Wall clock time and date at job start Mon Mar 30 2020 06:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47198 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99973 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.37750 * 119.67728 * 265.00274 * 13 10 9 15 15 C 1.39048 * 119.95510 * 180.02562 * 14 13 10 16 16 N 1.37820 * 133.40674 * 180.02562 * 15 14 13 17 17 H 0.97004 * 125.06288 * 0.02763 * 16 15 14 18 18 C 1.36811 * 109.86738 * 179.97438 * 16 15 14 19 19 C 1.34240 * 109.93937 * 0.02562 * 18 16 15 20 20 C 1.40668 * 119.47336 * 359.97438 * 15 14 13 21 21 C 1.39639 * 119.96031 * 0.02562 * 20 15 14 22 22 C 1.37827 * 119.62964 * 359.69395 * 21 20 15 23 23 F 1.35099 * 119.83751 * 180.30424 * 22 21 20 24 24 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 26 26 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 27 27 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 28 28 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 29 29 H 1.08008 * 120.02262 * 359.97438 * 14 13 10 30 30 H 1.08001 * 125.02920 * 180.02562 * 18 16 15 31 31 H 1.08005 * 126.49005 * 180.02562 * 19 18 16 32 32 H 1.08001 * 120.18096 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1682 -5.6716 1.0154 15 6 0.4773 -6.8736 0.9089 16 7 0.0180 -7.7870 1.8330 17 1 0.1246 -7.7092 2.7940 18 6 -0.6118 -8.8193 1.1930 19 6 -0.5847 -8.6197 -0.1342 20 6 0.1188 -7.3554 -0.3632 21 6 0.4577 -6.6275 -1.5056 22 6 1.1376 -5.4355 -1.3773 23 9 1.4622 -4.7247 -2.4794 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 3.5701 -2.8178 1.3336 28 1 2.3962 -3.7498 2.0540 29 1 1.4482 -5.2935 1.9876 30 1 -1.0638 -9.6689 1.6831 31 1 -1.0037 -9.2678 -0.8898 32 1 0.1846 -6.9943 -2.4840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:19 Heat of formation + Delta-G solvation = 3.271609 kcal Electronic energy + Delta-G solvation = -17413.117408 eV Core-core repulsion = 14480.974529 eV Total energy + Delta-G solvation = -2932.142879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.23701 -40.98652 -37.35695 -34.68963 -32.50076 -31.36321 -28.91205 -28.50776 -27.83650 -24.48877 -22.62117 -21.67026 -20.57449 -19.60855 -18.10954 -16.81194 -16.57902 -15.70425 -15.14392 -15.06281 -14.56207 -14.08046 -14.05756 -13.49697 -13.34284 -13.16878 -12.63882 -12.49981 -12.26263 -12.10055 -11.58060 -11.10924 -10.85246 -10.70297 -10.45302 -10.28760 -9.92313 -9.48654 -9.15678 -8.45202 -8.00426 -7.59351 -7.47468 -6.05927 -4.10526 1.28994 1.76911 2.82134 3.22187 3.28991 3.35497 3.37721 4.04196 4.40708 4.63112 4.94278 5.02433 5.17772 5.28014 5.32225 5.53107 5.64744 5.80234 5.97390 6.11401 6.16279 6.42185 6.47627 6.70707 6.82942 6.87598 6.89402 7.37395 7.48495 7.57562 7.61632 7.87039 8.02467 8.19454 8.32902 8.95743 9.54355 11.04834 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.005487 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.654857 B = 5101.803995 C = 5338.486166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.003 3.997 10 C 0.128 3.872 11 H 0.083 0.917 12 N -0.839 5.839 13 C -0.061 4.061 14 C -0.094 4.094 15 C 0.087 3.913 16 N -0.597 5.597 17 H 0.414 0.586 18 C 0.047 3.953 19 C -0.206 4.206 20 C -0.098 4.098 21 C -0.116 4.116 22 C 0.083 3.917 23 F -0.137 7.137 24 H 0.261 0.739 25 H 0.022 0.978 26 H 0.017 0.983 27 H 0.348 0.652 28 H 0.327 0.673 29 H 0.130 0.870 30 H 0.167 0.833 31 H 0.144 0.856 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 -16.019 3.158 16.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.036 4.036 10 C 0.016 3.984 11 H 0.101 0.899 12 N -0.368 5.368 13 C -0.064 4.064 14 C -0.115 4.115 15 C -0.019 4.019 16 N -0.200 5.200 17 H 0.251 0.749 18 C -0.079 4.079 19 C -0.232 4.232 20 C -0.103 4.103 21 C -0.136 4.136 22 C 0.063 3.937 23 F -0.115 7.115 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.035 0.965 27 H 0.162 0.838 28 H 0.139 0.861 29 H 0.148 0.852 30 H 0.185 0.815 31 H 0.162 0.838 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.335 -16.540 2.959 16.806 hybrid contribution -0.215 1.972 0.417 2.027 sum -0.549 -14.567 3.376 14.964 Atomic orbital electron populations 1.69974 1.06123 1.26736 1.50120 1.25012 0.94818 0.99300 0.95047 0.86574 0.79769 0.83332 0.78215 1.20575 1.21274 1.19790 1.21135 0.92892 0.90719 1.51535 0.92452 1.19771 0.94348 0.91483 0.97978 1.20452 0.94789 0.89956 0.93188 0.89893 1.59299 1.27812 1.45994 1.03675 1.19859 0.98590 0.97294 0.90670 1.19598 1.00467 0.92432 0.98996 1.18256 1.01467 0.93243 0.88927 1.41747 1.50633 1.19299 1.08347 0.74941 1.21734 1.00115 0.93108 0.92983 1.21593 1.08385 0.98088 0.95089 1.18811 1.03278 0.96575 0.91631 1.20270 1.00968 0.93978 0.98379 1.17180 1.02176 0.91721 0.82671 1.91484 1.90918 1.77739 1.51375 0.92903 0.95944 0.96468 0.83783 0.86082 0.85243 0.81531 0.83839 0.85159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 7 C -0.52 -14.43 8.55 -34.44 -0.29 -14.72 16 8 H 0.06 1.52 7.14 -52.49 -0.38 1.14 16 9 C 0.00 0.07 4.60 -27.88 -0.13 -0.06 16 10 C 0.13 2.72 2.74 -68.86 -0.19 2.53 16 11 H 0.08 1.87 7.78 -51.93 -0.40 1.46 16 12 N -0.84 -15.70 8.78 -5.65 -0.05 -15.75 16 13 C -0.06 -1.20 5.07 -104.52 -0.53 -1.73 16 14 C -0.09 -1.59 9.27 -39.46 -0.37 -1.96 16 15 C 0.09 1.34 7.27 -83.95 -0.61 0.73 16 16 N -0.60 -6.79 6.07 -10.64 -0.06 -6.86 16 17 H 0.41 3.42 8.96 -40.82 -0.37 3.05 16 18 C 0.05 0.47 11.81 -16.74 -0.20 0.28 16 19 C -0.21 -2.51 11.08 -37.67 -0.42 -2.93 16 20 C -0.10 -1.54 6.37 -105.14 -0.67 -2.21 16 21 C -0.12 -1.93 10.07 -39.21 -0.40 -2.32 16 22 C 0.08 1.59 7.23 -39.45 -0.29 1.31 16 23 F -0.14 -2.79 16.53 2.25 0.04 -2.75 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.35 6.64 7.90 -39.29 -0.31 6.33 16 28 H 0.33 5.72 7.18 -39.29 -0.28 5.43 16 29 H 0.13 1.99 6.24 -52.48 -0.33 1.66 16 30 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 279.04 15.07 4.21 4.21 Total: -1.00 -31.85 279.04 -7.65 -39.50 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -3.31 Total: 10.68 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -4.18 Total: -19.48 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.62 Total: -48.57 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.85 -7.65 -39.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.771 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds