Wall clock time and date at job start Mon Mar 30 2020 06:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 C 1.37743 * 119.46883 * 59.72797 * 12 2 1 14 14 C 1.38289 * 120.54356 * 179.84378 * 13 12 2 15 15 C 1.38071 * 119.29035 * 0.41187 * 14 13 12 16 16 C 1.38786 * 120.15799 * 359.69260 * 15 14 13 17 17 C 1.38927 * 121.14821 * 0.22674 * 16 15 14 18 18 C 1.50879 * 115.36201 * 179.49958 * 17 16 15 19 19 C 1.54137 * 110.51663 * 20.50119 * 18 17 16 20 20 H 1.09007 * 111.09745 * 213.78011 * 19 18 17 21 21 C 1.53000 * 111.09641 * 89.73477 * 19 18 17 22 22 S 1.77431 * 130.57049 * 180.36688 * 16 15 14 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 1.08004 * 119.73160 * 0.12420 * 13 12 2 28 28 H 1.07990 * 120.35525 * 180.16470 * 14 13 12 29 29 H 1.07997 * 119.92304 * 179.67387 * 15 14 13 30 30 H 1.08996 * 109.27236 * 140.78415 * 18 17 16 31 31 H 1.09001 * 109.27414 * 260.21672 * 18 17 16 32 32 H 1.09009 * 109.47249 * 59.99852 * 21 19 18 33 33 H 1.09001 * 109.47078 * 179.97438 * 21 19 18 34 34 H 1.08994 * 109.47346 * 299.99533 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 6 2.0323 -0.7103 1.2305 13 6 1.6883 -2.0274 1.4406 14 6 2.1395 -2.7016 2.5605 15 6 2.9339 -2.0379 3.4741 16 6 3.2788 -0.7102 3.2634 17 6 2.8339 -0.0215 2.1418 18 6 3.2769 1.4179 2.0494 19 6 4.5168 1.6593 2.9327 20 1 4.5071 2.6635 3.3565 21 6 5.8075 1.4076 2.1507 22 16 4.2748 0.3915 4.2341 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.7088 1.1611 -3.4845 27 1 1.0647 -2.5392 0.7225 28 1 1.8700 -3.7350 2.7208 29 1 3.2876 -2.5530 4.3549 30 1 3.5216 1.6531 1.0136 31 1 2.4662 2.0659 2.3823 32 1 5.8518 2.0824 1.2957 33 1 6.6656 1.5860 2.7987 34 1 5.8248 0.3756 1.8003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:29 Heat of formation + Delta-G solvation = -6.203174 kcal Electronic energy + Delta-G solvation = -15931.761943 eV Core-core repulsion = 13533.128631 eV Total energy + Delta-G solvation = -2398.633311 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.56483 -36.48044 -36.15081 -33.35515 -31.83885 -29.89382 -27.62542 -27.20855 -24.72933 -23.44661 -21.78108 -21.42619 -18.41495 -18.05381 -16.65925 -16.28064 -16.25903 -16.03280 -15.79886 -14.77461 -14.49206 -14.13578 -13.83199 -13.72298 -13.48675 -13.36441 -12.89417 -12.78290 -12.59075 -12.47019 -12.40322 -12.18908 -12.17160 -11.92706 -11.32358 -11.08085 -10.81957 -10.47730 -10.41100 -9.34706 -8.33742 -8.10349 -6.23893 0.31700 0.54121 0.70487 1.28736 1.41351 1.41653 1.49477 2.41659 2.84592 3.17320 3.53252 3.78068 3.89366 4.06665 4.23489 4.36903 4.54772 4.59700 4.66747 4.70795 4.83422 4.86256 4.89877 4.93865 5.11865 5.19663 5.22510 5.31858 5.40884 5.49232 5.56338 5.68240 5.99551 6.06911 6.15458 6.35630 6.83704 7.43585 8.93615 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024819 B = 0.007439 C = 0.006678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.880782 B = 3762.951134 C = 4192.074271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.072 3.928 3 H 0.013 0.987 4 C -0.520 4.520 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.949 3.051 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.271 1.271 12 C -0.037 4.037 13 C -0.126 4.126 14 C -0.102 4.102 15 C -0.113 4.113 16 C -0.095 4.095 17 C -0.126 4.126 18 C -0.083 4.083 19 C -0.041 4.041 20 H 0.144 0.856 21 C -0.135 4.135 22 S -0.166 6.166 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.262 0.738 27 H 0.118 0.882 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -0.906 10.642 12.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.054 3.946 3 H 0.031 0.969 4 C -0.558 4.558 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.775 3.225 9 H -0.208 1.208 10 H -0.200 1.200 11 H -0.197 1.197 12 C -0.038 4.038 13 C -0.146 4.146 14 C -0.121 4.121 15 C -0.136 4.136 16 C -0.207 4.207 17 C -0.131 4.131 18 C -0.121 4.121 19 C -0.169 4.169 20 H 0.162 0.838 21 C -0.194 4.194 22 S 0.075 5.925 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.128 -0.739 11.759 13.281 hybrid contribution -0.514 -0.323 -2.423 2.498 sum 5.615 -1.062 9.337 10.946 Atomic orbital electron populations 1.21643 0.97559 0.99253 0.99574 1.17762 0.92914 0.94463 0.89476 0.96858 1.21307 1.31114 1.12268 0.91096 0.93360 1.25649 0.95240 0.95667 1.01528 1.69991 1.37412 1.23928 1.24061 0.85742 0.78714 0.78934 0.79086 1.20813 1.19971 1.19668 1.20270 0.94393 0.94537 0.94646 1.20982 1.01227 0.94110 0.98280 1.21347 0.96878 1.00652 0.93224 1.20570 1.00539 0.91540 1.00946 1.22169 1.02970 0.97769 0.97770 1.20875 1.00740 0.95856 0.95676 1.20953 0.97135 0.92625 1.01366 1.24146 0.97531 1.00295 0.94926 0.83815 1.21945 0.95213 1.01890 1.00346 1.85539 1.64340 1.21536 1.21059 0.96048 0.92020 0.94923 0.92886 0.86408 0.82532 0.83885 0.90266 0.89343 0.90421 0.89632 0.93959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.77 71.98 0.63 -5.32 16 2 C 0.07 3.61 2.43 -12.29 -0.03 3.58 16 3 H 0.01 0.71 6.32 -2.38 -0.02 0.70 16 4 C -0.52 -28.18 8.21 25.60 0.21 -27.97 16 5 H 0.05 2.63 7.59 -2.91 -0.02 2.61 16 6 C 0.02 0.98 5.30 84.66 0.45 1.43 16 7 N -0.91 -51.64 11.32 21.45 0.24 -51.40 16 8 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 12 C -0.04 -1.60 4.77 -19.67 -0.09 -1.69 16 13 C -0.13 -4.95 8.61 22.16 0.19 -4.76 16 14 C -0.10 -3.22 10.08 22.24 0.22 -3.00 16 15 C -0.11 -3.55 10.05 22.36 0.22 -3.33 16 16 C -0.09 -3.32 6.48 22.57 0.15 -3.17 16 17 C -0.13 -4.94 5.94 -19.33 -0.11 -5.05 16 18 C -0.08 -2.81 4.99 30.29 0.15 -2.66 16 19 C -0.04 -1.08 4.04 30.98 0.13 -0.96 16 20 H 0.14 2.95 8.14 -2.38 -0.02 2.93 16 21 C -0.14 -3.32 9.30 71.98 0.67 -2.65 16 22 S -0.17 -4.89 22.56 -56.49 -1.27 -6.17 16 23 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 25 H 0.03 1.50 7.31 -2.39 -0.02 1.48 16 26 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.12 4.70 7.48 -2.91 -0.02 4.68 16 28 H 0.16 3.75 8.06 -2.92 -0.02 3.73 16 29 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.08 2.95 6.99 -2.39 -0.02 2.94 16 31 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -59.82 288.77 4.86 -54.97 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.08 Total: 13.06 kcal Atomic # 6 Polarization: -58.33 SS G_CDS: 2.78 Total: -55.55 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: 0.24 Total: -51.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -1.27 Total: -6.17 kcal Total: -59.82 4.86 -54.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.763 kcal (2) G-P(sol) polarization free energy of solvation -59.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds