Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47297 * 94.92653 * 3 2 1 5 5 H 1.48507 * 109.47336 * 214.92633 * 3 2 1 6 6 H 1.48503 * 109.47234 * 334.92402 * 3 2 1 7 7 C 1.37882 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99744 * 7.64876 * 7 2 1 9 9 C 1.50701 * 119.99953 * 187.65112 * 7 2 1 10 10 H 1.09000 * 109.46954 * 359.46755 * 9 7 2 11 11 C 1.53004 * 109.47001 * 239.47037 * 9 7 2 12 12 N 1.46894 * 109.47200 * 65.44584 * 11 9 7 13 13 C 1.50698 * 109.47227 * 119.46973 * 9 7 2 14 14 C 1.34213 * 125.03834 * 265.00207 * 13 9 7 15 15 C 1.46505 * 106.99269 * 180.02562 * 14 13 9 16 16 C 1.40633 * 106.07061 * 359.97438 * 15 14 13 17 17 C 1.39117 * 119.44876 * 180.02562 * 16 15 14 18 18 C 1.37751 * 119.96505 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.69207 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.35208 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.19453 * 179.97438 * 20 19 18 22 22 N 1.36882 * 125.04168 * 84.69259 * 13 9 7 23 23 H 0.97001 * 125.06579 * 0.02562 * 22 13 9 24 24 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46722 * 185.44407 * 11 9 7 26 26 H 1.09004 * 109.46678 * 305.44587 * 11 9 7 27 27 H 1.00906 * 111.00317 * 65.28479 * 12 11 9 28 28 H 1.00895 * 111.00005 * 189.24293 * 12 11 9 29 29 H 1.07994 * 126.50914 * 359.97438 * 14 13 9 30 30 H 1.07994 * 120.01975 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.65874 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.81930 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6008 1.9862 1.3949 5 1 3.4908 1.4724 -0.8016 6 1 1.3985 2.6804 -0.5934 7 6 2.0045 -1.1941 -0.0005 8 1 1.4717 -2.1251 -0.1254 9 6 3.5015 -1.2001 0.1732 10 1 3.8595 -0.1755 0.2745 11 6 4.1541 -1.8499 -1.0485 12 7 3.9131 -1.0165 -2.2339 13 6 3.8605 -1.9823 1.4102 14 6 4.0712 -1.4503 2.6243 15 6 4.3925 -2.5582 3.5274 16 6 4.3461 -3.7252 2.7438 17 6 4.6110 -4.9565 3.3345 18 6 4.9150 -5.0249 4.6763 19 6 4.9614 -3.8746 5.4516 20 6 4.7024 -2.6434 4.8878 21 9 4.7480 -1.5259 5.6455 22 7 4.0143 -3.3414 1.4636 23 1 3.9088 -3.9442 0.7109 24 1 -0.4850 0.8401 0.0004 25 1 5.2273 -1.9420 -0.8812 26 1 3.7247 -2.8393 -1.2066 27 1 4.3750 -0.1235 -2.1481 28 1 4.2006 -1.4929 -3.0755 29 1 4.0153 -0.4040 2.8857 30 1 4.5783 -5.8584 2.7413 31 1 5.1202 -5.9834 5.1296 32 1 5.2009 -3.9445 6.5024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261090597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = 5.404414 kcal Electronic energy + Delta-G solvation = -17528.181969 eV Core-core repulsion = 14596.131575 eV Total energy + Delta-G solvation = -2932.050394 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.42983 -40.78925 -36.86362 -34.92313 -32.34396 -31.27641 -30.21987 -28.77362 -27.17829 -24.33885 -22.26057 -21.94238 -20.47361 -19.39383 -17.86595 -17.24265 -16.09833 -15.59387 -15.24320 -15.05814 -14.93666 -14.60700 -13.77474 -13.70041 -13.52736 -13.21023 -12.76854 -12.50793 -12.37047 -11.77347 -11.29425 -11.26412 -11.16567 -10.91814 -10.64153 -10.24461 -9.80491 -9.42021 -9.10561 -8.57750 -7.93481 -7.81340 -7.09828 -6.11789 -4.09780 1.34447 1.80981 3.26494 3.34349 3.36042 3.38082 3.59154 4.05612 4.40285 4.65483 4.95879 5.07217 5.21892 5.31432 5.41057 5.63696 5.64189 5.80967 5.94879 6.05640 6.22165 6.35989 6.39962 6.46616 6.58245 6.71890 6.73172 7.13833 7.30270 7.50243 7.62079 7.85379 8.02389 8.05729 8.39538 8.88673 9.50019 11.01065 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025594 B = 0.007178 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.761511 B = 3899.900984 C = 4416.632057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.083 3.917 3 Si 0.882 3.118 4 H -0.279 1.279 5 H -0.263 1.263 6 H -0.290 1.290 7 C -0.485 4.485 8 H 0.072 0.928 9 C 0.063 3.937 10 H 0.062 0.938 11 C 0.075 3.925 12 N -0.828 5.828 13 C 0.151 3.849 14 C -0.230 4.230 15 C -0.128 4.128 16 C 0.112 3.888 17 C -0.137 4.137 18 C -0.092 4.092 19 C -0.190 4.190 20 C 0.133 3.867 21 F -0.143 7.143 22 N -0.585 5.585 23 H 0.414 0.586 24 H 0.265 0.735 25 H -0.001 1.001 26 H 0.058 0.942 27 H 0.332 0.668 28 H 0.327 0.673 29 H 0.140 0.860 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.275 -7.048 3.878 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.120 4.120 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.216 1.216 7 C -0.522 4.522 8 H 0.090 0.910 9 C 0.043 3.957 10 H 0.080 0.920 11 C -0.057 4.057 12 N -0.356 5.356 13 C 0.042 3.958 14 C -0.253 4.253 15 C -0.134 4.134 16 C 0.003 3.997 17 C -0.158 4.158 18 C -0.112 4.112 19 C -0.210 4.210 20 C 0.113 3.887 21 F -0.121 7.121 22 N -0.187 5.187 23 H 0.251 0.749 24 H 0.075 0.925 25 H 0.017 0.983 26 H 0.076 0.924 27 H 0.145 0.855 28 H 0.138 0.862 29 H 0.158 0.842 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.287 -6.960 3.982 13.043 hybrid contribution 1.180 0.747 -0.265 1.422 sum 11.467 -6.213 3.718 13.561 Atomic orbital electron populations 1.69895 1.06440 1.27184 1.49367 1.24980 0.94605 0.98922 0.93536 0.86804 0.80268 0.83548 0.78315 1.20505 1.18795 1.21642 1.20441 0.87419 0.94929 1.49454 0.91022 1.18196 0.98300 0.94070 0.85178 0.91976 1.21903 0.94402 0.96892 0.92476 1.58373 1.67176 1.06581 1.03453 1.21506 0.94023 0.81519 0.98776 1.21175 1.15371 0.97662 0.91103 1.19157 1.07268 0.94923 0.92068 1.17985 1.02368 0.94067 0.85279 1.19972 1.06295 0.94310 0.95255 1.20406 1.00714 0.97483 0.92578 1.20682 1.08720 0.90979 1.00607 1.17080 1.02098 0.82359 0.87155 1.91439 1.93951 1.51240 1.75505 1.41884 1.60951 1.07591 1.08288 0.74933 0.92510 0.98268 0.92375 0.85531 0.86184 0.84203 0.86199 0.85465 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 2 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 3 Si 0.88 21.02 26.96 -169.99 -4.58 16.44 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.26 -5.73 6.29 56.52 0.36 -5.37 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.49 -12.86 8.57 -34.44 -0.30 -13.15 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 9 C 0.06 1.36 2.31 -92.92 -0.21 1.15 16 10 H 0.06 1.38 4.77 -51.93 -0.25 1.14 16 11 C 0.07 1.36 5.77 -3.83 -0.02 1.34 16 12 N -0.83 -14.71 9.31 -10.37 -0.10 -14.81 16 13 C 0.15 3.12 5.79 -81.76 -0.47 2.65 16 14 C -0.23 -4.86 10.95 -37.67 -0.41 -5.28 16 15 C -0.13 -2.49 6.36 -105.08 -0.67 -3.16 16 16 C 0.11 1.95 7.27 -84.00 -0.61 1.34 16 17 C -0.14 -1.94 10.07 -39.43 -0.40 -2.34 16 18 C -0.09 -1.20 10.01 -39.55 -0.40 -1.59 16 19 C -0.19 -2.74 10.01 -39.51 -0.40 -3.14 16 20 C 0.13 2.36 7.34 -39.14 -0.29 2.07 16 21 F -0.14 -2.59 17.28 2.25 0.04 -2.55 16 22 N -0.58 -10.35 5.84 -6.95 -0.04 -10.39 16 23 H 0.41 6.22 8.21 -40.82 -0.34 5.89 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 26 H 0.06 1.03 7.60 -51.93 -0.39 0.63 16 27 H 0.33 5.66 8.57 -39.29 -0.34 5.32 16 28 H 0.33 4.72 9.08 -39.29 -0.36 4.37 16 29 H 0.14 2.94 8.06 -52.49 -0.42 2.52 16 30 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 278.73 15.07 4.20 4.20 Total: -1.00 -30.78 278.73 -7.36 -38.14 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -3.39 Total: 12.87 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -4.27 Total: -17.91 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: 0.64 Total: -51.19 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.58 Total: 16.44 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.78 -7.36 -38.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.546 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds