Wall clock time and date at job start Mon Mar 30 2020 05:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37764 * 119.45488 * 2 1 4 4 C 1.38311 * 120.08358 * 180.44435 * 3 2 1 5 5 C 1.37823 * 119.41230 * 358.51645 * 4 3 2 6 6 C 1.39533 * 120.50975 * 359.79610 * 5 4 3 7 7 C 1.38021 * 120.24477 * 3.00302 * 6 5 4 8 8 C 1.51319 * 126.12546 * 175.39475 * 7 6 5 9 9 C 1.52787 * 112.58607 * 31.09655 * 8 7 6 10 10 H 1.08999 * 109.59625 * 23.32576 * 9 8 7 11 11 C 1.50697 * 109.59791 * 143.64556 * 9 8 7 12 12 H 1.07991 * 120.00449 * 359.40741 * 11 9 8 13 13 C 1.37885 * 119.99686 * 179.68573 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.53288 * 108.82625 * 263.48565 * 9 8 7 20 20 C 1.51115 * 111.22924 * 63.51657 * 19 9 8 21 21 S 1.76202 * 117.88254 * 185.84247 * 6 5 4 22 22 H 1.09006 * 109.46602 * 269.97279 * 1 2 3 23 23 H 1.08996 * 109.47444 * 29.97019 * 1 2 3 24 24 H 1.09001 * 109.47420 * 149.97838 * 1 2 3 25 25 H 1.08005 * 119.95941 * 0.47030 * 3 2 1 26 26 H 1.07994 * 120.29492 * 178.49647 * 4 3 2 27 27 H 1.07994 * 119.74598 * 179.77859 * 5 4 3 28 28 H 1.09003 * 108.85915 * 270.29223 * 8 7 6 29 29 H 1.09003 * 108.77774 * 151.84547 * 8 7 6 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.12815 * 184.13005 * 19 9 8 32 32 H 1.09002 * 109.13080 * 303.24046 * 19 9 8 33 33 H 1.08998 * 110.00135 * 274.23902 * 20 19 9 34 34 H 1.08997 * 109.83352 * 153.22472 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.1996 0.0000 4 6 3.5674 1.2148 -0.0093 5 6 4.2576 0.0220 0.0126 6 6 3.5718 -1.1927 0.0481 7 6 2.1926 -1.2141 -0.0007 8 6 1.3214 -2.4494 -0.0691 9 6 1.9449 -3.6475 0.6451 10 1 2.6585 -3.2976 1.3911 11 6 0.8640 -4.4534 1.3182 12 1 -0.1663 -4.1365 1.2521 13 6 1.1910 -5.5922 2.0234 14 7 2.4457 -5.9782 2.1039 15 14 -0.1480 -6.5869 2.8641 16 1 -1.1235 -7.0608 1.8498 17 1 0.4603 -7.7551 3.5504 18 1 -0.8449 -5.7354 3.8614 19 6 2.6674 -4.5186 -0.3887 20 6 3.8138 -3.7707 -1.0291 21 16 4.5175 -2.6678 0.2329 22 1 -0.3633 -0.0005 1.0278 23 1 -0.3634 0.8902 -0.5133 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6349 2.1293 0.0077 26 1 4.1018 2.1529 -0.0338 27 1 5.3374 0.0275 0.0019 28 1 1.1588 -2.7083 -1.1154 29 1 0.3591 -2.2261 0.3916 30 1 2.6757 -6.7796 2.5996 31 1 3.0513 -5.4124 0.1031 32 1 1.9601 -4.8143 -1.1636 33 1 3.4510 -3.1837 -1.8728 34 1 4.5722 -4.4763 -1.3682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261076256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:00 Heat of formation + Delta-G solvation = 13.543076 kcal Electronic energy + Delta-G solvation = -16089.890577 eV Core-core repulsion = 13692.113528 eV Total energy + Delta-G solvation = -2397.777050 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.19049 -35.79126 -32.78865 -32.00008 -30.84741 -28.44811 -26.61486 -25.13094 -22.98962 -21.95717 -20.45430 -19.06110 -16.88601 -16.19032 -15.30172 -15.12894 -14.48068 -14.36951 -13.89697 -13.41763 -13.01170 -12.83657 -12.47741 -12.35407 -12.01767 -11.71266 -11.60686 -11.16705 -11.02688 -10.76942 -10.67040 -10.35792 -10.09134 -9.74784 -9.39086 -9.24050 -8.89783 -8.50553 -8.31187 -8.08213 -6.52528 -5.94564 -4.00262 1.54511 1.73439 2.39568 3.24837 3.32940 3.38040 3.40090 4.07950 4.45276 5.15804 5.20610 5.32991 5.37709 5.59295 5.62409 5.73197 5.86653 5.91396 5.94842 6.04220 6.26064 6.30413 6.41223 6.42994 6.48451 6.72168 6.79852 6.91402 6.99302 7.10545 7.33002 7.40603 7.75490 8.07923 8.13961 8.46684 9.02066 9.62223 11.10601 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.008186 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.376894 B = 3419.457317 C = 4127.738619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.086 4.086 7 C -0.041 4.041 8 C -0.086 4.086 9 C 0.039 3.961 10 H 0.064 0.936 11 C -0.511 4.511 12 H 0.053 0.947 13 C 0.063 3.937 14 N -0.883 5.883 15 Si 0.888 3.112 16 H -0.279 1.279 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.119 4.119 20 C -0.091 4.091 21 S -0.135 6.135 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.074 0.926 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.260 0.740 31 H 0.102 0.898 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.094 10.144 -5.709 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.150 4.150 5 C -0.121 4.121 6 C -0.199 4.199 7 C -0.045 4.045 8 C -0.123 4.123 9 C 0.019 3.981 10 H 0.082 0.918 11 C -0.550 4.550 12 H 0.071 0.929 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.204 1.204 19 C -0.158 4.158 20 C -0.239 4.239 21 S 0.106 5.894 22 H 0.089 0.911 23 H 0.077 0.923 24 H 0.093 0.907 25 H 0.134 0.866 26 H 0.137 0.863 27 H 0.141 0.859 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.138 9.642 -4.910 11.029 hybrid contribution -1.721 -0.254 -0.387 1.782 sum 0.417 9.388 -5.296 10.787 Atomic orbital electron populations 1.20908 0.91566 1.02430 1.02460 1.20155 0.96062 0.92649 1.00750 1.20856 0.94349 0.97078 1.01726 1.20901 0.94237 0.97306 1.02508 1.21150 0.99500 0.91101 1.00350 1.21420 0.95148 0.97189 1.06113 1.20500 0.92264 0.95972 0.95810 1.21198 0.98053 0.92664 1.00378 1.19059 0.95886 0.89324 0.93787 0.91820 1.21152 0.93056 1.08937 1.31820 0.92885 1.24947 0.95204 0.97477 0.96230 1.69874 1.16258 1.24473 1.41497 0.86736 0.82189 0.79712 0.79797 1.20432 1.21322 1.20367 1.21676 0.94150 1.02259 0.97742 1.23577 1.02846 0.99670 0.97769 1.85147 1.45585 1.06937 1.51731 0.91113 0.92283 0.90749 0.86619 0.86256 0.85942 0.92554 0.90599 0.93019 0.88003 0.94313 0.91262 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.98 36.00 0.32 -1.33 16 2 C -0.09 -1.57 5.88 -104.35 -0.61 -2.19 16 3 C -0.12 -1.76 9.64 -39.73 -0.38 -2.15 16 4 C -0.13 -1.87 10.07 -39.71 -0.40 -2.27 16 5 C -0.10 -1.61 9.66 -39.25 -0.38 -1.99 16 6 C -0.09 -1.66 5.70 -39.18 -0.22 -1.88 16 7 C -0.04 -0.79 5.63 -103.96 -0.59 -1.38 16 8 C -0.09 -1.79 3.97 -27.69 -0.11 -1.90 16 9 C 0.04 0.94 1.76 -91.73 -0.16 0.78 16 10 H 0.06 1.73 5.82 -43.55 -0.25 1.47 16 11 C -0.51 -13.78 8.47 -34.44 -0.29 -14.08 16 12 H 0.05 1.40 7.44 -52.49 -0.39 1.01 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 14 N -0.88 -24.89 11.31 55.43 0.63 -24.26 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.12 -2.73 4.66 -27.53 -0.13 -2.86 16 20 C -0.09 -1.77 6.14 36.21 0.22 -1.55 16 21 S -0.13 -2.72 19.41 -107.50 -2.09 -4.81 16 22 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 24 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 25 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 26 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 27 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.06 1.13 7.60 -51.93 -0.39 0.73 16 29 H 0.08 1.56 5.27 -51.93 -0.27 1.29 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.10 2.63 5.98 -51.93 -0.31 2.32 16 32 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 33 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 278.65 15.07 4.20 4.20 Total: -1.00 -28.33 278.65 -9.55 -37.88 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.45 Total: 2.07 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -2.82 Total: -31.15 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.63 Total: -24.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -2.72 SS G_CDS: -2.09 Total: -4.81 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.33 -9.55 -37.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.423 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds