Wall clock time and date at job start Mon Mar 30 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48491 * 109.47370 * 264.63572 * 3 2 1 5 5 H 1.48506 * 109.47147 * 24.64094 * 3 2 1 6 6 H 1.48497 * 109.46548 * 144.63570 * 3 2 1 7 7 C 1.37875 * 119.99855 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00234 * 4.62585 * 7 2 1 9 9 C 1.50705 * 119.99482 * 184.61851 * 7 2 1 10 10 H 1.08997 * 109.47157 * 354.79353 * 9 7 2 11 11 C 1.52997 * 109.46978 * 234.79033 * 9 7 2 12 12 N 1.46898 * 109.47354 * 65.51130 * 11 9 7 13 13 C 1.50702 * 109.46857 * 114.78855 * 9 7 2 14 14 C 1.34212 * 125.03550 * 85.18789 * 13 9 7 15 15 C 1.46531 * 106.99992 * 180.26987 * 14 13 9 16 16 C 1.39632 * 133.98690 * 179.75920 * 15 14 13 17 17 C 1.36606 * 119.79692 * 179.97438 * 16 15 14 18 18 C 1.39030 * 120.50603 * 0.02562 * 17 16 15 19 19 F 1.35095 * 119.69778 * 180.02562 * 18 17 16 20 20 C 1.37953 * 120.60987 * 359.97438 * 18 17 16 21 21 C 1.39122 * 119.75677 * 359.97438 * 20 18 17 22 22 N 1.36901 * 125.04204 * 265.00200 * 13 9 7 23 23 H 0.97003 * 125.06662 * 359.97438 * 22 13 9 24 24 H 0.97004 * 120.00401 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.46476 * 185.51070 * 11 9 7 26 26 H 1.09000 * 109.47490 * 305.50822 * 11 9 7 27 27 H 1.00897 * 111.00177 * 184.84963 * 12 11 9 28 28 H 1.00891 * 110.99734 * 308.80640 * 12 11 9 29 29 H 1.07999 * 126.49739 * 0.02562 * 14 13 9 30 30 H 1.08003 * 120.09861 * 359.95117 * 16 15 14 31 31 H 1.07997 * 119.74720 * 180.02562 * 17 16 15 32 32 H 1.07997 * 120.11654 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6099 1.9811 -1.3938 5 1 1.3944 2.6828 0.5838 6 1 3.4853 1.4756 0.8103 7 6 2.0046 -1.1941 -0.0005 8 1 1.4672 -2.1277 -0.0764 9 6 3.5079 -1.1961 0.1046 10 1 3.8754 -0.1703 0.0786 11 6 4.1001 -1.9798 -1.0685 12 7 3.8099 -1.2753 -2.3244 13 6 3.9199 -1.8445 1.4011 14 6 4.0754 -3.1646 1.5871 15 6 4.4727 -3.3565 2.9844 16 6 4.7700 -4.4769 3.7629 17 6 5.1182 -4.3192 5.0744 18 6 5.1784 -3.0510 5.6410 19 9 5.5251 -2.9139 6.9395 20 6 4.8885 -1.9312 4.8892 21 6 4.5329 -2.0707 3.5515 22 7 4.1945 -1.1742 2.5627 23 1 4.1533 -0.2115 2.6737 24 1 -0.4851 0.8400 0.0004 25 1 5.1792 -2.0650 -0.9406 26 1 3.6582 -2.9758 -1.1001 27 1 4.1212 -1.8118 -3.1202 28 1 2.8277 -1.0566 -2.3976 29 1 3.9308 -3.9388 0.8481 30 1 4.7244 -5.4651 3.3296 31 1 5.3483 -5.1862 5.6757 32 1 4.9383 -0.9499 5.3374 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074659.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:20 Heat of formation + Delta-G solvation = -18.209249 kcal Electronic energy + Delta-G solvation = -17389.844788 eV Core-core repulsion = 14456.770429 eV Total energy + Delta-G solvation = -2933.074359 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.82582 -42.18003 -38.17352 -36.51123 -34.29601 -32.85909 -31.50969 -30.36818 -28.38959 -26.08505 -24.00697 -22.73125 -22.39998 -20.64378 -19.31327 -18.94707 -17.80372 -17.05277 -16.57617 -16.43081 -16.31566 -16.01339 -15.41149 -15.20996 -14.75642 -14.67825 -14.33095 -14.05998 -13.92209 -13.36920 -13.22427 -12.88576 -12.57736 -12.32212 -11.94437 -11.89304 -11.54070 -11.37284 -10.76632 -10.55792 -9.39135 -9.09511 -8.53572 -8.33888 -6.39332 0.07095 0.54718 1.29321 1.39794 1.42553 1.85934 2.15730 2.29617 2.82547 3.04122 3.43370 3.74429 3.87498 4.07620 4.17485 4.27970 4.40335 4.48232 4.53414 4.83743 4.93388 4.97352 5.00010 5.13082 5.20370 5.22437 5.47998 5.55474 5.85211 5.97655 6.16624 6.28126 6.42306 6.60844 6.70164 6.87708 7.26510 8.81410 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.006463 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.377120 B = 4331.207381 C = 4817.054132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.259 1.259 5 H -0.297 1.297 6 H -0.252 1.252 7 C -0.498 4.498 8 H 0.037 0.963 9 C 0.059 3.941 10 H 0.053 0.947 11 C 0.090 3.910 12 N -0.853 5.853 13 C 0.122 3.878 14 C -0.230 4.230 15 C -0.127 4.127 16 C -0.046 4.046 17 C -0.177 4.177 18 C 0.096 3.904 19 F -0.144 7.144 20 C -0.172 4.172 21 C 0.095 3.905 22 N -0.592 5.592 23 H 0.415 0.585 24 H 0.267 0.733 25 H 0.067 0.933 26 H 0.023 0.977 27 H 0.345 0.655 28 H 0.344 0.656 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.160 0.840 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.377 -5.089 5.376 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.183 1.183 5 H -0.223 1.223 6 H -0.177 1.177 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.039 3.961 10 H 0.071 0.929 11 C -0.041 4.041 12 N -0.384 5.384 13 C 0.012 3.988 14 C -0.254 4.254 15 C -0.132 4.132 16 C -0.064 4.064 17 C -0.197 4.197 18 C 0.076 3.924 19 F -0.123 7.123 20 C -0.194 4.194 21 C -0.013 4.013 22 N -0.194 5.194 23 H 0.253 0.747 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.041 0.959 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.177 0.823 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.699 -4.284 5.671 13.689 hybrid contribution -0.964 0.646 0.086 1.163 sum 10.736 -3.638 5.758 12.714 Atomic orbital electron populations 1.70036 1.08152 1.28149 1.51289 1.25838 0.95220 1.02350 0.93751 0.85889 0.78523 0.79121 0.80076 1.18344 1.22347 1.17694 1.20860 0.89758 0.93095 1.49898 0.94510 1.18095 0.94638 0.96337 0.87037 0.92861 1.21564 0.98388 0.94494 0.89681 1.58734 1.25264 1.50451 1.03948 1.21236 0.96111 0.92703 0.88726 1.21437 1.14031 0.94733 0.95200 1.19613 1.05853 0.92982 0.94802 1.20378 0.95729 0.98080 0.92244 1.20800 1.06528 0.96035 0.96294 1.17242 1.02632 0.94202 0.78300 1.91453 1.89968 1.96815 1.34071 1.19904 1.08666 0.99540 0.91292 1.18061 1.02776 0.90057 0.90383 1.41905 1.60140 1.08849 1.08516 0.74744 0.92408 0.91457 0.95877 0.84255 0.84268 0.83307 0.82605 0.82256 0.84145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.89 13.96 21.45 0.30 -54.59 16 2 C 0.03 1.47 5.47 84.65 0.46 1.93 16 3 Si 0.94 41.40 27.23 68.60 1.87 43.27 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 5 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.25 -10.12 6.40 99.48 0.64 -9.49 16 7 C -0.50 -25.63 7.82 25.60 0.20 -25.43 16 8 H 0.04 2.15 8.06 -2.91 -0.02 2.13 16 9 C 0.06 2.49 2.40 -12.28 -0.03 2.46 16 10 H 0.05 2.28 4.52 -2.39 -0.01 2.27 16 11 C 0.09 3.27 5.67 86.30 0.49 3.76 16 12 N -0.85 -29.62 9.66 -186.72 -1.80 -31.42 16 13 C 0.12 4.85 6.02 40.85 0.25 5.10 16 14 C -0.23 -8.54 10.19 23.51 0.24 -8.31 16 15 C -0.13 -4.36 6.37 -20.19 -0.13 -4.49 16 16 C -0.05 -1.25 10.05 22.22 0.22 -1.02 16 17 C -0.18 -4.42 9.95 22.08 0.22 -4.20 16 18 C 0.10 2.72 7.28 22.39 0.16 2.88 16 19 F -0.14 -3.94 17.25 44.97 0.78 -3.17 16 20 C -0.17 -5.22 10.05 22.41 0.23 -4.99 16 21 C 0.10 3.31 7.27 39.03 0.28 3.59 16 22 N -0.59 -21.84 6.07 -175.89 -1.07 -22.91 16 23 H 0.42 14.04 8.96 -92.71 -0.83 13.21 16 24 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 25 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 26 H 0.02 0.83 7.47 -2.39 -0.02 0.82 16 27 H 0.34 9.57 9.08 -89.70 -0.81 8.76 16 28 H 0.34 13.44 7.98 -89.70 -0.72 12.73 16 29 H 0.15 5.08 7.42 -2.91 -0.02 5.06 16 30 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -60.43 277.44 1.42 -59.01 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -1.24 Total: 38.51 kcal Atomic # 6 Polarization: -31.30 SS G_CDS: 2.60 Total: -28.71 kcal Atomic # 7 Polarization: -106.34 SS G_CDS: -2.57 Total: -108.91 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.78 Total: -3.17 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.87 Total: 43.27 kcal Total: -60.43 1.42 -59.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074659.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.799 kcal (2) G-P(sol) polarization free energy of solvation -60.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds