Wall clock time and date at job start Mon Mar 30 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34211 * 125.04080 * 2 1 4 4 C 1.46507 * 106.98967 * 180.02562 * 3 2 1 5 5 C 1.40623 * 106.07348 * 359.97438 * 4 3 2 6 6 C 1.39122 * 119.44733 * 180.02562 * 5 4 3 7 7 C 1.37747 * 119.96532 * 0.02562 * 6 5 4 8 8 C 1.38793 * 120.69204 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.82483 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.47006 * 144.99774 * 9 8 7 11 11 N 1.46908 * 109.46722 * 25.00285 * 9 8 7 12 12 C 1.50692 * 109.47288 * 265.00314 * 9 8 7 13 13 H 1.08007 * 120.00052 * 5.29044 * 12 9 8 14 14 C 1.37868 * 120.00150 * 185.29321 * 12 9 8 15 15 N 1.31520 * 120.00338 * 8.95254 * 14 12 9 16 16 Si 1.86801 * 120.00344 * 188.95245 * 14 12 9 17 17 H 1.48505 * 109.46997 * 84.98907 * 16 14 12 18 18 H 1.48499 * 109.47454 * 204.99219 * 16 14 12 19 19 H 1.48498 * 109.47078 * 324.99248 * 16 14 12 20 20 C 1.37872 * 120.35353 * 0.02562 * 8 7 6 21 21 F 1.35104 * 120.19562 * 180.02562 * 20 8 7 22 22 N 1.36885 * 125.03900 * 180.02562 * 2 1 3 23 23 H 0.96997 * 125.06584 * 359.97157 * 22 2 1 24 24 H 1.09000 * 109.47385 * 269.97624 * 1 2 3 25 25 H 1.09007 * 109.47366 * 29.97174 * 1 2 3 26 26 H 1.09006 * 109.47403 * 149.97323 * 1 2 3 27 27 H 1.07997 * 126.50605 * 0.02562 * 3 2 1 28 28 H 1.07998 * 120.01954 * 180.02562 * 6 5 4 29 29 H 1.08004 * 119.65653 * 180.28082 * 7 6 5 30 30 H 1.00898 * 110.99517 * 172.48386 * 11 9 8 31 31 H 1.00896 * 110.99566 * 296.43796 * 11 9 8 32 32 H 0.96997 * 120.00333 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2775 1.0988 0.0000 4 6 3.6705 0.6449 -0.0006 5 6 3.6220 -0.7605 -0.0004 6 6 4.8091 -1.4859 -0.0003 7 6 6.0184 -0.8263 0.0000 8 6 6.0688 0.5607 -0.0002 9 6 7.4027 1.2623 -0.0004 10 1 7.3323 2.1763 -0.5901 11 7 8.4203 0.3791 -0.5857 12 6 7.7897 1.6059 1.4148 13 1 7.1787 1.2682 2.2390 14 6 8.9238 2.3513 1.6577 15 7 9.5697 2.9108 0.6579 16 14 9.5431 2.5669 3.4068 17 1 10.3972 1.4093 3.7757 18 1 10.3377 3.8179 3.5000 19 1 8.3868 2.6446 4.3353 20 6 4.9052 1.3002 -0.0003 21 9 4.9580 2.6502 -0.0010 22 7 2.2929 -1.1208 -0.0005 23 1 1.9628 -2.0328 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8898 -0.5143 27 1 1.9357 2.1233 0.0004 28 1 4.7826 -2.5655 -0.0005 29 1 6.9370 -1.3944 -0.0045 30 1 9.2944 0.8673 -0.7101 31 1 8.5457 -0.4498 -0.0243 32 1 10.3678 3.4349 0.8287 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261086181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:50 Heat of formation + Delta-G solvation = -19.423118 kcal Electronic energy + Delta-G solvation = -17549.935130 eV Core-core repulsion = 14616.808133 eV Total energy + Delta-G solvation = -2933.126996 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.60326 -42.11429 -38.61841 -35.97797 -33.48249 -32.72038 -31.55047 -30.10147 -27.82995 -27.40301 -24.59214 -22.81232 -21.65874 -21.07482 -19.10394 -18.64535 -17.50032 -17.15407 -16.49900 -16.27352 -16.18232 -15.74072 -15.41267 -14.82455 -14.60144 -14.33422 -14.07228 -13.63555 -13.46325 -13.28641 -13.08402 -13.03062 -12.89237 -12.57298 -12.18593 -12.03131 -11.70030 -11.45025 -10.68130 -10.48920 -9.32778 -8.98150 -8.48176 -8.12177 -6.37601 0.11650 0.64760 1.36101 1.37201 1.47611 1.71497 2.16916 2.36044 2.87718 3.03213 3.55071 3.71990 4.08045 4.12824 4.29634 4.36940 4.48095 4.55836 4.71425 4.82631 4.92988 5.01044 5.14716 5.22096 5.33125 5.52981 5.63658 5.68475 5.76524 5.88292 6.02721 6.24223 6.65274 6.77060 6.78154 7.07401 7.34652 8.82618 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.006122 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.380962 B = 4572.541771 C = 4810.846618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.101 3.899 3 C -0.240 4.240 4 C -0.163 4.163 5 C 0.099 3.901 6 C -0.127 4.127 7 C -0.074 4.074 8 C -0.111 4.111 9 C 0.252 3.748 10 H 0.006 0.994 11 N -0.833 5.833 12 C -0.558 4.558 13 H 0.042 0.958 14 C 0.024 3.976 15 N -0.914 5.914 16 Si 0.959 3.041 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.088 3.912 21 F -0.158 7.158 22 N -0.576 5.576 23 H 0.433 0.567 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.145 0.855 28 H 0.163 0.837 29 H 0.145 0.855 30 H 0.337 0.663 31 H 0.326 0.674 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 -10.850 -0.618 19.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.008 4.008 3 C -0.265 4.265 4 C -0.168 4.168 5 C -0.009 4.009 6 C -0.147 4.147 7 C -0.093 4.093 8 C -0.113 4.113 9 C 0.141 3.859 10 H 0.024 0.976 11 N -0.360 5.360 12 C -0.598 4.598 13 H 0.061 0.939 14 C -0.177 4.177 15 N -0.553 5.553 16 Si 0.784 3.216 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.203 1.203 20 C 0.068 3.932 21 F -0.137 7.137 22 N -0.182 5.182 23 H 0.274 0.726 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.163 0.837 28 H 0.181 0.819 29 H 0.162 0.838 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.542 -10.847 -1.317 19.825 hybrid contribution 1.337 1.003 1.672 2.364 sum -15.205 -9.844 0.355 18.117 Atomic orbital electron populations 1.20617 0.83863 1.05328 1.04559 1.20839 0.95178 0.84572 1.00211 1.21534 0.89172 0.99327 1.16439 1.19359 0.92955 0.94521 1.09981 1.17966 0.86224 0.91953 1.04717 1.20308 0.88159 1.00641 1.05612 1.20654 0.98362 0.91806 0.98511 1.20183 0.94174 0.95418 1.01572 1.17505 0.86061 0.89957 0.92349 0.97640 1.59446 1.13153 1.09918 1.53526 1.21895 1.09500 1.35024 0.93351 0.93949 1.25763 0.96932 0.93781 1.01218 1.70022 1.19287 1.33178 1.32806 0.85563 0.78173 0.77927 0.79913 1.18980 1.20668 1.20287 1.17294 0.93377 0.76014 1.06498 1.91357 1.97369 1.30825 1.94177 1.41599 1.02371 1.09117 1.65156 0.72579 0.88937 0.88793 0.88861 0.83718 0.81947 0.83758 0.85116 0.86303 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.39 71.23 0.74 -0.27 16 2 C 0.10 2.30 7.08 40.85 0.29 2.59 16 3 C -0.24 -7.69 10.95 23.51 0.26 -7.43 16 4 C -0.16 -6.47 6.36 -20.17 -0.13 -6.60 16 5 C 0.10 3.16 7.27 39.02 0.28 3.45 16 6 C -0.13 -3.90 10.07 22.37 0.23 -3.68 16 7 C -0.07 -2.85 9.25 22.29 0.21 -2.64 16 8 C -0.11 -5.33 5.00 -19.82 -0.10 -5.43 16 9 C 0.25 13.75 2.56 43.42 0.11 13.86 16 10 H 0.01 0.36 7.73 -2.39 -0.02 0.34 16 11 N -0.83 -40.56 8.70 -174.94 -1.52 -42.08 16 12 C -0.56 -32.30 8.63 25.60 0.22 -32.08 16 13 H 0.04 2.50 7.76 -2.91 -0.02 2.48 16 14 C 0.02 1.35 5.33 84.65 0.45 1.80 16 15 N -0.91 -53.54 12.30 21.44 0.26 -53.28 16 16 Si 0.96 44.68 29.55 68.60 2.03 46.70 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 C 0.09 4.25 7.28 22.56 0.16 4.41 16 21 F -0.16 -8.38 16.56 44.97 0.74 -7.63 16 22 N -0.58 -12.88 6.07 -175.92 -1.07 -13.95 16 23 H 0.43 5.83 8.96 -92.71 -0.83 5.00 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.14 5.10 6.34 -2.91 -0.02 5.08 16 30 H 0.34 17.46 7.95 -89.70 -0.71 16.75 16 31 H 0.33 14.35 7.35 -89.70 -0.66 13.69 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -72.19 279.61 2.15 -70.04 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -1.02 Total: 32.20 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 2.72 Total: -32.01 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -2.33 Total: -109.30 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.74 Total: -7.63 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.19 2.15 -70.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261086181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.618 kcal (2) G-P(sol) polarization free energy of solvation -72.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds