Wall clock time and date at job start Mon Mar 30 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47404 * 2 1 4 4 C 1.50705 * 109.47452 * 120.00607 * 2 1 3 5 5 H 1.07998 * 119.99732 * 29.57044 * 4 2 1 6 6 C 1.37877 * 119.99690 * 209.57173 * 4 2 1 7 7 N 1.31507 * 120.00264 * 353.11028 * 6 4 2 8 8 Si 1.86800 * 119.99632 * 173.11053 * 6 4 2 9 9 H 1.48498 * 109.47137 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.46944 * 299.99644 * 8 6 4 11 11 H 1.48505 * 109.47388 * 59.99758 * 8 6 4 12 12 C 1.50701 * 109.46872 * 240.00387 * 2 1 3 13 13 C 1.38322 * 120.35446 * 299.71682 * 12 2 1 14 14 C 1.37698 * 120.54601 * 179.90279 * 13 12 2 15 15 C 1.39608 * 121.05360 * 0.61192 * 14 13 12 16 16 C 1.38882 * 117.79590 * 359.42060 * 15 14 13 17 17 C 1.38028 * 120.35524 * 119.99859 * 12 2 1 18 18 S 1.77436 * 108.27775 * 180.48604 * 16 15 14 19 19 C 1.83291 * 96.60946 * 15.24018 * 18 16 15 20 20 H 1.09001 * 111.10447 * 217.20281 * 19 18 16 21 21 C 1.53008 * 111.10004 * 93.10645 * 19 18 16 22 22 C 1.50871 * 126.82681 * 179.22546 * 15 14 13 23 23 H 1.09004 * 109.47341 * 185.41307 * 1 2 3 24 24 H 1.09006 * 109.46820 * 305.40761 * 1 2 3 25 25 H 1.08998 * 109.47431 * 65.40976 * 1 2 3 26 26 H 0.97000 * 120.00494 * 354.59120 * 7 6 4 27 27 H 1.08005 * 119.72912 * 0.15340 * 13 12 2 28 28 H 1.08001 * 119.47903 * 180.31771 * 14 13 12 29 29 H 1.07997 * 119.91930 * 359.87721 * 17 12 2 30 30 H 1.09000 * 109.46678 * 61.45049 * 21 19 18 31 31 H 1.08994 * 109.47377 * 181.45668 * 21 19 18 32 32 H 1.09002 * 109.46541 * 301.45625 * 21 19 18 33 33 H 1.08998 * 109.27864 * 39.36359 * 22 15 14 34 34 H 1.08998 * 109.27622 * 279.92620 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4454 -1.5005 1.6753 6 6 3.2413 -0.3521 1.7880 7 7 4.0185 0.5124 1.1733 8 14 3.7751 -1.0945 3.4169 9 1 5.1034 -0.5502 3.7973 10 1 2.7809 -0.7533 4.4659 11 1 3.8658 -2.5707 3.2821 12 6 2.0322 -0.7103 -1.2305 13 6 1.7073 -2.0362 -1.4538 14 6 2.1624 -2.6885 -2.5779 15 6 2.9704 -2.0366 -3.5113 16 6 3.2891 -0.7057 -3.2745 17 6 2.8261 -0.0466 -2.1439 18 16 4.3036 -0.1301 -4.6117 19 6 3.9394 -1.5099 -5.7619 20 1 4.8234 -1.7850 -6.3372 21 6 2.7701 -1.1629 -6.6857 22 6 3.5521 -2.6264 -4.7722 23 1 -0.3634 -1.0231 0.0969 24 1 -0.3633 0.5955 0.8377 25 1 -0.3634 0.4276 -0.9344 26 1 3.7792 0.8384 0.2915 27 1 1.0882 -2.5630 -0.7427 28 1 1.8940 -3.7224 -2.7376 29 1 3.0881 0.9880 -1.9784 30 1 3.0297 -0.2933 -7.2893 31 1 2.5598 -2.0094 -7.3394 32 1 1.8877 -0.9388 -6.0863 33 1 2.8142 -3.2798 -5.2376 34 1 4.4389 -3.2084 -4.5214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:37 Heat of formation + Delta-G solvation = -0.162576 kcal Electronic energy + Delta-G solvation = -15715.843536 eV Core-core repulsion = 13317.472165 eV Total energy + Delta-G solvation = -2398.371371 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99932 -35.93613 -33.86214 -31.34057 -30.23264 -29.41033 -26.21115 -24.58330 -23.10043 -21.91077 -21.19916 -19.74716 -17.24435 -16.32633 -15.17240 -14.97375 -14.86931 -14.23588 -13.75696 -13.57398 -13.16633 -12.90885 -12.68773 -12.43448 -12.21795 -11.84627 -11.58331 -11.32349 -11.14922 -10.97225 -10.82469 -10.56997 -10.21870 -10.13722 -9.79954 -9.57868 -9.09339 -8.70354 -8.47256 -7.75177 -6.98965 -6.39506 -4.13040 1.76427 1.98689 2.03447 2.61182 3.42343 3.43236 3.62313 4.34902 4.51809 4.58981 4.78698 4.92356 5.26998 5.32030 5.40445 5.57593 5.65464 5.74978 5.77839 5.93910 6.06570 6.10026 6.14419 6.27365 6.42160 6.49756 6.61308 6.74983 6.90067 6.96988 7.13697 7.29012 7.59862 7.67647 8.13058 8.38016 8.80463 9.58383 10.97859 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.006432 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.477553 B = 4352.457964 C = 4554.312505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.051 3.949 3 H 0.042 0.958 4 C -0.587 4.587 5 H 0.053 0.947 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 1.064 2.936 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.288 1.288 12 C -0.009 4.009 13 C -0.107 4.107 14 C -0.100 4.100 15 C -0.142 4.142 16 C -0.071 4.071 17 C -0.098 4.098 18 S -0.171 6.171 19 C -0.056 4.056 20 H 0.113 0.887 21 C -0.137 4.137 22 C -0.074 4.074 23 H 0.042 0.958 24 H 0.047 0.953 25 H 0.027 0.973 26 H 0.273 0.727 27 H 0.120 0.880 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -5.092 -12.276 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.032 3.968 3 H 0.061 0.939 4 C -0.625 4.625 5 H 0.071 0.929 6 C -0.183 4.183 7 N -0.537 5.537 8 Si 0.892 3.108 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.214 1.214 12 C -0.012 4.012 13 C -0.127 4.127 14 C -0.120 4.120 15 C -0.147 4.147 16 C -0.183 4.183 17 C -0.122 4.122 18 S 0.070 5.930 19 C -0.184 4.184 20 H 0.131 0.869 21 C -0.196 4.196 22 C -0.112 4.112 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.128 0.872 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.643 -3.988 -11.361 12.057 hybrid contribution -1.761 -1.210 -0.905 2.320 sum -2.404 -5.198 -12.266 13.537 Atomic orbital electron populations 1.21733 0.97442 1.00227 0.98831 1.18114 0.91981 0.96348 0.90398 0.93941 1.21850 1.07288 1.22649 1.10701 0.92892 1.25854 0.93162 0.95380 1.03898 1.70768 1.38525 1.28748 1.15645 0.83612 0.76399 0.75735 0.75005 1.20743 1.21299 1.21434 1.20877 0.92716 0.94178 0.93420 1.20759 1.00886 0.94892 0.96130 1.20655 0.98098 0.98882 0.94383 1.20476 1.02749 0.93655 0.97866 1.21775 1.01559 0.96119 0.98797 1.20374 0.99377 0.99687 0.92716 1.85926 1.59403 1.35755 1.11903 1.23963 1.02128 0.94983 0.97366 0.86884 1.21947 0.97249 1.01687 0.98688 1.20826 1.01280 0.97294 0.91787 0.93886 0.93394 0.95379 0.91581 0.86153 0.87187 0.86579 0.91661 0.91750 0.91766 0.90097 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 8.92 37.15 0.33 -2.26 16 2 C 0.05 1.23 2.15 -92.93 -0.20 1.03 16 3 H 0.04 1.11 6.68 -51.93 -0.35 0.77 16 4 C -0.59 -15.84 7.94 -34.44 -0.27 -16.11 16 5 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 6 C 0.02 0.64 5.45 -17.82 -0.10 0.54 16 7 N -0.90 -26.93 13.55 55.43 0.75 -26.18 16 8 Si 1.06 24.88 29.91 -169.99 -5.08 19.80 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 C -0.01 -0.21 4.65 -104.67 -0.49 -0.70 16 13 C -0.11 -2.22 8.86 -39.75 -0.35 -2.57 16 14 C -0.10 -1.83 9.97 -39.27 -0.39 -2.22 16 15 C -0.14 -2.55 5.98 -103.79 -0.62 -3.17 16 16 C -0.07 -1.41 6.48 -39.13 -0.25 -1.66 16 17 C -0.10 -2.19 9.15 -39.44 -0.36 -2.55 16 18 S -0.17 -2.92 22.56 -107.50 -2.43 -5.34 16 19 C -0.06 -0.70 4.04 -26.13 -0.11 -0.81 16 20 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 21 C -0.14 -1.48 9.30 37.16 0.35 -1.13 16 22 C -0.07 -1.01 5.82 -27.20 -0.16 -1.17 16 23 H 0.04 0.84 7.62 -51.93 -0.40 0.45 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.27 8.06 6.18 -40.82 -0.25 7.81 16 27 H 0.12 2.41 7.67 -52.48 -0.40 2.00 16 28 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.12 2.61 7.90 -52.49 -0.41 2.20 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 292.90 15.07 4.41 4.41 Total: -1.00 -29.84 292.90 -9.78 -39.62 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.81 Total: 0.46 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: -2.62 Total: -32.77 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.75 Total: -26.18 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.08 Total: 19.80 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.43 Total: -5.34 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.84 -9.78 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.459 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds