Wall clock time and date at job start Mon Mar 30 2020 06:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47112 * 2 1 4 4 C 1.50701 * 109.47378 * 239.99917 * 2 1 3 5 5 H 1.08004 * 119.99852 * 245.61408 * 4 2 1 6 6 C 1.37875 * 119.99872 * 65.60638 * 4 2 1 7 7 N 1.31514 * 119.99719 * 197.60724 * 6 4 2 8 8 Si 1.86797 * 119.99972 * 17.61490 * 6 4 2 9 9 H 1.48502 * 109.47093 * 179.97438 * 8 6 4 10 10 H 1.48491 * 109.47357 * 299.99290 * 8 6 4 11 11 H 1.48495 * 109.47309 * 59.99917 * 8 6 4 12 12 C 1.50698 * 109.47059 * 119.99945 * 2 1 3 13 13 C 1.37739 * 119.47714 * 59.99769 * 12 2 1 14 14 C 1.38275 * 120.54462 * 180.02562 * 13 12 2 15 15 C 1.38068 * 119.29477 * 0.18163 * 14 13 12 16 16 C 1.38780 * 120.16075 * 359.90674 * 15 14 13 17 17 C 1.38934 * 121.14089 * 359.50339 * 16 15 14 18 18 C 1.50867 * 115.35772 * 180.57238 * 17 16 15 19 19 C 1.54154 * 110.56240 * 339.66865 * 18 17 16 20 20 H 1.08998 * 111.09469 * 146.11311 * 19 18 17 21 21 C 1.53000 * 111.13255 * 270.19024 * 19 18 17 22 22 S 1.77433 * 130.57704 * 179.64129 * 16 15 14 23 23 H 1.09003 * 109.46856 * 186.17128 * 1 2 3 24 24 H 1.08998 * 109.47315 * 306.17194 * 1 2 3 25 25 H 1.09001 * 109.46632 * 66.17256 * 1 2 3 26 26 H 0.97004 * 120.00471 * 354.79717 * 7 6 4 27 27 H 1.08002 * 119.72939 * 0.06942 * 13 12 2 28 28 H 1.08006 * 120.35020 * 180.15779 * 14 13 12 29 29 H 1.08003 * 119.92138 * 179.89593 * 15 14 13 30 30 H 1.08998 * 109.42118 * 219.26066 * 18 17 16 31 31 H 1.08997 * 109.00358 * 99.81026 * 18 17 16 32 32 H 1.09001 * 109.47067 * 173.17464 * 21 19 18 33 33 H 1.09002 * 109.47148 * 293.17280 * 21 19 18 34 34 H 1.09002 * 109.47216 * 53.17253 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5765 -1.6384 -1.1339 6 6 1.7973 -0.1758 -2.4794 7 7 1.9141 -0.9304 -3.5502 8 14 1.3130 1.6201 -2.6505 9 1 1.1192 1.9459 -4.0864 10 1 0.0481 1.8643 -1.9121 11 1 2.3874 2.4782 -2.0895 12 6 2.0323 -0.7104 1.2305 13 6 1.6930 -2.0291 1.4378 14 6 2.1412 -2.7022 2.5594 15 6 2.9319 -2.0371 3.4753 16 6 3.2723 -0.7079 3.2673 17 6 2.8389 -0.0233 2.1387 18 6 3.2963 1.4108 2.0377 19 6 3.7118 1.9455 3.4225 20 1 4.5367 2.6530 3.3385 21 6 2.5224 2.5752 4.1503 22 16 4.2491 0.4006 4.2499 23 1 -0.3633 -1.0218 0.1105 24 1 -0.3634 0.6065 0.8296 25 1 -0.3633 0.4152 -0.9401 26 1 2.2383 -1.8410 -3.4689 27 1 1.0722 -2.5419 0.7179 28 1 1.8753 -3.7369 2.7175 29 1 3.2862 -2.5525 4.3558 30 1 2.4849 2.0231 1.6442 31 1 4.1487 1.4646 1.3605 32 1 2.8147 2.8336 5.1681 33 1 2.2090 3.4760 3.6225 34 1 1.6963 1.8647 4.1788 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078235.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:20 Heat of formation + Delta-G solvation = -8.712164 kcal Electronic energy + Delta-G solvation = -15982.952456 eV Core-core repulsion = 13584.210346 eV Total energy + Delta-G solvation = -2398.742109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67146 -36.54824 -36.22323 -33.74515 -31.88843 -30.28325 -27.67123 -26.76256 -24.72133 -23.48612 -21.81459 -21.32723 -19.52527 -18.16959 -16.49709 -16.35988 -16.21058 -16.08850 -15.63801 -15.04142 -14.52281 -14.26740 -14.13369 -13.80362 -13.63428 -13.52618 -13.14969 -12.97285 -12.53358 -12.39350 -12.29854 -12.17104 -11.85379 -11.64699 -11.39511 -11.04913 -10.97367 -10.53441 -10.35984 -9.49940 -8.70085 -8.37434 -6.34881 0.24560 0.45524 0.65668 1.26616 1.45640 1.52781 1.71627 2.49396 2.74613 3.07555 3.48680 3.72230 3.88908 3.96150 4.14659 4.31334 4.44032 4.49411 4.52125 4.65713 4.72346 4.79015 4.85660 4.89833 4.90978 5.06299 5.14234 5.22652 5.25012 5.32364 5.42320 5.58602 5.80402 6.00281 6.03497 6.13740 6.58108 7.41942 8.64789 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024779 B = 0.008171 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.721737 B = 3426.053352 C = 4074.972371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.044 3.956 3 H 0.037 0.963 4 C -0.588 4.588 5 H 0.014 0.986 6 C -0.021 4.021 7 N -0.940 5.940 8 Si 1.079 2.921 9 H -0.293 1.293 10 H -0.239 1.239 11 H -0.260 1.260 12 C -0.032 4.032 13 C -0.129 4.129 14 C -0.104 4.104 15 C -0.111 4.111 16 C -0.093 4.093 17 C -0.123 4.123 18 C -0.087 4.087 19 C -0.040 4.040 20 H 0.143 0.857 21 C -0.135 4.135 22 S -0.172 6.172 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.250 0.750 27 H 0.109 0.891 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.494 6.515 16.273 17.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 H 0.055 0.945 4 C -0.626 4.626 5 H 0.033 0.967 6 C -0.218 4.218 7 N -0.576 5.576 8 Si 0.900 3.100 9 H -0.219 1.219 10 H -0.163 1.163 11 H -0.185 1.185 12 C -0.034 4.034 13 C -0.149 4.149 14 C -0.123 4.123 15 C -0.135 4.135 16 C -0.205 4.205 17 C -0.129 4.129 18 C -0.125 4.125 19 C -0.168 4.168 20 H 0.160 0.840 21 C -0.193 4.193 22 S 0.070 5.930 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.171 0.829 29 H 0.161 0.839 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.922 7.552 16.204 17.901 hybrid contribution -0.117 -1.982 -0.640 2.086 sum 0.805 5.570 15.564 16.550 Atomic orbital electron populations 1.22139 0.96701 1.00569 1.00383 1.18139 0.93373 0.95506 0.90474 0.94507 1.22089 1.39267 1.08429 0.92771 0.96717 1.27210 0.94314 1.08469 0.91808 1.70998 1.44459 1.09401 1.32760 0.83666 0.79188 0.70845 0.76339 1.21890 1.16337 1.18527 1.19998 0.94571 0.94390 0.94455 1.20926 1.01603 0.94318 0.98016 1.21313 0.97225 1.00556 0.93253 1.20564 0.99910 0.92142 1.00848 1.22168 1.02161 0.98198 0.97990 1.20899 1.00328 0.96708 0.94924 1.21021 1.02619 0.91548 0.97298 1.24196 1.03213 0.95131 0.94248 0.83959 1.21957 0.95362 1.00942 1.01071 1.85667 1.56631 1.02571 1.48160 0.94031 0.92912 0.93335 0.94092 0.87261 0.82907 0.83883 0.88572 0.89830 0.90070 0.89320 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.85 8.77 71.98 0.63 -5.22 16 2 C 0.04 2.02 2.01 -12.29 -0.02 1.99 16 3 H 0.04 1.62 4.96 -2.39 -0.01 1.61 16 4 C -0.59 -33.01 8.50 25.60 0.22 -32.79 16 5 H 0.01 0.92 7.76 -2.91 -0.02 0.90 16 6 C -0.02 -1.18 5.29 84.65 0.45 -0.73 16 7 N -0.94 -58.87 13.70 21.45 0.29 -58.57 16 8 Si 1.08 48.46 26.29 68.60 1.80 50.26 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 10 H -0.24 -9.40 5.76 99.48 0.57 -8.83 16 11 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 12 C -0.03 -1.36 4.78 -19.66 -0.09 -1.45 16 13 C -0.13 -5.12 8.48 22.16 0.19 -4.94 16 14 C -0.10 -3.38 10.08 22.24 0.22 -3.16 16 15 C -0.11 -3.51 10.05 22.36 0.22 -3.28 16 16 C -0.09 -3.16 6.48 22.57 0.15 -3.01 16 17 C -0.12 -4.55 5.94 -19.33 -0.11 -4.67 16 18 C -0.09 -2.64 5.00 30.29 0.15 -2.49 16 19 C -0.04 -0.92 4.04 30.98 0.13 -0.80 16 20 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 21 C -0.13 -2.57 9.31 71.98 0.67 -1.90 16 22 S -0.17 -4.83 22.56 -56.49 -1.27 -6.10 16 23 H 0.04 1.72 7.13 -2.39 -0.02 1.71 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.05 2.07 4.89 -2.39 -0.01 2.06 16 26 H 0.25 15.99 8.73 -92.71 -0.81 15.19 16 27 H 0.11 4.59 7.46 -2.91 -0.02 4.57 16 28 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 29 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 30 H 0.10 2.77 6.97 -2.39 -0.02 2.75 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -65.96 284.12 4.53 -61.43 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.91 Total: 15.41 kcal Atomic # 6 Polarization: -65.22 SS G_CDS: 2.79 Total: -62.43 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.29 Total: -58.57 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.80 Total: 50.26 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.27 Total: -6.10 kcal Total: -65.96 4.53 -61.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078235.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.719 kcal (2) G-P(sol) polarization free energy of solvation -65.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds