Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48503 * 109.47287 * 264.85880 * 3 2 1 5 5 H 1.48499 * 109.46887 * 24.86157 * 3 2 1 6 6 H 1.48500 * 109.46993 * 144.86119 * 3 2 1 7 7 C 1.37879 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 4.81181 * 7 2 1 9 9 C 1.50700 * 119.99769 * 184.80684 * 7 2 1 10 10 H 1.08999 * 109.47413 * 335.01512 * 9 7 2 11 11 C 1.52995 * 109.47000 * 95.01924 * 9 7 2 12 12 N 1.46903 * 109.47031 * 185.49280 * 11 9 7 13 13 C 1.50703 * 109.46812 * 215.01822 * 9 7 2 14 14 C 1.34214 * 125.03986 * 274.69895 * 13 9 7 15 15 C 1.46510 * 106.99302 * 179.86090 * 14 13 9 16 16 C 1.40627 * 106.06873 * 0.39320 * 15 14 13 17 17 C 1.39119 * 119.44734 * 179.74483 * 16 15 14 18 18 C 1.37748 * 119.96370 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.69155 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.35370 * 359.95561 * 19 18 17 21 21 F 1.35101 * 120.19578 * 180.02562 * 20 19 18 22 22 N 1.36887 * 125.04316 * 95.00403 * 13 9 7 23 23 H 0.97001 * 125.05956 * 359.97438 * 22 13 9 24 24 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47258 * 65.49642 * 11 9 7 26 26 H 1.08998 * 109.47438 * 305.49537 * 11 9 7 27 27 H 1.00900 * 110.99492 * 179.97438 * 12 11 9 28 28 H 1.00892 * 111.00551 * 303.95421 * 12 11 9 29 29 H 1.07997 * 126.50396 * 359.97438 * 14 13 9 30 30 H 1.07997 * 120.02450 * 179.97438 * 17 16 15 31 31 H 1.08007 * 119.65709 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.82230 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3965 2.6815 0.5886 6 1 3.4882 1.4739 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0794 9 6 3.5075 -1.1964 0.1088 10 1 3.9000 -0.2480 -0.2579 11 6 3.9121 -1.3841 1.5723 12 7 5.3700 -1.2552 1.6978 13 6 4.0694 -2.3253 -0.7165 14 6 4.2093 -3.5920 -0.2957 15 6 4.7864 -4.3514 -1.4077 16 6 4.9638 -3.4316 -2.4566 17 6 5.5077 -3.8647 -3.6616 18 6 5.8677 -5.1850 -3.8187 19 6 5.6936 -6.0947 -2.7850 20 6 5.1569 -5.6879 -1.5820 21 9 4.9893 -6.5759 -0.5777 22 7 4.5184 -2.2095 -2.0044 23 1 4.5219 -1.3889 -2.5217 24 1 -0.4850 0.8401 0.0004 25 1 3.6045 -2.3737 1.9103 26 1 3.4261 -0.6240 2.1840 27 1 5.6624 -1.3749 2.6560 28 1 5.8443 -1.9067 1.0907 29 1 3.9446 -3.9787 0.6774 30 1 5.6476 -3.1664 -4.4734 31 1 6.2891 -5.5161 -4.7565 32 1 5.9804 -7.1267 -2.9236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261090598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = 0.635556 kcal Electronic energy + Delta-G solvation = -17574.372928 eV Core-core repulsion = 14642.115741 eV Total energy + Delta-G solvation = -2932.257187 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.48889 -40.86339 -36.94057 -34.99439 -32.55949 -31.22721 -30.15767 -28.84510 -27.37558 -23.84291 -22.72497 -21.79037 -20.99960 -19.11276 -17.80358 -17.18243 -16.31453 -15.61074 -15.34472 -15.20433 -14.97797 -14.41682 -14.18630 -13.70671 -13.51966 -13.04527 -12.85970 -12.64477 -12.42783 -11.66005 -11.36201 -11.23203 -11.10591 -10.91861 -10.76861 -10.19803 -9.98651 -9.51954 -9.19058 -8.76170 -8.09172 -7.87126 -7.16366 -6.26991 -4.31052 1.29296 1.76181 3.14990 3.25982 3.28012 3.33048 3.52058 4.00243 4.24946 4.60130 4.93476 5.00930 5.11398 5.35291 5.37449 5.52288 5.58978 5.85054 6.04296 6.18643 6.25441 6.32741 6.33968 6.52299 6.60486 6.74712 6.86802 7.07188 7.29717 7.40547 7.56351 7.73923 7.94106 7.99197 8.31625 8.80010 9.31633 10.84694 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.006669 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.291417 B = 4197.395606 C = 4439.600877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.868 3.132 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.069 3.931 10 H 0.052 0.948 11 C 0.072 3.928 12 N -0.859 5.859 13 C 0.158 3.842 14 C -0.231 4.231 15 C -0.130 4.130 16 C 0.113 3.887 17 C -0.136 4.136 18 C -0.091 4.091 19 C -0.189 4.189 20 C 0.133 3.867 21 F -0.143 7.143 22 N -0.585 5.585 23 H 0.415 0.585 24 H 0.268 0.732 25 H 0.027 0.973 26 H 0.072 0.928 27 H 0.328 0.672 28 H 0.334 0.666 29 H 0.141 0.859 30 H 0.121 0.879 31 H 0.128 0.872 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.626 -5.994 -4.366 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.126 4.126 3 Si 0.694 3.306 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.048 3.952 10 H 0.070 0.930 11 C -0.059 4.059 12 N -0.388 5.388 13 C 0.049 3.951 14 C -0.254 4.254 15 C -0.136 4.136 16 C 0.005 3.995 17 C -0.157 4.157 18 C -0.111 4.111 19 C -0.209 4.209 20 C 0.113 3.887 21 F -0.122 7.122 22 N -0.187 5.187 23 H 0.252 0.748 24 H 0.078 0.922 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.158 0.842 30 H 0.139 0.861 31 H 0.146 0.854 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.292 -5.031 -4.616 13.196 hybrid contribution 0.111 0.067 0.171 0.214 sum 11.403 -4.965 -4.445 13.208 Atomic orbital electron populations 1.69881 1.06326 1.27425 1.48674 1.25054 0.94766 0.98924 0.93807 0.86971 0.80940 0.83528 0.79142 1.20182 1.21177 1.17669 1.20783 0.87320 0.95217 1.52151 0.90220 1.18127 0.96434 0.90835 0.89769 0.93031 1.22171 0.85758 0.99519 0.98447 1.58965 1.07955 1.60366 1.11483 1.21193 0.92991 0.97530 0.83419 1.21154 1.13132 0.91912 0.99205 1.19157 1.06136 0.91859 0.96418 1.17972 1.01059 0.85693 0.94825 1.19998 1.04235 0.96512 0.94996 1.20420 1.00530 0.91853 0.98266 1.20694 1.06734 1.00727 0.92777 1.17067 1.00957 0.85123 0.85553 1.91440 1.93414 1.67526 1.59779 1.41939 1.54573 1.08842 1.13320 0.74762 0.92214 0.95519 0.90935 0.86089 0.85381 0.84167 0.86114 0.85410 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.05 26.99 -169.99 -4.59 15.47 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.25 -5.68 6.82 56.52 0.39 -5.30 16 7 C -0.52 -13.59 8.84 -34.44 -0.30 -13.89 16 8 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 9 C 0.07 1.50 2.08 -92.92 -0.19 1.31 16 10 H 0.05 1.15 5.30 -51.93 -0.28 0.87 16 11 C 0.07 1.43 5.91 -3.82 -0.02 1.41 16 12 N -0.86 -14.61 9.62 -10.37 -0.10 -14.71 16 13 C 0.16 3.16 5.22 -81.75 -0.43 2.73 16 14 C -0.23 -4.55 9.73 -37.67 -0.37 -4.91 16 15 C -0.13 -2.40 6.36 -105.09 -0.67 -3.07 16 16 C 0.11 1.93 7.27 -84.00 -0.61 1.32 16 17 C -0.14 -1.89 10.07 -39.43 -0.40 -2.29 16 18 C -0.09 -1.15 10.01 -39.55 -0.40 -1.54 16 19 C -0.19 -2.63 10.01 -39.51 -0.40 -3.02 16 20 C 0.13 2.24 7.34 -39.14 -0.29 1.96 16 21 F -0.14 -2.46 17.28 2.25 0.04 -2.42 16 22 N -0.59 -10.37 6.07 -6.95 -0.04 -10.41 16 23 H 0.42 6.43 8.96 -40.82 -0.37 6.06 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.52 6.89 -51.93 -0.36 0.17 16 26 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.33 4.73 9.08 -39.29 -0.36 4.37 16 28 H 0.33 5.53 7.75 -39.30 -0.30 5.22 16 29 H 0.14 2.72 7.12 -52.49 -0.37 2.34 16 30 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 277.03 15.07 4.17 4.17 Total: -1.00 -29.34 277.03 -7.21 -36.54 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -3.30 Total: 14.34 kcal Atomic # 6 Polarization: -13.82 SS G_CDS: -4.17 Total: -17.99 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.63 Total: -50.11 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.59 Total: 15.47 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.34 -7.21 -36.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.180 kcal (2) G-P(sol) polarization free energy of solvation -29.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds