Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34211 * 125.04358 * 2 1 4 4 C 1.46499 * 106.99595 * 180.02562 * 3 2 1 5 5 C 1.40627 * 106.06819 * 0.02562 * 4 3 2 6 6 C 1.39125 * 119.44829 * 179.97438 * 5 4 3 7 7 C 1.37753 * 119.96334 * 0.02562 * 6 5 4 8 8 C 1.38793 * 120.69169 * 0.07060 * 7 6 5 9 9 C 1.50694 * 119.82352 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.47602 * 219.92497 * 9 8 7 11 11 N 1.46903 * 109.47156 * 339.92580 * 9 8 7 12 12 C 1.50700 * 109.47257 * 99.92123 * 9 8 7 13 13 H 1.08001 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37881 * 120.00174 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99868 * 180.02562 * 14 12 9 16 16 Si 1.86794 * 120.00056 * 0.02562 * 14 12 9 17 17 H 1.48509 * 109.47102 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47170 * 209.99688 * 16 14 12 19 19 H 1.48497 * 109.47022 * 330.00222 * 16 14 12 20 20 C 1.37869 * 120.35349 * 359.88693 * 8 7 6 21 21 F 1.35101 * 120.19187 * 180.02562 * 20 8 7 22 22 N 1.36886 * 125.03623 * 180.02562 * 2 1 3 23 23 H 0.96997 * 125.06617 * 359.97438 * 22 2 1 24 24 H 1.08994 * 109.47514 * 269.97123 * 1 2 3 25 25 H 1.09002 * 109.46826 * 29.97654 * 1 2 3 26 26 H 1.09007 * 109.47391 * 149.96857 * 1 2 3 27 27 H 1.07997 * 126.50134 * 0.03779 * 3 2 1 28 28 H 1.08001 * 120.01714 * 179.72253 * 6 5 4 29 29 H 1.08001 * 119.65426 * 179.97438 * 7 6 5 30 30 H 1.00902 * 110.99884 * 59.99879 * 11 9 8 31 31 H 1.00905 * 111.00143 * 183.95304 * 11 9 8 32 32 H 0.96998 * 119.99731 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 3.6705 0.6449 -0.0006 5 6 3.6220 -0.7605 -0.0016 6 6 4.8091 -1.4859 -0.0029 7 6 6.0185 -0.8263 -0.0027 8 6 6.0689 0.5607 0.0002 9 6 7.4027 1.2621 0.0010 10 1 7.3579 2.1273 0.6623 11 7 8.4419 0.3377 0.4738 12 6 7.7325 1.7156 -1.3978 13 1 7.0449 1.5162 -2.2064 14 6 8.9117 2.3860 -1.6452 15 7 9.1993 2.7822 -2.8658 16 14 10.1007 2.7316 -0.2466 17 1 11.0580 1.6032 -0.1205 18 1 10.8465 3.9842 -0.5290 19 1 9.3430 2.8817 1.0216 20 6 4.9053 1.3002 0.0007 21 9 4.9582 2.6501 0.0030 22 7 2.2929 -1.1208 -0.0005 23 1 1.9627 -2.0329 -0.0006 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5143 27 1 1.9358 2.1232 0.0006 28 1 4.7825 -2.5656 0.0009 29 1 6.9370 -1.3944 -0.0033 30 1 8.5032 -0.4734 -0.1233 31 1 9.3345 0.8028 0.5447 32 1 10.0287 3.2542 -3.0398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261086180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = 13.997288 kcal Electronic energy + Delta-G solvation = -17608.517422 eV Core-core repulsion = 14676.839643 eV Total energy + Delta-G solvation = -2931.677779 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.94308 -40.90346 -37.24992 -34.38402 -31.89599 -31.51515 -30.51404 -28.79159 -26.37467 -25.95336 -22.82929 -21.45561 -20.29782 -19.68880 -17.75508 -17.06687 -16.13166 -15.70299 -14.99631 -14.79460 -14.49389 -14.37584 -14.17506 -13.55444 -13.25190 -12.84829 -12.77687 -12.44338 -12.39387 -12.16627 -11.78172 -11.60899 -10.97549 -10.75124 -10.68623 -10.29866 -10.07506 -9.49721 -9.18935 -8.72733 -7.82995 -7.50669 -7.06319 -6.17350 -4.20223 1.45644 2.06023 2.88308 3.16605 3.24651 3.32004 3.33643 4.28164 4.28587 4.71468 4.95556 5.09402 5.13086 5.28812 5.37883 5.48723 5.54982 5.62070 5.70911 5.81306 6.04930 6.20381 6.28577 6.58786 6.76156 6.93469 6.95738 7.04373 7.27638 7.48053 7.61772 7.73594 8.08726 8.29549 8.52167 8.89934 9.41525 10.95498 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.006259 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.115873 B = 4472.142151 C = 4782.718776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.063 3.937 3 C -0.190 4.190 4 C -0.143 4.143 5 C 0.109 3.891 6 C -0.153 4.153 7 C -0.055 4.055 8 C -0.084 4.084 9 C 0.213 3.787 10 H 0.053 0.947 11 N -0.848 5.848 12 C -0.540 4.540 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.890 5.890 16 Si 0.872 3.128 17 H -0.275 1.275 18 H -0.290 1.290 19 H -0.258 1.258 20 C 0.140 3.860 21 F -0.132 7.132 22 N -0.596 5.596 23 H 0.411 0.589 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.143 0.857 28 H 0.118 0.882 29 H 0.136 0.864 30 H 0.331 0.669 31 H 0.319 0.681 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 -8.263 6.531 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C -0.215 4.215 4 C -0.148 4.148 5 C 0.003 3.997 6 C -0.175 4.175 7 C -0.074 4.074 8 C -0.087 4.087 9 C 0.104 3.896 10 H 0.071 0.929 11 N -0.382 5.382 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.528 5.528 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.217 1.217 19 H -0.183 1.183 20 C 0.120 3.880 21 F -0.110 7.110 22 N -0.201 5.201 23 H 0.247 0.753 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.161 0.839 28 H 0.136 0.864 29 H 0.154 0.846 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.923 -8.244 7.085 17.664 hybrid contribution 1.091 0.301 -0.457 1.221 sum -12.832 -7.943 6.628 16.483 Atomic orbital electron populations 1.20404 0.87997 1.03401 1.02758 1.20159 0.93106 0.85902 1.05219 1.21320 0.90020 0.97737 1.12446 1.18982 0.92643 0.92869 1.10302 1.17843 0.84425 0.92950 1.04513 1.19932 0.89491 0.98684 1.09345 1.20532 0.96688 0.93157 0.97020 1.19834 0.94607 0.93661 1.00557 1.18300 0.85124 0.90611 0.95593 0.92892 1.59750 1.09481 1.11662 1.57296 1.21588 1.05711 1.37441 0.93227 0.90625 1.25019 0.97922 0.94596 0.95481 1.69899 1.24790 1.38477 1.19598 0.87018 0.81519 0.77909 0.83483 1.20133 1.21711 1.18310 1.16811 0.91633 0.76753 1.02823 1.91451 1.97158 1.28929 1.93484 1.41583 1.03923 1.07745 1.66836 0.75297 0.90817 0.89898 0.91652 0.83881 0.86413 0.84619 0.85656 0.86534 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.39 36.01 0.37 -0.34 16 2 C 0.06 0.81 7.08 -81.75 -0.58 0.23 16 3 C -0.19 -3.03 10.95 -37.67 -0.41 -3.44 16 4 C -0.14 -2.74 6.36 -105.09 -0.67 -3.41 16 5 C 0.11 1.81 7.27 -83.99 -0.61 1.20 16 6 C -0.15 -2.47 10.07 -39.43 -0.40 -2.87 16 7 C -0.05 -1.02 9.22 -39.55 -0.36 -1.38 16 8 C -0.08 -1.86 5.03 -104.55 -0.53 -2.39 16 9 C 0.21 5.23 2.18 -70.02 -0.15 5.08 16 10 H 0.05 1.39 6.99 -51.93 -0.36 1.03 16 11 N -0.85 -18.65 8.62 -6.65 -0.06 -18.71 16 12 C -0.54 -15.36 9.28 -34.44 -0.32 -15.68 16 13 H 0.08 2.39 7.98 -52.49 -0.42 1.97 16 14 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 15 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 16 Si 0.87 21.28 24.61 -169.99 -4.18 17.10 16 17 H -0.27 -6.34 7.01 56.52 0.40 -5.94 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 20 C 0.14 3.09 7.27 -39.14 -0.28 2.81 16 21 F -0.13 -3.09 16.65 2.25 0.04 -3.05 16 22 N -0.60 -7.65 6.07 -6.95 -0.04 -7.69 16 23 H 0.41 3.75 8.96 -40.82 -0.37 3.39 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 29 H 0.14 2.31 6.21 -52.49 -0.33 1.99 16 30 H 0.33 6.73 7.26 -39.29 -0.29 6.44 16 31 H 0.32 7.15 4.30 -39.29 -0.17 6.98 16 32 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 271.70 15.07 4.09 4.09 Total: -1.00 -32.71 271.70 -6.63 -39.34 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -3.21 Total: 13.50 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -4.04 Total: -18.19 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.67 Total: -52.80 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.18 Total: 17.10 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -32.71 -6.63 -39.34 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.339 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds