.96 21.45 0.30 -56.75 16 17 Si 0.93 44.07 27.05 68.60 1.86 45.93 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 20 H -0.25 -11.27 6.74 99.48 0.67 -10.60 16 21 C -0.07 -2.80 4.54 29.27 0.13 -2.67 16 22 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 1.08 5.97 -2.39 -0.01 1.06 16 24 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 25 H 0.13 3.54 8.01 -2.91 -0.02 3.52 16 26 H 0.13 3.52 8.05 -2.91 -0.02 3.50 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 29 H 0.09 1.05 5.98 -2.39 -0.01 1.03 16 30 H 0.09 4.08 8.10 -2.39 -0.02 4.06 16 31 H 0.08 3.38 8.08 -2.39 -0.02 3.36 16 32 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 33 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.07 2.98 8.00 -2.39 -0.02 2.96 16 Total: -1.00 -63.63 285.84 4.76 -58.87 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.05 Total: 10.60 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 2.79 Total: -50.48 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.30 Total: -56.75 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.86 Total: 45.93 kcal Atomic # 16 Polarization: -6.93 SS G_CDS: -1.24 Total: -8.17 kcal Total: -63.63 4.76 -58.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261065482.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.733 kcal (2) G-P(sol) polarization free energy of solvation -63.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds