Wall clock time and date at job start Mon Mar 30 2020 05:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37764 * 119.45488 * 2 1 4 4 C 1.38311 * 120.08358 * 180.44435 * 3 2 1 5 5 C 1.37823 * 119.41230 * 358.51645 * 4 3 2 6 6 C 1.39533 * 120.50975 * 359.79610 * 5 4 3 7 7 C 1.38021 * 120.24477 * 3.00302 * 6 5 4 8 8 C 1.51319 * 126.12546 * 175.39475 * 7 6 5 9 9 C 1.52787 * 112.58607 * 31.09655 * 8 7 6 10 10 H 1.08999 * 109.59625 * 23.32576 * 9 8 7 11 11 C 1.50697 * 109.59791 * 143.64556 * 9 8 7 12 12 H 1.07991 * 120.00449 * 359.40741 * 11 9 8 13 13 C 1.37885 * 119.99686 * 179.68573 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 9 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 C 1.53288 * 108.82625 * 263.48565 * 9 8 7 20 20 C 1.51115 * 111.22924 * 63.51657 * 19 9 8 21 21 S 1.76202 * 117.88254 * 185.84247 * 6 5 4 22 22 H 1.09006 * 109.46602 * 269.97279 * 1 2 3 23 23 H 1.08996 * 109.47444 * 29.97019 * 1 2 3 24 24 H 1.09001 * 109.47420 * 149.97838 * 1 2 3 25 25 H 1.08005 * 119.95941 * 0.47030 * 3 2 1 26 26 H 1.07994 * 120.29492 * 178.49647 * 4 3 2 27 27 H 1.07994 * 119.74598 * 179.77859 * 5 4 3 28 28 H 1.09003 * 108.85915 * 270.29223 * 8 7 6 29 29 H 1.09003 * 108.77774 * 151.84547 * 8 7 6 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.08996 * 109.12815 * 184.13005 * 19 9 8 32 32 H 1.09002 * 109.13080 * 303.24046 * 19 9 8 33 33 H 1.08998 * 110.00135 * 274.23902 * 20 19 9 34 34 H 1.08997 * 109.83352 * 153.22472 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1844 1.1996 0.0000 4 6 3.5674 1.2148 -0.0093 5 6 4.2576 0.0220 0.0126 6 6 3.5718 -1.1927 0.0481 7 6 2.1926 -1.2141 -0.0007 8 6 1.3214 -2.4494 -0.0691 9 6 1.9449 -3.6475 0.6451 10 1 2.6585 -3.2976 1.3911 11 6 0.8640 -4.4534 1.3182 12 1 -0.1663 -4.1365 1.2521 13 6 1.1910 -5.5922 2.0234 14 7 2.4457 -5.9782 2.1039 15 14 -0.1480 -6.5869 2.8641 16 1 -1.1235 -7.0608 1.8498 17 1 0.4603 -7.7551 3.5504 18 1 -0.8449 -5.7354 3.8614 19 6 2.6674 -4.5186 -0.3887 20 6 3.8138 -3.7707 -1.0291 21 16 4.5175 -2.6678 0.2329 22 1 -0.3633 -0.0005 1.0278 23 1 -0.3634 0.8902 -0.5133 24 1 -0.3634 -0.8898 -0.5142 25 1 1.6349 2.1293 0.0077 26 1 4.1018 2.1529 -0.0338 27 1 5.3374 0.0275 0.0019 28 1 1.1588 -2.7083 -1.1154 29 1 0.3591 -2.2261 0.3916 30 1 2.6757 -6.7796 2.5996 31 1 3.0513 -5.4124 0.1031 32 1 1.9601 -4.8143 -1.1636 33 1 3.4510 -3.1837 -1.8728 34 1 4.5722 -4.4763 -1.3682 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261076256.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:38:59 Heat of formation + Delta-G solvation = 0.121545 kcal Electronic energy + Delta-G solvation = -16090.472579 eV Core-core repulsion = 13692.113528 eV Total energy + Delta-G solvation = -2398.359051 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50444 -37.52600 -34.26646 -33.73011 -32.30081 -30.13612 -27.86301 -26.83803 -24.76872 -23.36343 -21.77060 -20.81799 -18.64428 -17.75163 -16.77526 -16.62810 -16.28907 -15.90419 -15.32282 -14.96122 -14.50488 -14.25111 -13.93937 -13.75375 -13.51032 -13.20123 -13.05350 -12.86463 -12.67332 -12.50278 -12.30841 -11.92340 -11.73833 -11.53288 -11.12063 -10.90261 -10.76623 -10.39051 -9.90208 -9.37879 -8.10469 -8.02439 -6.14817 0.25150 0.46568 0.91975 1.42480 1.43219 1.50485 1.76336 2.45561 2.80985 3.23559 3.96559 3.99827 4.13994 4.15966 4.33747 4.35951 4.48038 4.60130 4.68109 4.75507 4.79756 4.83538 4.96019 5.03322 5.13703 5.22126 5.37426 5.43523 5.50783 5.58765 5.66539 5.75385 6.09409 6.13949 6.16622 6.42912 6.95841 7.50323 9.00947 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.008186 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.376894 B = 3419.457317 C = 4127.738619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.103 4.103 3 C -0.113 4.113 4 C -0.117 4.117 5 C -0.107 4.107 6 C -0.104 4.104 7 C -0.073 4.073 8 C -0.074 4.074 9 C 0.038 3.962 10 H 0.033 0.967 11 C -0.531 4.531 12 H 0.051 0.949 13 C 0.015 3.985 14 N -0.908 5.908 15 Si 0.948 3.052 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.275 1.275 19 C -0.111 4.111 20 C -0.079 4.079 21 S -0.172 6.172 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.063 0.937 25 H 0.154 0.846 26 H 0.160 0.840 27 H 0.136 0.864 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.258 0.742 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.446 12.541 -6.253 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.130 4.130 6 C -0.216 4.216 7 C -0.078 4.078 8 C -0.111 4.111 9 C 0.018 3.982 10 H 0.051 0.949 11 C -0.569 4.569 12 H 0.069 0.931 13 C -0.184 4.184 14 N -0.547 5.547 15 Si 0.774 3.226 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.200 1.200 19 C -0.150 4.150 20 C -0.226 4.226 21 S 0.068 5.932 22 H 0.088 0.912 23 H 0.109 0.891 24 H 0.082 0.918 25 H 0.172 0.828 26 H 0.178 0.822 27 H 0.154 0.846 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.481 12.051 -5.461 13.314 hybrid contribution -1.512 -0.889 -0.214 1.767 sum -0.030 11.163 -5.675 12.523 Atomic orbital electron populations 1.20932 0.90089 1.03496 1.02724 1.20444 0.97343 0.92407 1.00318 1.21315 0.94764 0.97635 0.99549 1.21385 0.94416 0.97972 0.99819 1.21408 1.00422 0.90856 1.00265 1.21509 0.95110 0.97072 1.07947 1.20433 0.92503 0.96285 0.98575 1.20942 0.98060 0.92331 0.99772 1.18939 0.94837 0.90675 0.93701 0.94888 1.21562 0.93684 1.09489 1.32204 0.93060 1.25674 0.97147 0.98558 0.96977 1.70029 1.17880 1.24732 1.42100 0.85777 0.79752 0.78223 0.78861 1.19640 1.21159 1.20010 1.21469 0.95129 1.01179 0.97241 1.23447 1.01871 0.99703 0.97620 1.85158 1.46349 1.08877 1.52789 0.91151 0.89134 0.91819 0.82846 0.82227 0.84588 0.92472 0.90920 0.93257 0.91223 0.94472 0.89768 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 8.98 71.24 0.64 -2.37 16 2 C -0.10 -3.21 5.88 -19.69 -0.12 -3.32 16 3 C -0.11 -2.84 9.64 22.17 0.21 -2.62 16 4 C -0.12 -2.86 10.07 22.19 0.22 -2.63 16 5 C -0.11 -3.28 9.66 22.48 0.22 -3.06 16 6 C -0.10 -3.95 5.70 22.53 0.13 -3.82 16 7 C -0.07 -2.81 5.63 -19.43 -0.11 -2.92 16 8 C -0.07 -3.13 3.97 29.97 0.12 -3.01 16 9 C 0.04 1.91 1.76 -11.52 -0.02 1.89 16 10 H 0.03 1.87 5.82 -7.71 -0.04 1.83 16 11 C -0.53 -29.38 8.47 25.60 0.22 -29.17 16 12 H 0.05 2.77 7.44 -2.92 -0.02 2.74 16 13 C 0.02 0.86 5.30 84.66 0.45 1.31 16 14 N -0.91 -52.85 11.31 21.45 0.24 -52.61 16 15 Si 0.95 43.92 29.54 68.60 2.03 45.95 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 17 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 19 C -0.11 -5.25 4.66 30.08 0.14 -5.10 16 20 C -0.08 -3.11 6.14 71.37 0.44 -2.67 16 21 S -0.17 -7.10 19.41 -56.49 -1.10 -8.19 16 22 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.09 1.75 8.07 -2.39 -0.02 1.73 16 24 H 0.06 1.78 6.17 -2.39 -0.01 1.76 16 25 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 26 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.06 2.32 7.60 -2.39 -0.02 2.31 16 29 H 0.07 3.04 5.27 -2.39 -0.01 3.03 16 30 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.07 3.76 5.98 -2.39 -0.01 3.74 16 32 H 0.04 1.71 8.00 -2.39 -0.02 1.69 16 33 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 34 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 Total: -1.00 -62.72 278.65 4.77 -57.95 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.06 Total: 14.42 kcal Atomic # 6 Polarization: -60.06 SS G_CDS: 2.54 Total: -57.52 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.24 Total: -52.61 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -7.10 SS G_CDS: -1.10 Total: -8.19 kcal Total: -62.72 4.77 -57.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261076256.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.072 kcal (2) G-P(sol) polarization free energy of solvation -62.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds