Wall clock time and date at job start Mon Mar 30 2020 06:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99555 * 2 1 4 4 H 1.48493 * 109.46844 * 270.00066 * 3 2 1 5 5 H 1.48501 * 109.47198 * 30.00071 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99973 * 3 2 1 7 7 C 1.37871 * 120.00383 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99920 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47310 * 305.00453 * 10 9 7 12 12 N 1.46905 * 109.47027 * 65.00245 * 10 9 7 13 13 C 1.50703 * 109.47072 * 185.00098 * 10 9 7 14 14 C 1.37750 * 119.67728 * 265.00274 * 13 10 9 15 15 C 1.39048 * 119.95510 * 180.02562 * 14 13 10 16 16 N 1.37820 * 133.40674 * 180.02562 * 15 14 13 17 17 H 0.97004 * 125.06288 * 0.02763 * 16 15 14 18 18 C 1.36811 * 109.86738 * 179.97438 * 16 15 14 19 19 C 1.34240 * 109.93937 * 0.02562 * 18 16 15 20 20 C 1.40668 * 119.47336 * 359.97438 * 15 14 13 21 21 C 1.39639 * 119.96031 * 0.02562 * 20 15 14 22 22 C 1.37827 * 119.62964 * 359.69395 * 21 20 15 23 23 F 1.35099 * 119.83751 * 180.30424 * 22 21 20 24 24 H 0.96999 * 120.00227 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46854 * 60.00360 * 9 7 2 26 26 H 1.09002 * 109.47338 * 300.00068 * 9 7 2 27 27 H 1.00901 * 110.99869 * 296.04819 * 12 10 9 28 28 H 1.00896 * 110.99543 * 59.99942 * 12 10 9 29 29 H 1.08008 * 120.02262 * 359.97438 * 14 13 10 30 30 H 1.08001 * 125.02920 * 180.02562 * 18 16 15 31 31 H 1.08005 * 126.49005 * 180.02562 * 19 18 16 32 32 H 1.08001 * 120.18096 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0027 11 1 2.9296 -3.5558 -0.8391 12 7 3.0085 -3.6526 1.2580 13 6 1.4961 -4.9637 -0.1200 14 6 1.1682 -5.6716 1.0154 15 6 0.4773 -6.8736 0.9089 16 7 0.0180 -7.7870 1.8330 17 1 0.1246 -7.7092 2.7940 18 6 -0.6118 -8.8193 1.1930 19 6 -0.5847 -8.6197 -0.1342 20 6 0.1188 -7.3554 -0.3632 21 6 0.4577 -6.6275 -1.5056 22 6 1.1376 -5.4355 -1.3773 23 9 1.4622 -4.7247 -2.4794 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5575 -0.8880 26 1 0.6248 -2.5563 0.8920 27 1 3.5701 -2.8178 1.3336 28 1 2.3962 -3.7498 2.0540 29 1 1.4482 -5.2935 1.9876 30 1 -1.0638 -9.6689 1.6831 31 1 -1.0037 -9.2678 -0.8898 32 1 0.1846 -6.9943 -2.4840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074650.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:18 Heat of formation + Delta-G solvation = -18.420066 kcal Electronic energy + Delta-G solvation = -17414.058030 eV Core-core repulsion = 14480.974529 eV Total energy + Delta-G solvation = -2933.083501 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.73872 -42.07376 -38.80158 -36.25154 -34.49563 -32.57675 -30.32852 -29.71356 -29.63407 -26.23649 -24.10296 -23.18938 -21.56789 -21.12860 -19.36164 -18.52473 -18.14813 -17.08258 -16.71706 -16.60089 -16.40892 -15.44249 -15.18812 -15.05277 -14.66002 -14.46372 -14.17325 -14.13726 -13.81899 -13.43180 -13.30412 -12.93098 -12.57704 -12.34257 -12.14749 -11.85674 -11.72478 -11.21346 -10.67768 -10.62708 -9.56114 -8.97047 -8.60882 -8.23158 -6.36439 0.07364 0.43908 1.38653 1.40366 1.50999 1.86187 2.27053 2.37893 2.74728 3.09411 3.40374 3.68375 3.72258 3.99735 4.14993 4.33334 4.43832 4.55599 4.67422 4.78677 4.82031 5.04681 5.08701 5.22240 5.33441 5.35988 5.58106 5.72044 5.73108 5.79851 6.11842 6.16560 6.32257 6.67421 6.76336 6.79155 7.33571 8.88096 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.035767 B = 0.005487 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.654857 B = 5101.803995 C = 5338.486166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.066 0.934 9 C 0.015 3.985 10 C 0.145 3.855 11 H 0.064 0.936 12 N -0.823 5.823 13 C -0.097 4.097 14 C -0.090 4.090 15 C 0.073 3.927 16 N -0.585 5.585 17 H 0.431 0.569 18 C 0.078 3.922 19 C -0.229 4.229 20 C -0.111 4.111 21 C -0.115 4.115 22 C 0.048 3.952 23 F -0.155 7.155 24 H 0.263 0.737 25 H -0.019 1.019 26 H -0.005 1.005 27 H 0.347 0.653 28 H 0.336 0.664 29 H 0.141 0.859 30 H 0.221 0.779 31 H 0.168 0.832 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.582 -17.982 4.748 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.085 0.915 9 C -0.024 4.024 10 C 0.033 3.967 11 H 0.082 0.918 12 N -0.352 5.352 13 C -0.099 4.099 14 C -0.110 4.110 15 C -0.034 4.034 16 N -0.189 5.189 17 H 0.271 0.729 18 C -0.048 4.048 19 C -0.253 4.253 20 C -0.116 4.116 21 C -0.135 4.135 22 C 0.028 3.972 23 F -0.134 7.134 24 H 0.072 0.928 25 H -0.001 1.001 26 H 0.013 0.987 27 H 0.161 0.839 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.238 0.762 31 H 0.185 0.815 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.345 -18.527 4.584 19.089 hybrid contribution -0.311 2.386 -0.003 2.406 sum -0.656 -16.141 4.581 16.791 Atomic orbital electron populations 1.70121 1.07996 1.27806 1.51319 1.25981 0.95672 1.03422 0.94503 0.85413 0.78839 0.78259 0.78325 1.20289 1.20855 1.18088 1.21537 0.93501 0.91587 1.50944 0.91540 1.19609 0.94460 0.93493 0.94806 1.20021 0.93424 0.89711 0.93592 0.91831 1.59269 1.27266 1.45613 1.03032 1.19707 1.00917 0.97366 0.91923 1.19667 0.99978 0.92912 0.98485 1.18270 1.01570 0.93382 0.90206 1.41873 1.49540 1.18495 1.08987 0.72922 1.22601 0.96963 0.92879 0.92402 1.21971 1.09205 0.97207 0.96917 1.19312 1.03104 0.97961 0.91268 1.20490 0.99994 0.93012 0.99983 1.17523 1.04347 0.93121 0.82250 1.91418 1.91380 1.78431 1.52190 0.92793 1.00095 0.98658 0.83940 0.85076 0.84132 0.76243 0.81468 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.44 0.28 -57.30 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.42 29.54 68.60 2.03 46.44 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.54 -30.43 8.55 25.60 0.22 -30.21 16 8 H 0.07 3.56 7.14 -2.91 -0.02 3.54 16 9 C 0.01 0.82 4.60 29.85 0.14 0.95 16 10 C 0.14 6.46 2.74 44.17 0.12 6.59 16 11 H 0.06 3.04 7.78 -2.39 -0.02 3.02 16 12 N -0.82 -31.23 8.78 -171.79 -1.51 -32.73 16 13 C -0.10 -3.92 5.07 -19.80 -0.10 -4.02 16 14 C -0.09 -3.04 9.27 22.35 0.21 -2.83 16 15 C 0.07 2.14 7.27 38.99 0.28 2.42 16 16 N -0.58 -11.09 6.07 -187.58 -1.14 -12.23 16 17 H 0.43 5.34 8.96 -92.71 -0.83 4.51 16 18 C 0.08 1.17 11.81 83.00 0.98 2.15 16 19 C -0.23 -4.73 11.08 23.51 0.26 -4.47 16 20 C -0.11 -3.31 6.37 -20.20 -0.13 -3.44 16 21 C -0.12 -3.87 10.07 22.51 0.23 -3.64 16 22 C 0.05 1.94 7.23 22.35 0.16 2.11 16 23 F -0.16 -6.84 16.53 44.97 0.74 -6.10 16 24 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 26 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.35 13.31 7.90 -89.69 -0.71 12.60 16 28 H 0.34 11.77 7.18 -89.70 -0.64 11.13 16 29 H 0.14 4.25 6.24 -2.91 -0.02 4.23 16 30 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 31 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -72.45 279.04 2.24 -70.21 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -1.00 Total: 25.52 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 2.83 Total: -33.81 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -2.36 Total: -102.26 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.74 Total: -6.10 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.45 2.24 -70.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074650.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.792 kcal (2) G-P(sol) polarization free energy of solvation -72.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds