Wall clock time and date at job start Mon Mar 30 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 C 1.37743 * 119.46883 * 59.72797 * 12 2 1 14 14 C 1.38289 * 120.54356 * 179.84378 * 13 12 2 15 15 C 1.38071 * 119.29035 * 0.41187 * 14 13 12 16 16 C 1.38786 * 120.15799 * 359.69260 * 15 14 13 17 17 C 1.38927 * 121.14821 * 0.22674 * 16 15 14 18 18 C 1.50879 * 115.36201 * 179.49958 * 17 16 15 19 19 C 1.54137 * 110.51663 * 20.50119 * 18 17 16 20 20 H 1.09007 * 111.09745 * 213.78011 * 19 18 17 21 21 C 1.53000 * 111.09641 * 89.73477 * 19 18 17 22 22 S 1.77431 * 130.57049 * 180.36688 * 16 15 14 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08004 * 119.73160 * 0.12420 * 13 12 2 28 28 H 1.07990 * 120.35525 * 180.16470 * 14 13 12 29 29 H 1.07997 * 119.92304 * 179.67387 * 15 14 13 30 30 H 1.08996 * 109.27236 * 140.78415 * 18 17 16 31 31 H 1.09001 * 109.27414 * 260.21672 * 18 17 16 32 32 H 1.09009 * 109.47249 * 59.99852 * 21 19 18 33 33 H 1.09001 * 109.47078 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.47346 * 299.99533 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 6 1.6883 -2.0274 1.4406 14 6 2.1395 -2.7016 2.5605 15 6 2.9339 -2.0379 3.4741 16 6 3.2788 -0.7102 3.2634 17 6 2.8339 -0.0215 2.1418 18 6 3.2769 1.4179 2.0494 19 6 4.5168 1.6593 2.9327 20 1 4.5071 2.6635 3.3565 21 6 5.8075 1.4076 2.1507 22 16 4.2748 0.3915 4.2341 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 1.0647 -2.5392 0.7225 28 1 1.8700 -3.7350 2.7208 29 1 3.2876 -2.5530 4.3549 30 1 3.5216 1.6531 1.0136 31 1 2.4662 2.0659 2.3823 32 1 5.8518 2.0824 1.2957 33 1 6.6656 1.5860 2.7987 34 1 5.8248 0.3756 1.8003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:29 Heat of formation + Delta-G solvation = 5.911357 kcal Electronic energy + Delta-G solvation = -15931.236617 eV Core-core repulsion = 13533.128631 eV Total energy + Delta-G solvation = -2398.107986 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.10961 -35.11180 -34.41252 -31.48687 -30.54473 -28.25638 -26.32081 -25.17190 -23.20611 -22.05768 -20.38388 -19.81190 -16.80551 -16.27505 -14.99764 -14.84032 -14.77996 -14.71695 -14.36853 -13.11314 -12.93398 -12.74293 -12.43410 -12.29475 -12.09544 -11.52154 -11.28164 -11.18078 -11.04252 -10.90108 -10.83041 -10.78841 -10.37419 -10.18786 -9.82765 -9.33626 -9.09362 -8.99258 -8.41425 -7.82476 -7.04399 -6.06411 -4.13368 1.71623 1.93878 2.03499 2.58098 3.27601 3.32443 3.35543 4.25891 4.41584 4.78061 4.97201 5.10052 5.24444 5.41510 5.44294 5.68231 5.84140 5.88539 5.96818 6.00798 6.08923 6.18244 6.30363 6.45720 6.61975 6.77782 6.78863 6.95419 7.08318 7.14691 7.25555 7.57207 7.67180 7.89937 8.03550 8.33260 8.88885 9.51407 10.99039 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.007439 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.880782 B = 3762.951134 C = 4192.074271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.037 0.963 4 C -0.508 4.508 5 H 0.056 0.944 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.287 1.287 10 H -0.277 1.277 11 H -0.277 1.277 12 C -0.007 4.007 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.080 4.080 17 C -0.109 4.109 18 C -0.082 4.082 19 C -0.048 4.048 20 H 0.113 0.887 21 C -0.138 4.138 22 S -0.183 6.183 23 H 0.008 0.992 24 H 0.086 0.914 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.563 -0.242 9.284 10.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.009 4.009 13 C -0.130 4.130 14 C -0.132 4.132 15 C -0.138 4.138 16 C -0.192 4.192 17 C -0.114 4.114 18 C -0.120 4.120 19 C -0.176 4.176 20 H 0.132 0.868 21 C -0.197 4.197 22 S 0.058 5.942 23 H 0.027 0.973 24 H 0.105 0.895 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.962 -0.073 10.393 11.517 hybrid contribution -0.168 -0.537 -2.070 2.146 sum 4.794 -0.610 8.323 9.624 Atomic orbital electron populations 1.21795 0.97541 0.99385 1.00293 1.17945 0.92899 0.95639 0.88472 0.94487 1.21059 1.31326 1.12451 0.89794 0.92528 1.24946 0.94992 0.94983 0.98898 1.69871 1.36507 1.22828 1.23582 0.86654 0.79262 0.79838 0.82275 1.21246 1.20258 1.20214 1.20424 0.92219 0.93512 0.94765 1.20937 1.00519 0.94466 0.97058 1.21016 0.98148 0.99232 0.94760 1.20139 1.01554 0.91874 1.00282 1.21806 1.02807 0.96848 0.97727 1.20633 1.00780 0.94626 0.95363 1.20933 0.95619 0.93699 1.01739 1.24006 0.98563 0.99204 0.95855 0.86850 1.21958 0.94871 1.03187 0.99673 1.85654 1.65271 1.21941 1.21285 0.97307 0.89532 0.95197 0.92845 0.85545 0.86143 0.86803 0.88390 0.89631 0.91210 0.92011 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.77 37.16 0.33 -2.80 16 2 C 0.07 1.66 2.43 -92.93 -0.23 1.44 16 3 H 0.04 0.95 6.32 -51.92 -0.33 0.62 16 4 C -0.51 -13.43 8.21 -34.44 -0.28 -13.71 16 5 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 8 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C -0.01 -0.16 4.77 -104.31 -0.50 -0.66 16 13 C -0.11 -2.17 8.61 -39.74 -0.34 -2.51 16 14 C -0.11 -1.89 10.08 -39.62 -0.40 -2.29 16 15 C -0.12 -1.96 10.05 -39.44 -0.40 -2.36 16 16 C -0.08 -1.46 6.48 -39.12 -0.25 -1.72 16 17 C -0.11 -2.13 5.94 -103.79 -0.62 -2.75 16 18 C -0.08 -1.40 4.99 -27.20 -0.14 -1.53 16 19 C -0.05 -0.68 4.04 -26.14 -0.11 -0.78 16 20 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 21 C -0.14 -1.82 9.30 37.16 0.35 -1.47 16 22 S -0.18 -2.91 22.56 -107.50 -2.43 -5.34 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 25 H 0.03 0.67 7.31 -51.93 -0.38 0.29 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.13 2.49 7.48 -52.48 -0.39 2.10 16 28 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.10 1.76 6.99 -51.93 -0.36 1.40 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 288.77 15.07 4.35 4.35 Total: -1.00 -27.67 288.77 -9.84 -37.51 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.69 Total: 1.12 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -2.68 Total: -29.55 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.63 Total: -23.88 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.43 Total: -5.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.67 -9.84 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.423 kcal (2) G-P(sol) polarization free energy of solvation -27.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds