Wall clock time and date at job start Mon Mar 30 2020 06:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47297 * 94.92653 * 3 2 1 5 5 H 1.48507 * 109.47336 * 214.92633 * 3 2 1 6 6 H 1.48503 * 109.47234 * 334.92402 * 3 2 1 7 7 C 1.37882 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99744 * 7.64876 * 7 2 1 9 9 C 1.50701 * 119.99953 * 187.65112 * 7 2 1 10 10 H 1.09000 * 109.46954 * 359.46755 * 9 7 2 11 11 C 1.53004 * 109.47001 * 239.47037 * 9 7 2 12 12 N 1.46894 * 109.47200 * 65.44584 * 11 9 7 13 13 C 1.50698 * 109.47227 * 119.46973 * 9 7 2 14 14 C 1.34213 * 125.03834 * 265.00207 * 13 9 7 15 15 C 1.46505 * 106.99269 * 180.02562 * 14 13 9 16 16 C 1.40633 * 106.07061 * 359.97438 * 15 14 13 17 17 C 1.39117 * 119.44876 * 180.02562 * 16 15 14 18 18 C 1.37751 * 119.96505 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.69207 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.35208 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.19453 * 179.97438 * 20 19 18 22 22 N 1.36882 * 125.04168 * 84.69259 * 13 9 7 23 23 H 0.97001 * 125.06579 * 0.02562 * 22 13 9 24 24 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46722 * 185.44407 * 11 9 7 26 26 H 1.09004 * 109.46678 * 305.44587 * 11 9 7 27 27 H 1.00906 * 111.00317 * 65.28479 * 12 11 9 28 28 H 1.00895 * 111.00005 * 189.24293 * 12 11 9 29 29 H 1.07994 * 126.50914 * 359.97438 * 14 13 9 30 30 H 1.07994 * 120.01975 * 180.02562 * 17 16 15 31 31 H 1.08002 * 119.65874 * 180.02562 * 18 17 16 32 32 H 1.07999 * 119.81930 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6008 1.9862 1.3949 5 1 3.4908 1.4724 -0.8016 6 1 1.3985 2.6804 -0.5934 7 6 2.0045 -1.1941 -0.0005 8 1 1.4717 -2.1251 -0.1254 9 6 3.5015 -1.2001 0.1732 10 1 3.8595 -0.1755 0.2745 11 6 4.1541 -1.8499 -1.0485 12 7 3.9131 -1.0165 -2.2339 13 6 3.8605 -1.9823 1.4102 14 6 4.0712 -1.4503 2.6243 15 6 4.3925 -2.5582 3.5274 16 6 4.3461 -3.7252 2.7438 17 6 4.6110 -4.9565 3.3345 18 6 4.9150 -5.0249 4.6763 19 6 4.9614 -3.8746 5.4516 20 6 4.7024 -2.6434 4.8878 21 9 4.7480 -1.5259 5.6455 22 7 4.0143 -3.3414 1.4636 23 1 3.9088 -3.9442 0.7109 24 1 -0.4850 0.8401 0.0004 25 1 5.2273 -1.9420 -0.8812 26 1 3.7247 -2.8393 -1.2066 27 1 4.3750 -0.1235 -2.1481 28 1 4.2006 -1.4929 -3.0755 29 1 4.0153 -0.4040 2.8857 30 1 4.5783 -5.8584 2.7413 31 1 5.1202 -5.9834 5.1296 32 1 5.2009 -3.9445 6.5024 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090597.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:59 Heat of formation + Delta-G solvation = -16.380689 kcal Electronic energy + Delta-G solvation = -17529.126641 eV Core-core repulsion = 14596.131575 eV Total energy + Delta-G solvation = -2932.995067 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.77110 -42.17224 -38.21187 -36.42837 -34.29222 -32.67205 -31.75915 -30.07125 -28.68680 -26.16670 -23.60113 -23.24966 -21.94555 -20.95852 -19.26276 -19.19829 -17.47542 -16.81435 -16.64082 -16.54782 -16.35187 -16.14293 -15.34729 -15.15327 -15.04708 -14.78405 -14.30164 -14.10666 -13.80808 -13.32166 -12.92832 -12.61198 -12.50782 -12.42230 -12.16554 -11.95469 -11.74953 -11.25084 -10.67620 -10.50867 -9.31542 -9.13140 -8.51671 -8.25008 -6.25450 0.07475 0.58870 1.38338 1.39237 1.48609 1.79683 2.23129 2.39713 2.81018 3.15233 3.40722 3.64118 3.92114 4.08787 4.23054 4.23347 4.35544 4.43445 4.51088 4.70461 4.80749 4.90164 5.01852 5.12608 5.22182 5.36176 5.49171 5.56333 5.73928 5.90246 6.19754 6.25887 6.46061 6.67261 6.77088 6.84003 7.37950 8.91798 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.025594 B = 0.007178 C = 0.006338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.761511 B = 3899.900984 C = 4416.632057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.022 3.978 3 Si 0.938 3.062 4 H -0.282 1.282 5 H -0.229 1.229 6 H -0.295 1.295 7 C -0.474 4.474 8 H 0.030 0.970 9 C 0.064 3.936 10 H 0.057 0.943 11 C 0.084 3.916 12 N -0.846 5.846 13 C 0.136 3.864 14 C -0.257 4.257 15 C -0.164 4.164 16 C 0.103 3.897 17 C -0.133 4.133 18 C -0.075 4.075 19 C -0.176 4.176 20 C 0.100 3.900 21 F -0.154 7.154 22 N -0.578 5.578 23 H 0.425 0.575 24 H 0.263 0.737 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.338 0.662 28 H 0.347 0.653 29 H 0.125 0.875 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.771 -9.216 4.515 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.208 1.208 5 H -0.152 1.152 6 H -0.222 1.222 7 C -0.512 4.512 8 H 0.049 0.951 9 C 0.044 3.956 10 H 0.075 0.925 11 C -0.048 4.048 12 N -0.377 5.377 13 C 0.026 3.974 14 C -0.281 4.281 15 C -0.169 4.169 16 C -0.005 4.005 17 C -0.153 4.153 18 C -0.094 4.094 19 C -0.196 4.196 20 C 0.081 3.919 21 F -0.133 7.133 22 N -0.182 5.182 23 H 0.264 0.736 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.174 0.826 31 H 0.194 0.806 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 12.827 -9.164 4.596 16.421 hybrid contribution 0.458 1.211 -0.324 1.335 sum 13.285 -7.954 4.272 16.063 Atomic orbital electron populations 1.70050 1.08359 1.27809 1.52677 1.25796 0.95213 1.02677 0.93838 0.85900 0.80207 0.79010 0.78520 1.20842 1.15162 1.22151 1.20605 0.89982 0.92973 1.47638 0.95137 1.18102 0.95299 0.94765 0.87432 0.92482 1.21691 0.95545 0.96596 0.90930 1.58309 1.67936 1.07209 1.04215 1.21092 0.95499 0.82984 0.97823 1.21284 1.16498 0.97885 0.92394 1.19375 1.09219 0.95089 0.93257 1.18395 1.02579 0.94875 0.84670 1.20493 1.04587 0.94060 0.96175 1.21032 0.97716 0.98849 0.91838 1.21163 1.06199 0.89940 1.02257 1.17495 1.04137 0.83417 0.86871 1.91402 1.94255 1.52095 1.75564 1.41734 1.60776 1.06575 1.09104 0.73604 0.92835 0.95554 0.92029 0.84948 0.83927 0.85673 0.82615 0.80592 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 2 C 0.02 1.27 5.47 84.66 0.46 1.73 16 3 Si 0.94 44.19 26.96 68.60 1.85 46.04 16 4 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 5 H -0.23 -9.35 6.29 99.48 0.63 -8.72 16 6 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 7 C -0.47 -25.90 8.57 25.60 0.22 -25.68 16 8 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 9 C 0.06 2.79 2.31 -12.29 -0.03 2.76 16 10 H 0.06 2.52 4.77 -2.39 -0.01 2.51 16 11 C 0.08 2.93 5.77 86.31 0.50 3.43 16 12 N -0.85 -28.55 9.31 -186.72 -1.74 -30.29 16 13 C 0.14 5.68 5.79 40.85 0.24 5.91 16 14 C -0.26 -11.18 10.95 23.51 0.26 -10.92 16 15 C -0.16 -6.35 6.36 -20.16 -0.13 -6.48 16 16 C 0.10 3.41 7.27 39.02 0.28 3.70 16 17 C -0.13 -3.18 10.07 22.37 0.23 -2.96 16 18 C -0.08 -1.55 10.01 22.29 0.22 -1.33 16 19 C -0.18 -4.44 10.01 22.32 0.22 -4.21 16 20 C 0.10 3.46 7.34 22.56 0.17 3.63 16 21 F -0.15 -5.63 17.28 44.97 0.78 -4.86 16 22 N -0.58 -19.95 5.84 -175.91 -1.03 -20.98 16 23 H 0.42 12.18 8.21 -92.71 -0.76 11.42 16 24 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 2.10 7.60 -2.39 -0.02 2.08 16 27 H 0.34 10.72 8.57 -89.69 -0.77 9.96 16 28 H 0.35 9.25 9.08 -89.70 -0.81 8.44 16 29 H 0.13 5.58 8.06 -2.91 -0.02 5.56 16 30 H 0.16 2.64 8.06 -2.91 -0.02 2.61 16 31 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -70.93 278.73 1.56 -69.37 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -1.24 Total: 30.37 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 2.64 Total: -30.41 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -2.47 Total: -110.51 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.78 Total: -4.86 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.85 Total: 46.04 kcal Total: -70.93 1.56 -69.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090597.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.989 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds