Wall clock time and date at job start Mon Mar 30 2020 06:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48503 * 109.47287 * 264.85880 * 3 2 1 5 5 H 1.48499 * 109.46887 * 24.86157 * 3 2 1 6 6 H 1.48500 * 109.46993 * 144.86119 * 3 2 1 7 7 C 1.37879 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99873 * 4.81181 * 7 2 1 9 9 C 1.50700 * 119.99769 * 184.80684 * 7 2 1 10 10 H 1.08999 * 109.47413 * 335.01512 * 9 7 2 11 11 C 1.52995 * 109.47000 * 95.01924 * 9 7 2 12 12 N 1.46903 * 109.47031 * 185.49280 * 11 9 7 13 13 C 1.50703 * 109.46812 * 215.01822 * 9 7 2 14 14 C 1.34214 * 125.03986 * 274.69895 * 13 9 7 15 15 C 1.46510 * 106.99302 * 179.86090 * 14 13 9 16 16 C 1.40627 * 106.06873 * 0.39320 * 15 14 13 17 17 C 1.39119 * 119.44734 * 179.74483 * 16 15 14 18 18 C 1.37748 * 119.96370 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.69155 * 0.02562 * 18 17 16 20 20 C 1.37866 * 120.35370 * 359.95561 * 19 18 17 21 21 F 1.35101 * 120.19578 * 180.02562 * 20 19 18 22 22 N 1.36887 * 125.04316 * 95.00403 * 13 9 7 23 23 H 0.97001 * 125.05956 * 359.97438 * 22 13 9 24 24 H 0.97003 * 120.00121 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47258 * 65.49642 * 11 9 7 26 26 H 1.08998 * 109.47438 * 305.49537 * 11 9 7 27 27 H 1.00900 * 110.99492 * 179.97438 * 12 11 9 28 28 H 1.00892 * 111.00551 * 303.95421 * 12 11 9 29 29 H 1.07997 * 126.50396 * 359.97438 * 14 13 9 30 30 H 1.07997 * 120.02450 * 179.97438 * 17 16 15 31 31 H 1.08007 * 119.65709 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.82230 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6053 1.9837 -1.3944 5 1 1.3965 2.6815 0.5886 6 1 3.4882 1.4739 0.8058 7 6 2.0045 -1.1941 -0.0005 8 1 1.4673 -2.1277 -0.0794 9 6 3.5075 -1.1964 0.1088 10 1 3.9000 -0.2480 -0.2579 11 6 3.9121 -1.3841 1.5723 12 7 5.3700 -1.2552 1.6978 13 6 4.0694 -2.3253 -0.7165 14 6 4.2093 -3.5920 -0.2957 15 6 4.7864 -4.3514 -1.4077 16 6 4.9638 -3.4316 -2.4566 17 6 5.5077 -3.8647 -3.6616 18 6 5.8677 -5.1850 -3.8187 19 6 5.6936 -6.0947 -2.7850 20 6 5.1569 -5.6879 -1.5820 21 9 4.9893 -6.5759 -0.5777 22 7 4.5184 -2.2095 -2.0044 23 1 4.5219 -1.3889 -2.5217 24 1 -0.4850 0.8401 0.0004 25 1 3.6045 -2.3737 1.9103 26 1 3.4261 -0.6240 2.1840 27 1 5.6624 -1.3749 2.6560 28 1 5.8443 -1.9067 1.0907 29 1 3.9446 -3.9787 0.6774 30 1 5.6476 -3.1664 -4.4734 31 1 6.2891 -5.5161 -4.7565 32 1 5.9804 -7.1267 -2.9236 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261090598.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:02 Heat of formation + Delta-G solvation = -19.726901 kcal Electronic energy + Delta-G solvation = -17575.255910 eV Core-core repulsion = 14642.115741 eV Total energy + Delta-G solvation = -2933.140169 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.77080 -42.20618 -38.27463 -36.50237 -34.51080 -32.53178 -31.74668 -30.10843 -28.84853 -25.69608 -24.11219 -23.05108 -22.40282 -20.63883 -19.21435 -19.06833 -17.74782 -16.87258 -16.74020 -16.56125 -16.27866 -15.91891 -15.73308 -15.13477 -15.02840 -14.64761 -14.53873 -14.04136 -13.76927 -13.36859 -12.82196 -12.60375 -12.46715 -12.34490 -12.30371 -11.91185 -11.77482 -11.47759 -10.81162 -10.52071 -9.55615 -9.14378 -8.52711 -8.35668 -6.44751 0.06856 0.58475 1.32453 1.38575 1.50550 1.78786 2.20289 2.30003 2.80560 2.97298 3.39295 3.74352 3.87516 4.02280 4.13974 4.25062 4.36989 4.46519 4.55188 4.63536 4.88763 4.90527 5.06952 5.19595 5.24232 5.34810 5.48782 5.50881 5.73730 5.91874 6.11427 6.20115 6.33274 6.60348 6.65261 6.74558 7.21812 8.79926 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.028411 B = 0.006669 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.291417 B = 4197.395606 C = 4439.600877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.240 1.240 7 C -0.516 4.516 8 H 0.030 0.970 9 C 0.075 3.925 10 H 0.054 0.946 11 C 0.080 3.920 12 N -0.851 5.851 13 C 0.139 3.861 14 C -0.242 4.242 15 C -0.163 4.163 16 C 0.104 3.896 17 C -0.134 4.134 18 C -0.075 4.075 19 C -0.176 4.176 20 C 0.104 3.896 21 F -0.153 7.153 22 N -0.584 5.584 23 H 0.424 0.576 24 H 0.270 0.730 25 H 0.021 0.979 26 H 0.061 0.939 27 H 0.346 0.654 28 H 0.339 0.661 29 H 0.129 0.871 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.442 -6.047 -6.415 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.175 4.175 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.163 1.163 7 C -0.555 4.555 8 H 0.048 0.952 9 C 0.055 3.945 10 H 0.072 0.928 11 C -0.052 4.052 12 N -0.381 5.381 13 C 0.029 3.971 14 C -0.266 4.266 15 C -0.168 4.168 16 C -0.004 4.004 17 C -0.155 4.155 18 C -0.093 4.093 19 C -0.196 4.196 20 C 0.084 3.916 21 F -0.132 7.132 22 N -0.187 5.187 23 H 0.263 0.737 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.080 0.920 27 H 0.159 0.841 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.172 0.828 31 H 0.193 0.807 32 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 14.142 -5.100 -6.671 16.447 hybrid contribution -0.718 -0.133 0.729 1.032 sum 13.424 -5.233 -5.942 15.585 Atomic orbital electron populations 1.70035 1.08321 1.28474 1.50941 1.25899 0.95418 1.02782 0.93422 0.85873 0.79729 0.78435 0.79930 1.18684 1.21322 1.16306 1.20897 0.89897 0.93273 1.51393 0.95179 1.17914 0.93421 0.91816 0.91370 0.92837 1.21864 0.87638 0.98809 0.96853 1.58841 1.05885 1.60450 1.12954 1.20774 0.94795 0.96884 0.84653 1.21177 1.13422 0.92445 0.99527 1.19356 1.07698 0.93191 0.96599 1.18372 1.01439 0.84865 0.95730 1.20492 1.02749 0.97868 0.94369 1.21020 0.98210 0.90772 0.99343 1.21164 1.04399 1.02567 0.91476 1.17443 1.02732 0.84656 0.86747 1.91408 1.93701 1.67616 1.60465 1.41838 1.54590 1.09707 1.12525 0.73721 0.92131 0.96121 0.92046 0.84126 0.84813 0.85316 0.82847 0.80711 0.82519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.96 21.45 0.30 -56.40 16 2 C 0.02 1.32 5.47 84.66 0.46 1.78 16 3 Si 0.94 41.68 26.99 68.60 1.85 43.53 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.24 -10.08 6.82 99.48 0.68 -9.40 16 7 C -0.52 -28.35 8.84 25.60 0.23 -28.12 16 8 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 9 C 0.07 3.32 2.08 -12.29 -0.03 3.30 16 10 H 0.05 2.33 5.30 -2.39 -0.01 2.32 16 11 C 0.08 3.21 5.91 86.30 0.51 3.72 16 12 N -0.85 -28.08 9.62 -186.72 -1.80 -29.88 16 13 C 0.14 5.65 5.22 40.85 0.21 5.86 16 14 C -0.24 -9.85 9.73 23.51 0.23 -9.63 16 15 C -0.16 -6.00 6.36 -20.17 -0.13 -6.13 16 16 C 0.10 3.38 7.27 39.02 0.28 3.66 16 17 C -0.13 -3.18 10.07 22.37 0.23 -2.96 16 18 C -0.07 -1.49 10.01 22.29 0.22 -1.26 16 19 C -0.18 -4.26 10.01 22.32 0.22 -4.03 16 20 C 0.10 3.40 7.34 22.55 0.17 3.56 16 21 F -0.15 -5.28 17.28 44.97 0.78 -4.50 16 22 N -0.58 -20.30 6.07 -175.91 -1.07 -21.37 16 23 H 0.42 12.62 8.96 -92.71 -0.83 11.79 16 24 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 25 H 0.02 0.84 6.89 -2.39 -0.02 0.83 16 26 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 27 H 0.35 9.48 9.08 -89.69 -0.81 8.67 16 28 H 0.34 10.94 7.75 -89.70 -0.69 10.24 16 29 H 0.13 5.33 7.12 -2.91 -0.02 5.31 16 30 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 31 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -66.74 277.03 1.49 -65.25 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: -1.18 Total: 33.61 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 2.61 Total: -30.24 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -2.57 Total: -107.64 kcal Atomic # 9 Polarization: -5.28 SS G_CDS: 0.78 Total: -4.50 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 1.85 Total: 43.53 kcal Total: -66.74 1.49 -65.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261090598.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.520 kcal (2) G-P(sol) polarization free energy of solvation -66.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds