Wall clock time and date at job start Mon Mar 30 2020 06:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36811 * 125.07335 * 2 1 4 4 C 1.34244 * 109.93301 * 179.97438 * 3 2 1 5 5 C 1.46487 * 107.01001 * 359.97438 * 4 3 2 6 6 C 1.39670 * 133.96673 * 179.97438 * 5 4 3 7 7 C 1.37792 * 119.62587 * 180.02562 * 6 5 4 8 8 F 1.35099 * 119.83248 * 180.02562 * 7 6 5 9 9 C 1.39040 * 120.33180 * 359.97438 * 7 6 5 10 10 C 1.50701 * 119.67396 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47005 * 39.99963 * 10 9 7 12 12 N 1.46899 * 109.46893 * 159.99705 * 10 9 7 13 13 C 1.50696 * 109.46947 * 279.99919 * 10 9 7 14 14 H 1.07997 * 120.00178 * 356.22796 * 13 10 9 15 15 C 1.37881 * 120.00291 * 176.22762 * 13 10 9 16 16 N 1.31518 * 119.99566 * 353.16286 * 15 13 10 17 17 Si 1.86790 * 120.00260 * 173.16364 * 15 13 10 18 18 H 1.48495 * 109.47233 * 265.18810 * 17 15 13 19 19 H 1.48498 * 109.47494 * 25.19342 * 17 15 13 20 20 H 1.48506 * 109.47136 * 145.18964 * 17 15 13 21 21 C 1.37702 * 120.64990 * 0.29159 * 9 7 6 22 22 C 1.37824 * 125.06556 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46971 * 90.02848 * 1 2 3 24 24 H 1.08994 * 109.47811 * 210.03248 * 1 2 3 25 25 H 1.09005 * 109.46840 * 330.03255 * 1 2 3 26 26 H 1.08003 * 125.03372 * 359.97438 * 3 2 1 27 27 H 1.07999 * 126.49467 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.18928 * 0.02883 * 6 5 4 29 29 H 1.00904 * 110.99750 * 66.80868 * 12 10 9 30 30 H 1.00901 * 110.99663 * 190.75657 * 12 10 9 31 31 H 0.96998 * 119.99910 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.02890 * 179.70590 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 0.0006 5 6 3.5947 -0.6950 0.0016 6 6 4.6311 -1.6314 0.0020 7 6 4.3335 -2.9768 0.0025 8 9 5.3327 -3.8861 0.0035 9 6 3.0101 -3.4032 0.0031 10 6 2.7016 -4.8783 0.0042 11 1 3.3979 -5.3946 0.6650 12 7 1.3276 -5.0908 0.4783 13 6 2.8400 -5.4214 -1.3947 14 1 3.0632 -4.7537 -2.2136 15 6 2.6816 -6.7709 -1.6292 16 7 2.5439 -7.6020 -0.6192 17 14 2.6628 -7.4186 -3.3811 18 1 1.2591 -7.5287 -3.8530 19 1 3.4095 -6.4852 -4.2621 20 1 3.3048 -8.7571 -3.4209 21 6 1.9786 -2.4910 -0.0029 22 6 2.2568 -1.1281 0.0005 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8896 0.5143 25 1 -0.3633 0.8903 0.5134 26 1 1.8836 2.1353 -0.0004 27 1 4.3937 1.4394 0.0011 28 1 5.6598 -1.3028 0.0021 29 1 0.6572 -4.7168 -0.1766 30 1 1.1534 -6.0687 0.6554 31 1 2.4328 -8.5514 -0.7841 32 1 0.9543 -2.8334 -0.0072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261074887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:37 Heat of formation + Delta-G solvation = 14.570499 kcal Electronic energy + Delta-G solvation = -17685.192709 eV Core-core repulsion = 14753.539787 eV Total energy + Delta-G solvation = -2931.652922 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -47.85735 -40.83232 -36.87292 -34.32590 -32.45520 -31.15527 -29.40015 -28.24816 -25.92995 -25.75624 -23.09837 -21.53443 -20.19616 -19.47479 -17.05091 -16.60583 -16.44412 -15.52818 -15.11877 -14.86264 -14.47654 -14.36936 -13.65086 -13.50784 -12.87668 -12.77490 -12.53482 -12.42210 -12.25764 -12.09064 -11.75494 -11.28711 -11.01143 -10.84032 -10.38250 -10.30051 -9.92348 -9.57773 -9.14612 -8.60673 -7.52394 -7.23638 -7.14385 -6.10403 -4.22912 1.59807 2.09886 3.04733 3.09176 3.23147 3.31240 3.36438 4.29391 4.44353 4.84378 4.92146 5.07886 5.13797 5.25812 5.32950 5.48432 5.59107 5.74663 5.90870 5.98819 6.17317 6.42583 6.53452 6.60714 6.93221 7.06379 7.14765 7.25346 7.56728 7.60665 7.75647 7.79634 8.07290 8.66078 8.82710 8.98879 9.45480 10.90499 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.006873 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.951047 B = 4073.138995 C = 4475.726391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.491 5.491 3 C 0.040 3.960 4 C -0.205 4.205 5 C -0.106 4.106 6 C -0.125 4.125 7 C 0.084 3.916 8 F -0.137 7.137 9 C -0.040 4.040 10 C 0.243 3.757 11 H 0.059 0.941 12 N -0.847 5.847 13 C -0.540 4.540 14 H 0.056 0.944 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.273 1.273 20 H -0.285 1.285 21 C -0.099 4.099 22 C 0.087 3.913 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.162 0.838 27 H 0.141 0.859 28 H 0.125 0.875 29 H 0.314 0.686 30 H 0.348 0.652 31 H 0.265 0.735 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.188 14.427 1.358 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.176 5.176 3 C -0.085 4.085 4 C -0.231 4.231 5 C -0.111 4.111 6 C -0.145 4.145 7 C 0.063 3.937 8 F -0.115 7.115 9 C -0.043 4.043 10 C 0.133 3.867 11 H 0.076 0.924 12 N -0.375 5.375 13 C -0.580 4.580 14 H 0.074 0.926 15 C -0.135 4.135 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.198 1.198 20 H -0.211 1.211 21 C -0.119 4.119 22 C -0.018 4.018 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.179 0.821 27 H 0.159 0.841 28 H 0.143 0.857 29 H 0.124 0.876 30 H 0.162 0.838 31 H 0.075 0.925 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.311 14.671 2.046 15.178 hybrid contribution 0.048 -1.111 -1.920 2.218 sum -3.263 13.560 0.127 13.948 Atomic orbital electron populations 1.21871 0.77676 1.03893 1.02655 1.43729 1.05532 1.04319 1.63972 1.21626 0.90534 0.90805 1.05559 1.21523 0.95711 0.92689 1.13188 1.18734 0.91616 0.93096 1.07625 1.20220 0.98698 0.90365 1.05178 1.17264 0.84990 0.85659 1.05774 1.91463 1.59447 1.66581 1.94028 1.20221 0.90053 0.98668 0.95377 1.17874 0.89008 0.84722 0.95130 0.92374 1.59510 1.04692 1.23640 1.49657 1.21700 1.49671 0.92963 0.93668 0.92552 1.24996 0.94467 0.96637 0.97358 1.69878 1.49308 1.03487 1.30203 0.86512 0.78111 0.78348 0.84689 1.20668 1.19754 1.21055 1.19640 0.99944 0.87416 1.04933 1.18358 0.89832 0.88323 1.05242 0.91678 0.89941 0.90477 0.82096 0.84126 0.85691 0.87638 0.83793 0.92544 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 11.03 59.84 0.66 1.49 16 2 N -0.49 -7.04 3.18 -121.79 -0.39 -7.42 16 3 C 0.04 0.50 11.29 -16.74 -0.19 0.31 16 4 C -0.21 -2.95 11.08 -37.67 -0.42 -3.37 16 5 C -0.11 -1.92 6.37 -105.14 -0.67 -2.59 16 6 C -0.12 -2.38 10.07 -39.21 -0.40 -2.77 16 7 C 0.08 1.85 7.22 -39.45 -0.28 1.56 16 8 F -0.14 -3.20 16.63 2.25 0.04 -3.16 16 9 C -0.04 -0.92 5.03 -104.52 -0.53 -1.45 16 10 C 0.24 6.18 2.51 -70.02 -0.18 6.00 16 11 H 0.06 1.67 7.92 -51.93 -0.41 1.26 16 12 N -0.85 -19.67 8.46 -6.65 -0.06 -19.72 16 13 C -0.54 -14.85 8.60 -34.44 -0.30 -15.14 16 14 H 0.06 1.59 7.75 -52.49 -0.41 1.18 16 15 C 0.07 1.87 5.36 -17.82 -0.10 1.77 16 16 N -0.89 -24.89 12.16 55.43 0.67 -24.21 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C -0.10 -1.97 9.16 -39.46 -0.36 -2.34 16 22 C 0.09 1.58 6.81 -83.95 -0.57 1.01 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 27 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.31 6.85 7.59 -39.29 -0.30 6.55 16 30 H 0.35 8.57 7.84 -39.29 -0.31 8.27 16 31 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.13 2.42 6.38 -52.49 -0.33 2.09 16 LS Contribution 280.17 15.07 4.22 4.22 Total: -1.00 -30.27 280.17 -7.28 -37.56 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -3.43 Total: 12.00 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -3.32 Total: -15.52 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 0.23 Total: -51.36 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.27 -7.28 -37.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.126 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds