Wall clock time and date at job start Mon Mar 30 2020 06:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38317 * 120.35371 * 299.72580 * 12 2 1 14 14 C 1.37702 * 120.53694 * 179.90419 * 13 12 2 15 15 C 1.39597 * 121.05888 * 0.60326 * 14 13 12 16 16 C 1.38886 * 117.79740 * 359.42462 * 15 14 13 17 17 C 1.38025 * 120.34834 * 120.00121 * 12 2 1 18 18 S 1.77440 * 108.27958 * 180.48312 * 16 15 14 19 19 C 1.83302 * 96.60759 * 15.24241 * 18 16 15 20 20 H 1.08990 * 111.09873 * 93.10388 * 19 18 16 21 21 C 1.52999 * 111.09926 * 217.16342 * 19 18 16 22 22 C 1.50870 * 126.82535 * 179.22632 * 15 14 13 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.07998 * 119.73136 * 0.14614 * 13 12 2 28 28 H 1.08007 * 119.46956 * 180.31521 * 14 13 12 29 29 H 1.08003 * 119.92458 * 359.87598 * 17 12 2 30 30 H 1.09001 * 109.47585 * 58.53830 * 21 19 18 31 31 H 1.08999 * 109.47244 * 178.55166 * 21 19 18 32 32 H 1.09011 * 109.46424 * 298.54479 * 21 19 18 33 33 H 1.08996 * 109.27837 * 39.36548 * 22 15 14 34 34 H 1.09003 * 109.21363 * 279.88422 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 6 1.7073 -2.0364 -1.4535 14 6 2.1627 -2.6887 -2.5775 15 6 2.9706 -2.0369 -3.5108 16 6 3.2894 -0.7060 -3.2742 17 6 2.8263 -0.0468 -2.1437 18 16 4.3040 -0.1305 -4.6113 19 6 3.9398 -1.5106 -5.7615 20 1 3.1069 -1.2634 -6.4196 21 6 5.1805 -1.8960 -6.5696 22 6 3.5525 -2.6269 -4.7716 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 1.0882 -2.5631 -0.7424 28 1 1.8942 -3.7226 -2.7371 29 1 3.0883 0.9878 -1.9783 30 1 5.9823 -2.1836 -5.8895 31 1 4.9416 -2.7338 -7.2247 32 1 5.5015 -1.0450 -7.1705 33 1 2.8146 -3.2804 -5.2370 34 1 4.4396 -3.2080 -4.5196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:35 Heat of formation + Delta-G solvation = 4.940986 kcal Electronic energy + Delta-G solvation = -15400.151766 eV Core-core repulsion = 13002.001701 eV Total energy + Delta-G solvation = -2398.150064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03688 -35.83488 -33.88723 -31.52546 -30.34266 -29.26824 -25.93976 -25.12308 -23.20532 -21.85057 -21.22174 -19.58596 -16.93139 -16.05985 -15.78674 -15.04884 -14.74001 -14.53208 -13.98433 -13.39978 -13.31971 -12.89010 -12.33466 -12.22489 -12.07360 -12.04641 -11.56717 -11.41664 -11.15282 -10.92886 -10.79580 -10.59673 -10.36131 -10.13113 -9.78636 -9.50150 -9.17736 -8.96176 -8.40774 -7.90771 -7.07388 -6.03956 -4.10901 1.66268 1.87682 1.93125 2.52139 3.27622 3.35952 3.40369 4.23245 4.42374 4.49110 4.66899 4.91794 5.20409 5.26895 5.30810 5.43505 5.53123 5.64784 5.73683 5.86400 5.93842 6.02913 6.09996 6.32059 6.57644 6.75260 6.81888 6.92606 7.09381 7.15134 7.28236 7.56093 7.69482 7.92223 8.05995 8.34931 8.91748 9.53964 11.01808 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.005190 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.949184 B = 5393.322856 C = 5460.205170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.037 0.963 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.011 4.011 13 C -0.108 4.108 14 C -0.100 4.100 15 C -0.140 4.140 16 C -0.075 4.075 17 C -0.099 4.099 18 S -0.173 6.173 19 C -0.055 4.055 20 H 0.100 0.900 21 C -0.131 4.131 22 C -0.075 4.075 23 H 0.029 0.971 24 H 0.086 0.914 25 H 0.009 0.991 26 H 0.261 0.739 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.917 -5.909 -14.652 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.055 0.945 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.013 4.013 13 C -0.127 4.127 14 C -0.119 4.119 15 C -0.145 4.145 16 C -0.187 4.187 17 C -0.122 4.122 18 S 0.068 5.932 19 C -0.184 4.184 20 H 0.118 0.882 21 C -0.189 4.189 22 C -0.113 4.113 23 H 0.048 0.952 24 H 0.105 0.895 25 H 0.028 0.972 26 H 0.071 0.929 27 H 0.146 0.854 28 H 0.130 0.870 29 H 0.138 0.862 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.641 -4.753 -14.761 16.187 hybrid contribution -0.481 -1.425 1.159 1.899 sum 4.159 -6.178 -13.602 15.507 Atomic orbital electron populations 1.21783 0.97369 0.99373 1.00396 1.17918 0.93019 0.95557 0.88263 0.94537 1.21128 1.31329 1.12373 0.89735 0.92338 1.24957 0.95014 0.94969 0.98970 1.69897 1.36675 1.22797 1.23392 0.86514 0.78685 0.79734 0.82984 1.19733 1.20981 1.20973 1.20660 0.92008 0.93717 0.94945 1.20946 1.00437 0.95005 0.96338 1.20721 0.97862 0.99125 0.94221 1.20542 1.02456 0.93656 0.97840 1.21794 1.01927 0.96136 0.98849 1.20443 0.99079 0.99825 0.92823 1.85917 1.59511 1.35615 1.12141 1.23925 1.01688 0.94956 0.97783 0.88181 1.21695 0.95730 1.01802 0.99697 1.20866 1.01374 0.97398 0.91688 0.95190 0.89511 0.97172 0.92946 0.85446 0.86962 0.86177 0.91295 0.91133 0.91707 0.90079 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.79 37.16 0.33 -2.80 16 2 C 0.07 1.76 2.49 -92.92 -0.23 1.53 16 3 H 0.04 0.98 7.90 -51.93 -0.41 0.57 16 4 C -0.51 -13.68 8.25 -34.44 -0.28 -13.96 16 5 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 6 C 0.06 1.69 5.31 -17.82 -0.09 1.60 16 7 N -0.89 -24.97 11.33 55.43 0.63 -24.34 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C -0.01 -0.25 4.73 -104.67 -0.49 -0.74 16 13 C -0.11 -2.12 8.70 -39.75 -0.35 -2.47 16 14 C -0.10 -1.69 9.97 -39.27 -0.39 -2.08 16 15 C -0.14 -2.31 5.98 -103.79 -0.62 -2.93 16 16 C -0.08 -1.38 6.48 -39.13 -0.25 -1.63 16 17 C -0.10 -2.02 9.69 -39.44 -0.38 -2.40 16 18 S -0.17 -2.68 22.56 -107.50 -2.43 -5.11 16 19 C -0.05 -0.63 4.04 -26.13 -0.11 -0.74 16 20 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 21 C -0.13 -1.14 9.32 37.16 0.35 -0.79 16 22 C -0.08 -0.93 5.87 -27.20 -0.16 -1.09 16 23 H 0.03 0.67 7.43 -51.93 -0.39 0.28 16 24 H 0.09 2.26 6.08 -51.93 -0.32 1.94 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.13 2.49 7.60 -52.49 -0.40 2.09 16 28 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 29 H 0.12 2.41 7.96 -52.48 -0.42 1.99 16 30 H 0.07 0.62 8.04 -51.93 -0.42 0.21 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 LS Contribution 291.83 15.07 4.40 4.40 Total: -1.00 -28.44 291.83 -9.93 -38.37 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.82 Total: -0.85 kcal Atomic # 6 Polarization: -25.83 SS G_CDS: -2.69 Total: -28.52 kcal Atomic # 7 Polarization: -24.97 SS G_CDS: 0.63 Total: -24.34 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.43 Total: -5.11 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.44 -9.93 -38.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.316 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds