Wall clock time and date at job start Mon Mar 30 2020 06:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47337 * 2 1 4 4 C 1.50700 * 109.47346 * 120.00816 * 2 1 3 5 5 H 1.07994 * 120.00469 * 119.99770 * 4 2 1 6 6 C 1.37883 * 119.99607 * 299.99592 * 4 2 1 7 7 N 1.31506 * 119.99686 * 180.02562 * 6 4 2 8 8 Si 1.86807 * 119.99991 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.47078 * 89.99579 * 8 6 4 10 10 H 1.48495 * 109.46918 * 210.00050 * 8 6 4 11 11 H 1.48506 * 109.46971 * 329.99819 * 8 6 4 12 12 C 1.50709 * 109.46795 * 240.00723 * 2 1 3 13 13 C 1.37740 * 119.46949 * 299.97339 * 12 2 1 14 14 C 1.38278 * 120.54314 * 179.82727 * 13 12 2 15 15 C 1.38073 * 119.29084 * 0.64528 * 14 13 12 16 16 C 1.38780 * 120.15856 * 359.39843 * 15 14 13 17 17 C 1.38935 * 121.14674 * 0.11835 * 16 15 14 18 18 C 1.50873 * 115.36652 * 180.50294 * 17 16 15 19 19 C 1.54136 * 110.51002 * 339.44923 * 18 17 16 20 20 H 1.08999 * 111.09940 * 270.32721 * 19 18 17 21 21 C 1.53007 * 111.13199 * 146.25150 * 19 18 17 22 22 S 1.77431 * 130.58002 * 179.97438 * 16 15 14 23 23 H 1.09001 * 109.47500 * 59.99437 * 1 2 3 24 24 H 1.08997 * 109.47088 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47109 * 299.99578 * 1 2 3 26 26 H 0.97005 * 119.99716 * 180.02562 * 7 6 4 27 27 H 1.07999 * 119.73196 * 0.08402 * 13 12 2 28 28 H 1.07998 * 120.35752 * 180.41448 * 14 13 12 29 29 H 1.08002 * 119.92478 * 179.68222 * 15 14 13 30 30 H 1.08990 * 109.27372 * 219.16793 * 18 17 16 31 31 H 1.09000 * 109.21055 * 99.69048 * 18 17 16 32 32 H 1.08998 * 109.46991 * 306.82476 * 21 19 18 33 33 H 1.09005 * 109.46839 * 66.82240 * 21 19 18 34 34 H 1.08990 * 109.47220 * 186.82067 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2396 2.4827 7 7 2.1381 -0.8593 3.5563 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8725 2.6998 10 1 0.9760 1.9948 3.9069 11 1 0.8471 2.1764 1.4921 12 6 2.0322 -0.7103 -1.2306 13 6 1.6932 -2.0292 -1.4376 14 6 2.1389 -2.7014 -2.5609 15 6 2.9408 -2.0403 -3.4699 16 6 3.2830 -0.7117 -3.2609 17 6 2.8339 -0.0214 -2.1419 18 6 3.2743 1.4187 -2.0509 19 6 4.5170 1.6599 -2.9302 20 1 5.4348 1.4822 -2.3697 21 6 4.5048 3.0683 -3.5281 22 16 4.2802 0.3897 -4.2308 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5282 4.4374 27 1 1.0708 -2.5414 -0.7188 28 1 1.8657 -3.7335 -2.7235 29 1 3.2988 -2.5570 -4.3481 30 1 3.5149 1.6566 -1.0149 31 1 2.4634 2.0638 -2.3891 32 1 3.5583 3.2366 -4.0420 33 1 4.6209 3.8025 -2.7308 34 1 5.3262 3.1691 -4.2373 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078237.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:23 Heat of formation + Delta-G solvation = -1.523729 kcal Electronic energy + Delta-G solvation = -15880.227902 eV Core-core repulsion = 13481.797506 eV Total energy + Delta-G solvation = -2398.430396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62682 -36.51102 -36.21870 -33.76395 -32.11861 -30.37842 -27.47348 -27.10718 -24.87144 -23.47346 -21.85100 -21.36639 -18.73357 -18.13388 -16.96091 -16.72056 -16.32233 -16.01029 -15.47989 -14.93647 -14.76490 -14.43828 -14.11214 -13.87056 -13.44826 -13.32967 -13.18290 -12.91121 -12.78452 -12.65847 -12.38582 -12.22602 -11.86995 -11.68547 -11.34646 -11.14805 -10.93715 -10.74591 -10.43518 -9.41221 -8.35937 -8.29684 -6.34580 0.27671 0.48164 0.66647 1.28112 1.30525 1.35079 1.45905 2.31100 2.77306 3.05411 3.46956 3.73436 3.92150 3.98174 4.17398 4.27924 4.45657 4.48103 4.55139 4.67314 4.69918 4.73083 4.81614 4.84860 4.94853 5.04923 5.10235 5.19856 5.23415 5.33403 5.41545 5.56172 5.63178 5.91743 6.04798 6.31123 6.71311 7.29782 8.86272 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024195 B = 0.007919 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.984242 B = 3535.168770 C = 4228.949696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.039 3.961 3 H 0.037 0.963 4 C -0.508 4.508 5 H 0.031 0.969 6 C 0.014 3.986 7 N -0.948 5.948 8 Si 0.948 3.052 9 H -0.267 1.267 10 H -0.300 1.300 11 H -0.244 1.244 12 C -0.033 4.033 13 C -0.124 4.124 14 C -0.102 4.102 15 C -0.109 4.109 16 C -0.096 4.096 17 C -0.126 4.126 18 C -0.085 4.085 19 C -0.044 4.044 20 H 0.105 0.895 21 C -0.126 4.126 22 S -0.168 6.168 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.035 0.965 26 H 0.266 0.734 27 H 0.117 0.883 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.031 5.585 -15.194 16.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.020 3.980 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.050 0.950 6 C -0.183 4.183 7 N -0.589 5.589 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.227 1.227 11 H -0.168 1.168 12 C -0.035 4.035 13 C -0.144 4.144 14 C -0.122 4.122 15 C -0.132 4.132 16 C -0.208 4.208 17 C -0.131 4.131 18 C -0.123 4.123 19 C -0.173 4.173 20 H 0.123 0.877 21 C -0.184 4.184 22 S 0.073 5.927 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.053 0.947 26 H 0.075 0.925 27 H 0.135 0.865 28 H 0.174 0.826 29 H 0.162 0.838 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.536 5.623 -16.267 17.280 hybrid contribution -0.828 0.036 2.194 2.345 sum 0.708 5.658 -14.073 15.185 Atomic orbital electron populations 1.22089 0.96793 1.01423 0.99563 1.18264 0.93202 0.95796 0.90696 0.94535 1.21155 1.30969 1.12297 0.90130 0.95026 1.25841 0.97227 0.99925 0.95291 1.70041 1.47631 1.42564 0.98621 0.85858 0.79128 0.80129 0.77395 1.19311 1.22743 1.16764 1.19895 0.95149 0.94392 0.94018 1.20997 1.01256 0.94124 0.97981 1.21345 0.96916 1.00693 0.93230 1.20596 1.00089 0.91593 1.00950 1.22175 1.02960 0.97751 0.97962 1.20917 1.00467 0.96113 0.95583 1.21019 0.97445 0.92315 1.01534 1.24123 1.00600 0.97545 0.94994 0.87723 1.21721 1.03815 0.91089 1.01786 1.85629 1.64492 1.20975 1.21610 0.92309 0.92681 0.94672 0.92522 0.86491 0.82626 0.83831 0.89936 0.88278 0.91063 0.89165 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.82 8.48 71.98 0.61 -5.21 16 2 C 0.04 1.79 2.02 -12.28 -0.02 1.77 16 3 H 0.04 1.65 5.37 -2.39 -0.01 1.64 16 4 C -0.51 -28.49 8.79 25.60 0.23 -28.26 16 5 H 0.03 2.00 7.83 -2.91 -0.02 1.98 16 6 C 0.01 0.81 5.45 84.66 0.46 1.28 16 7 N -0.95 -58.79 13.96 21.45 0.30 -58.49 16 8 Si 0.95 43.92 24.37 68.60 1.67 45.59 16 9 H -0.27 -11.81 6.87 99.48 0.68 -11.13 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.24 -10.30 6.53 99.48 0.65 -9.65 16 12 C -0.03 -1.36 4.77 -19.66 -0.09 -1.45 16 13 C -0.12 -4.78 8.60 22.16 0.19 -4.59 16 14 C -0.10 -3.22 10.08 22.24 0.22 -3.00 16 15 C -0.11 -3.37 10.05 22.36 0.22 -3.15 16 16 C -0.10 -3.27 6.48 22.57 0.15 -3.12 16 17 C -0.13 -4.65 5.94 -19.33 -0.11 -4.76 16 18 C -0.09 -2.63 5.04 30.29 0.15 -2.48 16 19 C -0.04 -1.11 4.04 30.98 0.13 -0.98 16 20 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 21 C -0.13 -2.22 9.31 71.98 0.67 -1.55 16 22 S -0.17 -4.78 22.56 -56.49 -1.27 -6.06 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.05 2.22 7.33 -2.39 -0.02 2.20 16 25 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 26 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 27 H 0.12 4.67 7.49 -2.91 -0.02 4.65 16 28 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 29 H 0.14 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.08 2.73 7.21 -2.39 -0.02 2.72 16 31 H 0.10 2.75 7.79 -2.39 -0.02 2.73 16 32 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.26 281.77 4.50 -60.76 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.01 Total: 13.71 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 2.80 Total: -55.51 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.30 Total: -58.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.67 Total: 45.59 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.27 Total: -6.06 kcal Total: -65.26 4.50 -60.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078237.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.239 kcal (2) G-P(sol) polarization free energy of solvation -65.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds