Wall clock time and date at job start Mon Mar 30 2020 06:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99329 * 2 1 3 13 13 C 1.38317 * 120.35371 * 299.72580 * 12 2 1 14 14 C 1.37702 * 120.53694 * 179.90419 * 13 12 2 15 15 C 1.39597 * 121.05888 * 0.60326 * 14 13 12 16 16 C 1.38886 * 117.79740 * 359.42462 * 15 14 13 17 17 C 1.38025 * 120.34834 * 120.00121 * 12 2 1 18 18 S 1.77440 * 108.27958 * 180.48312 * 16 15 14 19 19 C 1.83302 * 96.60759 * 15.24241 * 18 16 15 20 20 H 1.08990 * 111.09873 * 93.10388 * 19 18 16 21 21 C 1.52999 * 111.09926 * 217.16342 * 19 18 16 22 22 C 1.50870 * 126.82535 * 179.22632 * 15 14 13 23 23 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 25 25 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 1.07998 * 119.73136 * 0.14614 * 13 12 2 28 28 H 1.08007 * 119.46956 * 180.31521 * 14 13 12 29 29 H 1.08003 * 119.92458 * 359.87598 * 17 12 2 30 30 H 1.09001 * 109.47585 * 58.53830 * 21 19 18 31 31 H 1.08999 * 109.47244 * 178.55166 * 21 19 18 32 32 H 1.09011 * 109.46424 * 298.54479 * 21 19 18 33 33 H 1.08996 * 109.27837 * 39.36548 * 22 15 14 34 34 H 1.09003 * 109.21363 * 279.88422 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1119 4.0080 9 1 3.1571 -2.2791 3.6039 10 1 3.1606 -0.1759 4.8105 11 1 1.1811 -1.5768 4.8222 12 6 2.0323 -0.7105 -1.2304 13 6 1.7073 -2.0364 -1.4535 14 6 2.1627 -2.6887 -2.5775 15 6 2.9706 -2.0369 -3.5108 16 6 3.2894 -0.7060 -3.2742 17 6 2.8263 -0.0468 -2.1437 18 16 4.3040 -0.1305 -4.6113 19 6 3.9398 -1.5106 -5.7615 20 1 3.1069 -1.2634 -6.4196 21 6 5.1805 -1.8960 -6.5696 22 6 3.5525 -2.6269 -4.7716 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.7164 1.1670 3.4843 27 1 1.0882 -2.5631 -0.7424 28 1 1.8942 -3.7226 -2.7371 29 1 3.0883 0.9878 -1.9783 30 1 5.9823 -2.1836 -5.8895 31 1 4.9416 -2.7338 -7.2247 32 1 5.5015 -1.0450 -7.1705 33 1 2.8146 -3.2804 -5.2370 34 1 4.4396 -3.2080 -4.5196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:34 Heat of formation + Delta-G solvation = -8.318260 kcal Electronic energy + Delta-G solvation = -15400.726730 eV Core-core repulsion = 13002.001701 eV Total energy + Delta-G solvation = -2398.725028 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46737 -37.20745 -35.46559 -33.22426 -31.77778 -30.72739 -27.31665 -27.04878 -24.50504 -23.40367 -22.41890 -21.16016 -18.55086 -17.81336 -17.00532 -16.52828 -16.38216 -15.84494 -15.39935 -14.69844 -14.54761 -14.45488 -13.90410 -13.56730 -13.47515 -13.24936 -12.98678 -12.85786 -12.67078 -12.49141 -12.29463 -12.19165 -12.18211 -11.78582 -11.33192 -11.04325 -10.96755 -10.49826 -10.45093 -9.42660 -8.36771 -8.11454 -6.26278 0.30829 0.46458 0.64775 1.35127 1.39869 1.41991 1.53491 2.41319 2.80651 3.16196 3.48632 3.72990 3.96474 4.05093 4.22678 4.32626 4.54344 4.56367 4.66616 4.73811 4.82520 4.85993 4.96373 4.98464 5.01498 5.16473 5.26694 5.27962 5.37382 5.48136 5.50517 5.66470 5.97153 6.03348 6.12185 6.32208 6.81896 7.41769 8.93183 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.039993 B = 0.005190 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.949184 B = 5393.322856 C = 5460.205170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.071 3.929 3 H 0.000 1.000 4 C -0.521 4.521 5 H 0.052 0.948 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.276 1.276 12 C -0.039 4.039 13 C -0.120 4.120 14 C -0.092 4.092 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.119 4.119 18 S -0.204 6.204 19 C -0.039 4.039 20 H 0.114 0.886 21 C -0.127 4.127 22 C -0.075 4.075 23 H 0.037 0.963 24 H 0.061 0.939 25 H 0.022 0.978 26 H 0.262 0.738 27 H 0.123 0.877 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.663 -8.620 -16.844 19.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 H 0.018 0.982 4 C -0.559 4.559 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.201 1.201 12 C -0.041 4.041 13 C -0.139 4.139 14 C -0.111 4.111 15 C -0.136 4.136 16 C -0.203 4.203 17 C -0.143 4.143 18 S 0.037 5.963 19 C -0.167 4.167 20 H 0.133 0.867 21 C -0.186 4.186 22 C -0.113 4.113 23 H 0.056 0.944 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.141 0.859 28 H 0.169 0.831 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.133 0.867 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.389 -7.461 -16.964 19.299 hybrid contribution -0.667 -0.579 1.691 1.908 sum 4.721 -8.040 -15.273 17.894 Atomic orbital electron populations 1.21608 0.96901 0.99563 0.99665 1.17748 0.93499 0.93787 0.89684 0.98194 1.21370 1.31253 1.12291 0.90939 0.92946 1.25735 0.95210 0.95661 1.01839 1.70025 1.37592 1.23983 1.24057 0.85521 0.78265 0.78644 0.79342 1.19251 1.20796 1.20149 1.20352 0.94234 0.94961 0.94581 1.20963 1.01123 0.94121 0.97731 1.21048 0.96670 1.00637 0.92777 1.21179 1.00719 0.92724 0.98991 1.22002 1.02066 0.97362 0.98827 1.20356 1.00162 0.99502 0.94243 1.86027 1.58802 1.38931 1.12585 1.24199 1.03579 0.92066 0.96846 0.86741 1.21732 0.94156 1.03058 0.99631 1.20995 1.02679 0.97771 0.89807 0.94376 0.92064 0.95886 0.92842 0.85862 0.83073 0.87736 0.91599 0.87947 0.91361 0.86728 0.88075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.79 71.98 0.63 -5.30 16 2 C 0.07 3.75 2.49 -12.29 -0.03 3.71 16 3 H 0.00 -0.01 7.90 -2.39 -0.02 -0.02 16 4 C -0.52 -29.05 8.25 25.60 0.21 -28.84 16 5 H 0.05 2.92 7.60 -2.91 -0.02 2.89 16 6 C 0.01 0.79 5.31 84.66 0.45 1.24 16 7 N -0.92 -53.26 11.33 21.45 0.24 -53.02 16 8 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 C -0.04 -1.79 4.73 -19.90 -0.09 -1.88 16 13 C -0.12 -4.69 8.70 22.16 0.19 -4.50 16 14 C -0.09 -2.88 9.97 22.47 0.22 -2.66 16 15 C -0.13 -3.97 5.98 -19.33 -0.12 -4.09 16 16 C -0.09 -3.29 6.48 22.56 0.15 -3.14 16 17 C -0.12 -5.11 9.69 22.36 0.22 -4.90 16 18 S -0.20 -6.09 22.56 -56.49 -1.27 -7.36 16 19 C -0.04 -0.74 4.04 30.98 0.13 -0.61 16 20 H 0.11 1.91 8.14 -2.39 -0.02 1.90 16 21 C -0.13 -1.64 9.32 71.98 0.67 -0.97 16 22 C -0.08 -1.49 5.87 30.29 0.18 -1.32 16 23 H 0.04 1.76 7.43 -2.39 -0.02 1.74 16 24 H 0.06 3.33 6.08 -2.39 -0.01 3.32 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 27 H 0.12 4.82 7.60 -2.91 -0.02 4.80 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 29 H 0.10 4.59 7.96 -2.91 -0.02 4.57 16 30 H 0.06 0.93 8.04 -2.39 -0.02 0.91 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.80 7.79 -2.39 -0.02 1.78 16 Total: -1.00 -64.25 291.83 4.87 -59.37 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.07 Total: 8.37 kcal Atomic # 6 Polarization: -56.06 SS G_CDS: 2.81 Total: -53.25 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.24 Total: -53.02 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: -6.09 SS G_CDS: -1.27 Total: -7.36 kcal Total: -64.25 4.87 -59.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.057 kcal (2) G-P(sol) polarization free energy of solvation -64.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds