Wall clock time and date at job start Mon Mar 30 2020 06:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34211 * 125.04358 * 2 1 4 4 C 1.46499 * 106.99595 * 180.02562 * 3 2 1 5 5 C 1.40627 * 106.06819 * 0.02562 * 4 3 2 6 6 C 1.39125 * 119.44829 * 179.97438 * 5 4 3 7 7 C 1.37753 * 119.96334 * 0.02562 * 6 5 4 8 8 C 1.38793 * 120.69169 * 0.07060 * 7 6 5 9 9 C 1.50694 * 119.82352 * 179.97438 * 8 7 6 10 10 H 1.08993 * 109.47602 * 219.92497 * 9 8 7 11 11 N 1.46903 * 109.47156 * 339.92580 * 9 8 7 12 12 C 1.50700 * 109.47257 * 99.92123 * 9 8 7 13 13 H 1.08001 * 120.00025 * 0.02562 * 12 9 8 14 14 C 1.37881 * 120.00174 * 179.97438 * 12 9 8 15 15 N 1.31519 * 119.99868 * 180.02562 * 14 12 9 16 16 Si 1.86794 * 120.00056 * 0.02562 * 14 12 9 17 17 H 1.48509 * 109.47102 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47170 * 209.99688 * 16 14 12 19 19 H 1.48497 * 109.47022 * 330.00222 * 16 14 12 20 20 C 1.37869 * 120.35349 * 359.88693 * 8 7 6 21 21 F 1.35101 * 120.19187 * 180.02562 * 20 8 7 22 22 N 1.36886 * 125.03623 * 180.02562 * 2 1 3 23 23 H 0.96997 * 125.06617 * 359.97438 * 22 2 1 24 24 H 1.08994 * 109.47514 * 269.97123 * 1 2 3 25 25 H 1.09002 * 109.46826 * 29.97654 * 1 2 3 26 26 H 1.09007 * 109.47391 * 149.96857 * 1 2 3 27 27 H 1.07997 * 126.50134 * 0.03779 * 3 2 1 28 28 H 1.08001 * 120.01714 * 179.72253 * 6 5 4 29 29 H 1.08001 * 119.65426 * 179.97438 * 7 6 5 30 30 H 1.00902 * 110.99884 * 59.99879 * 11 9 8 31 31 H 1.00905 * 111.00143 * 183.95304 * 11 9 8 32 32 H 0.96998 * 119.99731 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2776 1.0988 0.0000 4 6 3.6705 0.6449 -0.0006 5 6 3.6220 -0.7605 -0.0016 6 6 4.8091 -1.4859 -0.0029 7 6 6.0185 -0.8263 -0.0027 8 6 6.0689 0.5607 0.0002 9 6 7.4027 1.2621 0.0010 10 1 7.3579 2.1273 0.6623 11 7 8.4419 0.3377 0.4738 12 6 7.7325 1.7156 -1.3978 13 1 7.0449 1.5162 -2.2064 14 6 8.9117 2.3860 -1.6452 15 7 9.1993 2.7822 -2.8658 16 14 10.1007 2.7316 -0.2466 17 1 11.0580 1.6032 -0.1205 18 1 10.8465 3.9842 -0.5290 19 1 9.3430 2.8817 1.0216 20 6 4.9053 1.3002 0.0007 21 9 4.9582 2.6501 0.0030 22 7 2.2929 -1.1208 -0.0005 23 1 1.9627 -2.0329 -0.0006 24 1 -0.3634 -0.0005 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3634 -0.8897 -0.5143 27 1 1.9358 2.1232 0.0006 28 1 4.7825 -2.5656 0.0009 29 1 6.9370 -1.3944 -0.0033 30 1 8.5032 -0.4734 -0.1233 31 1 9.3345 0.8028 0.5447 32 1 10.0287 3.2542 -3.0398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086180.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:48 Heat of formation + Delta-G solvation = -10.182123 kcal Electronic energy + Delta-G solvation = -17609.565920 eV Core-core repulsion = 14676.839643 eV Total energy + Delta-G solvation = -2932.726277 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.64798 -42.14391 -38.79681 -36.12579 -33.92315 -32.78861 -31.65611 -30.27516 -27.99584 -27.50231 -24.56073 -22.83817 -21.68800 -21.08543 -19.26344 -19.07557 -17.78388 -17.27845 -16.59223 -16.25609 -16.22274 -15.87478 -15.43048 -15.27095 -14.55601 -14.42661 -14.28691 -13.81063 -13.57416 -13.43548 -13.25052 -13.05029 -12.80323 -12.63290 -12.08651 -11.95324 -11.77857 -11.55570 -10.92198 -10.51678 -9.58010 -8.97837 -8.47962 -8.40084 -6.49483 0.08480 0.59672 1.21139 1.31392 1.41060 1.69724 2.14989 2.20485 2.81426 2.90915 3.49980 3.64510 3.92046 4.05088 4.21444 4.26984 4.36235 4.48863 4.56352 4.82227 4.82980 4.91002 5.08081 5.14309 5.26458 5.35103 5.44033 5.61371 5.70001 5.79889 6.00790 6.19103 6.35808 6.54182 6.69012 6.75045 7.16377 8.75697 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.039644 B = 0.006259 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.115873 B = 4472.142151 C = 4782.718776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.101 3.899 3 C -0.239 4.239 4 C -0.164 4.164 5 C 0.101 3.899 6 C -0.126 4.126 7 C -0.074 4.074 8 C -0.111 4.111 9 C 0.223 3.777 10 H 0.030 0.970 11 N -0.831 5.831 12 C -0.544 4.544 13 H 0.026 0.974 14 C 0.017 3.983 15 N -0.938 5.938 16 Si 0.940 3.060 17 H -0.244 1.244 18 H -0.290 1.290 19 H -0.254 1.254 20 C 0.095 3.905 21 F -0.156 7.156 22 N -0.576 5.576 23 H 0.434 0.566 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.146 0.854 28 H 0.165 0.835 29 H 0.151 0.849 30 H 0.342 0.658 31 H 0.318 0.682 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 -11.018 8.028 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 C -0.264 4.264 4 C -0.170 4.170 5 C -0.006 4.006 6 C -0.147 4.147 7 C -0.093 4.093 8 C -0.114 4.114 9 C 0.113 3.887 10 H 0.048 0.952 11 N -0.365 5.365 12 C -0.584 4.584 13 H 0.044 0.956 14 C -0.182 4.182 15 N -0.577 5.577 16 Si 0.765 3.235 17 H -0.168 1.168 18 H -0.217 1.217 19 H -0.179 1.179 20 C 0.075 3.925 21 F -0.135 7.135 22 N -0.182 5.182 23 H 0.275 0.725 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.163 0.837 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.578 -11.058 8.586 20.945 hybrid contribution 1.353 1.083 -0.988 1.995 sum -14.225 -9.975 7.598 18.963 Atomic orbital electron populations 1.20621 0.83868 1.05254 1.04664 1.20849 0.95201 0.84577 1.00165 1.21541 0.89164 0.99365 1.16300 1.19359 0.92995 0.94547 1.10087 1.18005 0.86279 0.91961 1.04373 1.20326 0.88103 1.00761 1.05471 1.20700 0.98643 0.91667 0.98332 1.19820 0.93258 0.95387 1.02927 1.17974 0.87496 0.90823 0.92414 0.95229 1.59661 1.08720 1.11205 1.56918 1.21757 1.04863 1.37657 0.94126 0.95607 1.25921 0.99930 0.94135 0.98250 1.70052 1.25798 1.39774 1.22095 0.85923 0.79268 0.78650 0.79694 1.16836 1.21667 1.17885 1.17258 0.93343 0.76071 1.05866 1.91365 1.97364 1.30658 1.94086 1.41616 1.02391 1.09156 1.65036 0.72527 0.88671 0.88923 0.88966 0.83665 0.81765 0.83189 0.84400 0.86654 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.99 10.39 71.24 0.74 -0.25 16 2 C 0.10 2.26 7.08 40.85 0.29 2.55 16 3 C -0.24 -7.53 10.95 23.51 0.26 -7.27 16 4 C -0.16 -6.40 6.36 -20.17 -0.13 -6.52 16 5 C 0.10 3.16 7.27 39.02 0.28 3.45 16 6 C -0.13 -3.73 10.07 22.37 0.23 -3.50 16 7 C -0.07 -2.72 9.22 22.29 0.21 -2.51 16 8 C -0.11 -5.13 5.03 -19.82 -0.10 -5.23 16 9 C 0.22 11.36 2.18 43.42 0.09 11.45 16 10 H 0.03 1.63 6.99 -2.39 -0.02 1.62 16 11 N -0.83 -36.19 8.62 -174.96 -1.51 -37.70 16 12 C -0.54 -32.63 9.28 25.60 0.24 -32.39 16 13 H 0.03 1.75 7.98 -2.91 -0.02 1.72 16 14 C 0.02 0.99 5.47 84.65 0.46 1.45 16 15 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 16 Si 0.94 44.61 24.61 68.60 1.69 46.30 16 17 H -0.24 -10.33 7.01 99.48 0.70 -9.63 16 18 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 19 H -0.25 -11.84 6.54 99.48 0.65 -11.19 16 20 C 0.09 4.42 7.27 22.56 0.16 4.59 16 21 F -0.16 -7.96 16.65 44.97 0.75 -7.21 16 22 N -0.58 -12.54 6.07 -175.91 -1.07 -13.61 16 23 H 0.43 5.61 8.96 -92.71 -0.83 4.78 16 24 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 28 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 29 H 0.15 4.90 6.21 -2.91 -0.02 4.88 16 30 H 0.34 13.64 7.26 -89.69 -0.65 12.99 16 31 H 0.32 13.83 4.30 -89.69 -0.39 13.44 16 32 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -77.11 271.70 2.15 -74.96 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.75 Total: 30.66 kcal Atomic # 6 Polarization: -36.92 SS G_CDS: 2.73 Total: -34.19 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -2.28 Total: -110.52 kcal Atomic # 9 Polarization: -7.96 SS G_CDS: 0.75 Total: -7.21 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.69 Total: 46.30 kcal Total: -77.11 2.15 -74.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086180.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.782 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds