Wall clock time and date at job start Mon Mar 30 2020 06:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36811 * 125.07335 * 2 1 4 4 C 1.34244 * 109.93301 * 179.97438 * 3 2 1 5 5 C 1.46487 * 107.01001 * 359.97438 * 4 3 2 6 6 C 1.39670 * 133.96673 * 179.97438 * 5 4 3 7 7 C 1.37792 * 119.62587 * 180.02562 * 6 5 4 8 8 F 1.35099 * 119.83248 * 180.02562 * 7 6 5 9 9 C 1.39040 * 120.33180 * 359.97438 * 7 6 5 10 10 C 1.50701 * 119.67396 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.47005 * 39.99963 * 10 9 7 12 12 N 1.46899 * 109.46893 * 159.99705 * 10 9 7 13 13 C 1.50696 * 109.46947 * 279.99919 * 10 9 7 14 14 H 1.07997 * 120.00178 * 356.22796 * 13 10 9 15 15 C 1.37881 * 120.00291 * 176.22762 * 13 10 9 16 16 N 1.31518 * 119.99566 * 353.16286 * 15 13 10 17 17 Si 1.86790 * 120.00260 * 173.16364 * 15 13 10 18 18 H 1.48495 * 109.47233 * 265.18810 * 17 15 13 19 19 H 1.48498 * 109.47494 * 25.19342 * 17 15 13 20 20 H 1.48506 * 109.47136 * 145.18964 * 17 15 13 21 21 C 1.37702 * 120.64990 * 0.29159 * 9 7 6 22 22 C 1.37824 * 125.06556 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46971 * 90.02848 * 1 2 3 24 24 H 1.08994 * 109.47811 * 210.03248 * 1 2 3 25 25 H 1.09005 * 109.46840 * 330.03255 * 1 2 3 26 26 H 1.08003 * 125.03372 * 359.97438 * 3 2 1 27 27 H 1.07999 * 126.49467 * 180.02562 * 4 3 2 28 28 H 1.07994 * 120.18928 * 0.02883 * 6 5 4 29 29 H 1.00904 * 110.99750 * 66.80868 * 12 10 9 30 30 H 1.00901 * 110.99663 * 190.75657 * 12 10 9 31 31 H 0.96998 * 119.99910 * 180.02562 * 16 15 13 32 32 H 1.08002 * 120.02890 * 179.70590 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2511 1.1197 0.0000 4 6 3.5469 0.7691 0.0006 5 6 3.5947 -0.6950 0.0016 6 6 4.6311 -1.6314 0.0020 7 6 4.3335 -2.9768 0.0025 8 9 5.3327 -3.8861 0.0035 9 6 3.0101 -3.4032 0.0031 10 6 2.7016 -4.8783 0.0042 11 1 3.3979 -5.3946 0.6650 12 7 1.3276 -5.0908 0.4783 13 6 2.8400 -5.4214 -1.3947 14 1 3.0632 -4.7537 -2.2136 15 6 2.6816 -6.7709 -1.6292 16 7 2.5439 -7.6020 -0.6192 17 14 2.6628 -7.4186 -3.3811 18 1 1.2591 -7.5287 -3.8530 19 1 3.4095 -6.4852 -4.2621 20 1 3.3048 -8.7571 -3.4209 21 6 1.9786 -2.4910 -0.0029 22 6 2.2568 -1.1281 0.0005 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8896 0.5143 25 1 -0.3633 0.8903 0.5134 26 1 1.8836 2.1353 -0.0004 27 1 4.3937 1.4394 0.0011 28 1 5.6598 -1.3028 0.0021 29 1 0.6572 -4.7168 -0.1766 30 1 1.1534 -6.0687 0.6554 31 1 2.4328 -8.5514 -0.7841 32 1 0.9543 -2.8334 -0.0072 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261074887.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:36 Heat of formation + Delta-G solvation = -4.638688 kcal Electronic energy + Delta-G solvation = -17686.025682 eV Core-core repulsion = 14753.539787 eV Total energy + Delta-G solvation = -2932.485895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.58230 -42.08122 -38.45252 -36.07413 -33.95639 -32.85527 -30.79180 -29.79586 -27.80815 -26.89411 -24.77985 -23.04066 -21.66497 -20.81749 -18.68399 -18.40161 -17.96551 -17.10720 -16.54478 -16.44272 -16.12671 -15.92517 -15.30394 -14.83677 -14.68029 -14.30332 -13.93883 -13.55240 -13.50731 -13.43738 -13.19720 -13.02332 -12.91515 -12.77023 -12.11919 -11.95093 -11.57021 -11.40896 -10.74326 -10.45970 -9.35215 -8.88186 -8.45300 -8.15573 -6.39982 0.18558 0.57221 1.33828 1.36063 1.47049 1.89654 2.01852 2.34772 2.88145 3.01473 3.52445 3.80838 3.99568 4.05957 4.15213 4.28782 4.53068 4.63218 4.68774 4.72253 4.79940 4.92428 5.05694 5.15586 5.30356 5.38445 5.60297 5.76350 5.82694 5.89166 6.01310 6.32746 6.54391 6.62579 6.76309 7.02499 7.32466 8.80401 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.027554 B = 0.006873 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.951047 B = 4073.138995 C = 4475.726391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.489 5.489 3 C 0.067 3.933 4 C -0.224 4.224 5 C -0.119 4.119 6 C -0.118 4.118 7 C 0.045 3.955 8 F -0.157 7.157 9 C -0.078 4.078 10 C 0.252 3.748 11 H 0.010 0.990 12 N -0.833 5.833 13 C -0.556 4.556 14 H 0.041 0.959 15 C 0.025 3.975 16 N -0.914 5.914 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.280 1.280 21 C -0.094 4.094 22 C 0.072 3.928 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.216 0.784 27 H 0.169 0.831 28 H 0.147 0.853 29 H 0.323 0.677 30 H 0.339 0.661 31 H 0.268 0.732 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 17.655 0.617 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.173 5.173 3 C -0.058 4.058 4 C -0.248 4.248 5 C -0.124 4.124 6 C -0.137 4.137 7 C 0.025 3.975 8 F -0.136 7.136 9 C -0.081 4.081 10 C 0.141 3.859 11 H 0.028 0.972 12 N -0.359 5.359 13 C -0.596 4.596 14 H 0.060 0.940 15 C -0.176 4.176 16 N -0.553 5.553 17 Si 0.784 3.216 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.206 1.206 21 C -0.115 4.115 22 C -0.035 4.035 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.233 0.767 27 H 0.186 0.814 28 H 0.165 0.835 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.721 17.924 1.309 18.582 hybrid contribution 0.406 -1.904 -1.648 2.550 sum -4.315 16.021 -0.339 16.595 Atomic orbital electron populations 1.22217 0.75097 1.05592 1.04011 1.44125 1.07214 1.03452 1.62472 1.22516 0.89701 0.92226 1.01322 1.21904 0.97822 0.90655 1.14435 1.19257 0.91254 0.95264 1.06611 1.20439 1.00372 0.89184 1.03719 1.17590 0.84536 0.86733 1.08688 1.91391 1.60101 1.67557 1.94544 1.20010 0.91378 0.97463 0.99214 1.17527 0.88692 0.86554 0.93089 0.97175 1.59451 1.04062 1.22821 1.49597 1.21872 1.50096 0.93310 0.94307 0.94020 1.25734 0.94003 0.96722 1.01146 1.69978 1.49614 1.03755 1.31947 0.85539 0.78597 0.77503 0.79975 1.19244 1.20151 1.20567 1.19591 0.99252 0.88395 1.04218 1.18370 0.91086 0.88627 1.05391 0.90458 0.90585 0.86594 0.76713 0.81394 0.83522 0.86635 0.84865 0.92268 0.84920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 11.03 127.77 1.41 2.56 16 2 N -0.49 -12.12 3.18 -539.24 -1.72 -13.83 16 3 C 0.07 1.33 11.29 83.00 0.94 2.27 16 4 C -0.22 -5.52 11.08 23.51 0.26 -5.26 16 5 C -0.12 -4.11 6.37 -20.20 -0.13 -4.23 16 6 C -0.12 -4.51 10.07 22.51 0.23 -4.28 16 7 C 0.04 2.09 7.22 22.36 0.16 2.25 16 8 F -0.16 -7.91 16.63 44.97 0.75 -7.16 16 9 C -0.08 -3.74 5.03 -19.80 -0.10 -3.84 16 10 C 0.25 13.60 2.51 43.42 0.11 13.71 16 11 H 0.01 0.64 7.92 -2.39 -0.02 0.62 16 12 N -0.83 -40.28 8.46 -174.96 -1.48 -41.76 16 13 C -0.56 -31.92 8.60 25.60 0.22 -31.70 16 14 H 0.04 2.45 7.75 -2.91 -0.02 2.43 16 15 C 0.02 1.38 5.36 84.66 0.45 1.84 16 16 N -0.91 -52.65 12.16 21.45 0.26 -52.39 16 17 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 C -0.09 -3.81 9.16 22.35 0.20 -3.61 16 22 C 0.07 2.49 6.81 38.99 0.27 2.76 16 23 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 25 H 0.12 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.22 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 28 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16 29 H 0.32 14.48 7.59 -89.69 -0.68 13.80 16 30 H 0.34 17.40 7.84 -89.69 -0.70 16.70 16 31 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.13 5.06 6.38 -2.91 -0.02 5.04 16 Total: -1.00 -69.53 280.17 3.64 -65.89 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.22 Total: 30.36 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 4.02 Total: -27.54 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -2.93 Total: -107.98 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.75 Total: -7.16 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -69.53 3.64 -65.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261074887.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.254 kcal (2) G-P(sol) polarization free energy of solvation -69.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds