Wall clock time and date at job start Mon Mar 30 2020 06:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47404 * 2 1 4 4 C 1.50705 * 109.47452 * 120.00607 * 2 1 3 5 5 H 1.07998 * 119.99732 * 29.57044 * 4 2 1 6 6 C 1.37877 * 119.99690 * 209.57173 * 4 2 1 7 7 N 1.31507 * 120.00264 * 353.11028 * 6 4 2 8 8 Si 1.86800 * 119.99632 * 173.11053 * 6 4 2 9 9 H 1.48498 * 109.47137 * 179.97438 * 8 6 4 10 10 H 1.48501 * 109.46944 * 299.99644 * 8 6 4 11 11 H 1.48505 * 109.47388 * 59.99758 * 8 6 4 12 12 C 1.50701 * 109.46872 * 240.00387 * 2 1 3 13 13 C 1.38322 * 120.35446 * 299.71682 * 12 2 1 14 14 C 1.37698 * 120.54601 * 179.90279 * 13 12 2 15 15 C 1.39608 * 121.05360 * 0.61192 * 14 13 12 16 16 C 1.38882 * 117.79590 * 359.42060 * 15 14 13 17 17 C 1.38028 * 120.35524 * 119.99859 * 12 2 1 18 18 S 1.77436 * 108.27775 * 180.48604 * 16 15 14 19 19 C 1.83291 * 96.60946 * 15.24018 * 18 16 15 20 20 H 1.09001 * 111.10447 * 217.20281 * 19 18 16 21 21 C 1.53008 * 111.10004 * 93.10645 * 19 18 16 22 22 C 1.50871 * 126.82681 * 179.22546 * 15 14 13 23 23 H 1.09004 * 109.47341 * 185.41307 * 1 2 3 24 24 H 1.09006 * 109.46820 * 305.40761 * 1 2 3 25 25 H 1.08998 * 109.47431 * 65.40976 * 1 2 3 26 26 H 0.97000 * 120.00494 * 354.59120 * 7 6 4 27 27 H 1.08005 * 119.72912 * 0.15340 * 13 12 2 28 28 H 1.08001 * 119.47903 * 180.31771 * 14 13 12 29 29 H 1.07997 * 119.91930 * 359.87721 * 17 12 2 30 30 H 1.09000 * 109.46678 * 61.45049 * 21 19 18 31 31 H 1.08994 * 109.47377 * 181.45668 * 21 19 18 32 32 H 1.09002 * 109.46541 * 301.45625 * 21 19 18 33 33 H 1.08998 * 109.27864 * 39.36359 * 22 15 14 34 34 H 1.08998 * 109.27622 * 279.92620 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 1.4454 -1.5005 1.6753 6 6 3.2413 -0.3521 1.7880 7 7 4.0185 0.5124 1.1733 8 14 3.7751 -1.0945 3.4169 9 1 5.1034 -0.5502 3.7973 10 1 2.7809 -0.7533 4.4659 11 1 3.8658 -2.5707 3.2821 12 6 2.0322 -0.7103 -1.2305 13 6 1.7073 -2.0362 -1.4538 14 6 2.1624 -2.6885 -2.5779 15 6 2.9704 -2.0366 -3.5113 16 6 3.2891 -0.7057 -3.2745 17 6 2.8261 -0.0466 -2.1439 18 16 4.3036 -0.1301 -4.6117 19 6 3.9394 -1.5099 -5.7619 20 1 4.8234 -1.7850 -6.3372 21 6 2.7701 -1.1629 -6.6857 22 6 3.5521 -2.6264 -4.7722 23 1 -0.3634 -1.0231 0.0969 24 1 -0.3633 0.5955 0.8377 25 1 -0.3634 0.4276 -0.9344 26 1 3.7792 0.8384 0.2915 27 1 1.0882 -2.5630 -0.7427 28 1 1.8940 -3.7224 -2.7376 29 1 3.0881 0.9880 -1.9784 30 1 3.0297 -0.2933 -7.2893 31 1 2.5598 -2.0094 -7.3394 32 1 1.8877 -0.9388 -6.0863 33 1 2.8142 -3.2798 -5.2376 34 1 4.4389 -3.2084 -4.5214 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091023.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:37 Heat of formation + Delta-G solvation = -14.924591 kcal Electronic energy + Delta-G solvation = -15716.483665 eV Core-core repulsion = 13317.472165 eV Total energy + Delta-G solvation = -2399.011500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52186 -37.41045 -35.43741 -33.16448 -31.77919 -30.81757 -27.45900 -26.63035 -24.52291 -23.52544 -22.51829 -21.33858 -19.04096 -17.92834 -16.72346 -16.36025 -16.04174 -15.70144 -15.60102 -15.22529 -14.54510 -14.34225 -14.19360 -13.83054 -13.55594 -13.38386 -12.97641 -12.84808 -12.64676 -12.43489 -12.20753 -12.05223 -11.96254 -11.87077 -11.52988 -10.96599 -10.77654 -10.57463 -10.43164 -9.39413 -8.58782 -8.39856 -6.32321 0.31497 0.46914 0.64083 1.32851 1.52128 1.59897 1.78286 2.57004 2.80078 3.20225 3.51349 3.71534 3.90578 3.97546 4.23073 4.30369 4.42450 4.52486 4.59221 4.68021 4.72336 4.77517 4.81851 4.87078 4.90243 4.98954 5.20169 5.24553 5.28252 5.32846 5.39858 5.60746 5.82457 6.06392 6.11569 6.24809 6.62431 7.47969 8.78669 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.030813 B = 0.006432 C = 0.006147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.477553 B = 4352.457964 C = 4554.312505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.045 3.955 3 H 0.006 0.994 4 C -0.589 4.589 5 H 0.055 0.945 6 C -0.031 4.031 7 N -0.938 5.938 8 Si 1.110 2.890 9 H -0.290 1.290 10 H -0.267 1.267 11 H -0.271 1.271 12 C -0.033 4.033 13 C -0.121 4.121 14 C -0.094 4.094 15 C -0.134 4.134 16 C -0.089 4.089 17 C -0.124 4.124 18 S -0.211 6.211 19 C -0.037 4.037 20 H 0.146 0.854 21 C -0.135 4.135 22 C -0.074 4.074 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.042 0.958 26 H 0.260 0.740 27 H 0.124 0.876 28 H 0.151 0.849 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.043 0.957 33 H 0.117 0.883 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -8.102 -14.219 16.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.026 3.974 3 H 0.024 0.976 4 C -0.627 4.627 5 H 0.073 0.927 6 C -0.230 4.230 7 N -0.575 5.575 8 Si 0.932 3.068 9 H -0.216 1.216 10 H -0.192 1.192 11 H -0.196 1.196 12 C -0.036 4.036 13 C -0.141 4.141 14 C -0.114 4.114 15 C -0.140 4.140 16 C -0.201 4.201 17 C -0.148 4.148 18 S 0.029 5.971 19 C -0.164 4.164 20 H 0.164 0.836 21 C -0.194 4.194 22 C -0.112 4.112 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.169 0.831 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.062 0.938 33 H 0.135 0.865 34 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.044 -6.998 -13.318 15.080 hybrid contribution -1.673 -0.281 -0.473 1.762 sum -2.717 -7.279 -13.791 15.829 Atomic orbital electron populations 1.21620 0.94898 1.01120 0.99677 1.18073 0.94159 0.94281 0.90910 0.97600 1.22165 1.06838 1.22116 1.11572 0.92711 1.27230 0.93682 0.95320 1.06779 1.70867 1.39791 1.31133 1.15704 0.83042 0.76019 0.75856 0.71922 1.21587 1.19189 1.19623 1.20638 0.94171 0.95318 0.93455 1.20878 1.01627 0.93985 0.97561 1.21046 0.96817 1.00509 0.92992 1.21139 1.01097 0.92590 0.99169 1.21991 1.01815 0.97499 0.98763 1.20267 1.00914 0.99008 0.94592 1.86023 1.58961 1.39320 1.12751 1.24266 1.04158 0.91674 0.96340 0.83638 1.21961 0.95496 1.03432 0.98474 1.20960 1.02580 0.97716 0.89904 0.92648 0.93390 0.93877 0.92957 0.85766 0.83086 0.89228 0.91152 0.88203 0.93787 0.86508 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 8.92 71.98 0.64 -4.23 16 2 C 0.04 2.28 2.15 -12.29 -0.03 2.25 16 3 H 0.01 0.33 6.68 -2.39 -0.02 0.31 16 4 C -0.59 -32.58 7.94 25.60 0.20 -32.37 16 5 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 6 C -0.03 -1.81 5.45 84.66 0.46 -1.35 16 7 N -0.94 -58.79 13.55 21.45 0.29 -58.50 16 8 Si 1.11 50.64 29.91 68.60 2.05 52.69 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 C -0.03 -1.58 4.65 -19.89 -0.09 -1.68 16 13 C -0.12 -4.94 8.86 22.16 0.20 -4.74 16 14 C -0.09 -3.18 9.97 22.47 0.22 -2.96 16 15 C -0.13 -4.50 5.98 -19.32 -0.12 -4.61 16 16 C -0.09 -3.58 6.48 22.56 0.15 -3.43 16 17 C -0.12 -5.87 9.15 22.36 0.20 -5.66 16 18 S -0.21 -7.09 22.56 -56.49 -1.27 -8.36 16 19 C -0.04 -0.78 4.04 30.98 0.13 -0.65 16 20 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 21 C -0.13 -2.37 9.30 71.98 0.67 -1.70 16 22 C -0.07 -1.67 5.82 30.29 0.18 -1.49 16 23 H 0.05 2.16 7.62 -2.39 -0.02 2.14 16 24 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.26 16.53 6.18 -92.71 -0.57 15.95 16 27 H 0.12 4.86 7.67 -2.91 -0.02 4.84 16 28 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 29 H 0.09 4.51 7.90 -2.91 -0.02 4.49 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.12 1.90 7.91 -2.39 -0.02 1.88 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.71 292.90 5.15 -63.56 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 1.27 Total: 13.24 kcal Atomic # 6 Polarization: -65.44 SS G_CDS: 2.81 Total: -62.63 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: 0.29 Total: -58.50 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.05 Total: 52.69 kcal Atomic # 16 Polarization: -7.09 SS G_CDS: -1.27 Total: -8.36 kcal Total: -68.71 5.15 -63.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091023.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.638 kcal (2) G-P(sol) polarization free energy of solvation -68.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds