Wall clock time and date at job start Mon Mar 30 2020 06:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.46976 * 54.99550 * 10 9 7 12 12 N 1.46900 * 109.46648 * 294.99361 * 10 9 7 13 13 C 1.50696 * 109.46626 * 174.99629 * 10 9 7 14 14 C 1.37767 * 119.67566 * 99.72893 * 13 10 9 15 15 C 1.39051 * 119.95266 * 179.72218 * 14 13 10 16 16 N 1.37813 * 133.40353 * 180.14916 * 15 14 13 17 17 H 0.97006 * 125.07068 * 0.39724 * 16 15 14 18 18 C 1.36824 * 109.86480 * 180.37406 * 16 15 14 19 19 C 1.34234 * 109.93670 * 0.02562 * 18 16 15 20 20 C 1.40673 * 119.46823 * 0.56462 * 15 14 13 21 21 C 1.39619 * 119.96919 * 359.70446 * 20 15 14 22 22 C 1.37836 * 119.62798 * 0.02562 * 21 20 15 23 23 F 1.35104 * 119.83438 * 179.97438 * 22 21 20 24 24 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 26 26 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 27 27 H 1.00901 * 111.00161 * 300.00008 * 12 10 9 28 28 H 1.00894 * 110.99977 * 63.96337 * 12 10 9 29 29 H 1.07996 * 120.01702 * 359.97438 * 14 13 10 30 30 H 1.07994 * 125.03092 * 180.02562 * 18 16 15 31 31 H 1.08003 * 126.48778 * 180.02562 * 19 18 16 32 32 H 1.08006 * 120.18748 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9326 -3.5570 0.8273 12 7 3.0036 -3.6511 -1.2703 13 6 1.4964 -4.9639 0.1117 14 6 1.2498 -5.7186 -1.0142 15 6 0.5643 -6.9236 -0.9058 16 7 0.1773 -7.8785 -1.8209 17 1 0.3534 -7.8408 -2.7741 18 6 -0.4919 -8.8881 -1.1846 19 6 -0.5625 -8.6322 0.1312 20 6 0.1178 -7.3546 0.3567 21 6 0.3697 -6.5769 1.4885 22 6 1.0559 -5.3884 1.3597 23 9 1.3016 -4.6323 2.4520 24 1 -0.4850 -0.8400 0.0004 25 1 0.6281 -2.5591 0.8866 26 1 0.6207 -2.5548 -0.8933 27 1 2.3883 -3.7472 -2.0642 28 1 3.5650 -2.8163 -1.3468 29 1 1.5922 -5.3766 -1.9796 30 1 -0.9026 -9.7615 -1.6692 31 1 -1.0312 -9.2516 0.8817 32 1 0.0281 -6.9042 2.4594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074652.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:22 Heat of formation + Delta-G solvation = -0.188991 kcal Electronic energy + Delta-G solvation = -17461.409593 eV Core-core repulsion = 14529.116651 eV Total energy + Delta-G solvation = -2932.292942 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.30664 -41.05564 -37.46248 -34.84692 -32.67765 -31.41268 -28.98709 -28.57355 -27.52789 -24.27625 -22.65671 -21.82523 -20.63637 -19.82654 -18.15483 -16.92925 -16.85331 -15.84654 -15.38851 -15.09597 -14.15787 -14.13171 -13.78918 -13.58268 -13.43245 -13.24061 -13.13609 -12.59086 -12.43524 -12.18240 -11.44562 -10.97974 -10.92110 -10.64460 -10.50708 -10.28147 -10.09722 -9.57397 -8.63855 -8.40040 -8.09809 -7.67861 -7.55269 -6.40489 -4.11345 1.21459 1.68802 2.75700 3.15732 3.41478 3.44084 3.62240 3.96317 4.51096 4.56347 4.87437 4.96110 5.09233 5.22123 5.37384 5.46624 5.57549 5.72596 5.89708 6.04550 6.08881 6.32854 6.39084 6.55465 6.73904 6.80211 6.81373 7.22715 7.27842 7.34810 7.54565 7.88678 8.02441 8.20144 8.39347 8.81775 9.62050 10.99763 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.036741 B = 0.005503 C = 0.005246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.900537 B = 5086.909095 C = 5336.115126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 1.069 2.931 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.604 4.604 8 H 0.051 0.949 9 C -0.011 4.011 10 C 0.136 3.864 11 H 0.084 0.916 12 N -0.838 5.838 13 C -0.067 4.067 14 C -0.094 4.094 15 C 0.087 3.913 16 N -0.597 5.597 17 H 0.414 0.586 18 C 0.048 3.952 19 C -0.206 4.206 20 C -0.098 4.098 21 C -0.116 4.116 22 C 0.082 3.918 23 F -0.136 7.136 24 H 0.269 0.731 25 H 0.014 0.986 26 H 0.007 0.993 27 H 0.327 0.673 28 H 0.350 0.650 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.145 0.855 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.099 -16.529 -3.157 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.187 4.187 3 Si 0.897 3.103 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.069 0.931 9 C -0.050 4.050 10 C 0.025 3.975 11 H 0.102 0.898 12 N -0.367 5.367 13 C -0.069 4.069 14 C -0.115 4.115 15 C -0.020 4.020 16 N -0.200 5.200 17 H 0.251 0.749 18 C -0.078 4.078 19 C -0.231 4.231 20 C -0.102 4.102 21 C -0.135 4.135 22 C 0.062 3.938 23 F -0.115 7.115 24 H 0.079 0.921 25 H 0.032 0.968 26 H 0.025 0.975 27 H 0.139 0.861 28 H 0.164 0.836 29 H 0.149 0.851 30 H 0.186 0.814 31 H 0.162 0.838 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.287 -15.523 -2.956 15.805 hybrid contribution -0.361 -0.719 -0.417 0.906 sum -0.074 -16.242 -3.372 16.589 Atomic orbital electron populations 1.70775 1.06942 1.30687 1.46041 1.25848 0.96507 1.02737 0.93608 0.83540 0.74880 0.75320 0.76539 1.20794 1.21366 1.21431 1.21946 0.94113 0.91708 1.56477 0.93099 1.19901 0.95023 0.93347 0.96702 1.20272 0.94520 0.89462 0.93289 0.89789 1.59288 1.27713 1.46115 1.03539 1.19881 0.98733 0.97447 0.90876 1.19629 1.00670 0.92019 0.99159 1.18259 1.01829 0.92637 0.89230 1.41753 1.50315 1.18630 1.09306 0.74904 1.21751 0.99365 0.93571 0.93142 1.21603 1.08517 0.97580 0.95430 1.18823 1.03068 0.96462 0.91860 1.20280 1.01085 0.93616 0.98556 1.17192 1.02454 0.91111 0.83063 1.91493 1.92622 1.75244 1.52112 0.92067 0.96782 0.97450 0.86105 0.83617 0.85089 0.81448 0.83769 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 2 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 3 Si 1.07 25.20 29.90 -169.99 -5.08 20.12 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 7 C -0.60 -16.85 8.55 -34.44 -0.29 -17.14 16 8 H 0.05 1.38 7.14 -52.49 -0.37 1.00 16 9 C -0.01 -0.29 3.91 -27.88 -0.11 -0.40 16 10 C 0.14 2.92 2.69 -68.87 -0.19 2.74 16 11 H 0.08 1.92 7.93 -51.93 -0.41 1.51 16 12 N -0.84 -15.82 8.67 -5.66 -0.05 -15.87 16 13 C -0.07 -1.30 5.09 -104.52 -0.53 -1.83 16 14 C -0.09 -1.58 9.26 -39.45 -0.37 -1.95 16 15 C 0.09 1.32 7.27 -83.96 -0.61 0.71 16 16 N -0.60 -6.67 6.08 -10.64 -0.06 -6.74 16 17 H 0.41 3.34 8.96 -40.82 -0.37 2.97 16 18 C 0.05 0.47 11.81 -16.74 -0.20 0.28 16 19 C -0.21 -2.47 11.08 -37.67 -0.42 -2.89 16 20 C -0.10 -1.51 6.37 -105.14 -0.67 -2.18 16 21 C -0.12 -1.91 10.07 -39.21 -0.40 -2.31 16 22 C 0.08 1.58 7.22 -39.45 -0.28 1.30 16 23 F -0.14 -2.81 16.62 2.25 0.04 -2.78 16 24 H 0.27 8.36 7.22 -40.82 -0.29 8.06 16 25 H 0.01 0.39 8.01 -51.93 -0.42 -0.02 16 26 H 0.01 0.20 8.00 -51.93 -0.42 -0.22 16 27 H 0.33 5.77 7.25 -39.29 -0.29 5.48 16 28 H 0.35 6.79 7.90 -39.29 -0.31 6.47 16 29 H 0.13 2.01 6.20 -52.49 -0.33 1.68 16 30 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 277.83 15.07 4.19 4.19 Total: -1.00 -32.54 277.83 -7.64 -40.18 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -3.26 Total: 11.43 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -4.16 Total: -23.27 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.64 Total: -49.87 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.12 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.54 -7.64 -40.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074652.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.992 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds