Wall clock time and date at job start Mon Mar 30 2020 06:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47198 * 2 1 4 4 C 1.50698 * 109.47274 * 239.99844 * 2 1 3 5 5 H 1.07995 * 120.00261 * 240.00254 * 4 2 1 6 6 C 1.37879 * 119.99822 * 60.00093 * 4 2 1 7 7 N 1.31517 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47440 * 89.99785 * 8 6 4 10 10 H 1.48506 * 109.47190 * 210.00140 * 8 6 4 11 11 H 1.48502 * 109.47138 * 329.99835 * 8 6 4 12 12 C 1.50695 * 109.47325 * 119.99817 * 2 1 3 13 13 C 1.38073 * 119.91831 * 59.97731 * 12 2 1 14 14 C 1.38286 * 119.29216 * 179.71891 * 13 12 2 15 15 C 1.37737 * 120.54379 * 0.40850 * 14 13 12 16 16 C 1.39558 * 121.05481 * 359.56303 * 15 14 13 17 17 C 1.38773 * 119.92505 * 240.00135 * 12 2 1 18 18 S 1.77435 * 130.57108 * 0.33682 * 17 12 2 19 19 C 1.83306 * 96.60820 * 164.60537 * 18 17 12 20 20 H 1.08995 * 111.09527 * 266.90602 * 19 18 17 21 21 C 1.52998 * 111.13455 * 142.82724 * 19 18 17 22 22 C 1.50871 * 126.83536 * 180.63546 * 16 15 14 23 23 H 1.08996 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47003 * 300.00445 * 1 2 3 25 25 H 1.09005 * 109.46932 * 59.99830 * 1 2 3 26 26 H 0.97003 * 119.99877 * 179.97438 * 7 6 4 27 27 H 1.08005 * 120.35297 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.72414 * 180.13174 * 14 13 12 29 29 H 1.08002 * 119.47490 * 179.85087 * 15 14 13 30 30 H 1.09001 * 109.47369 * 308.27768 * 21 19 18 31 31 H 1.09001 * 109.46791 * 68.27211 * 21 19 18 32 32 H 1.08993 * 109.47408 * 188.27612 * 21 19 18 33 33 H 1.09003 * 109.27978 * 320.50652 * 22 16 15 34 34 H 1.09007 * 109.27362 * 80.00805 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0323 -0.7103 1.2304 13 6 1.6974 -2.0321 1.4475 14 6 2.1703 -2.6730 2.5780 15 6 2.9603 -2.0014 3.4845 16 6 3.3106 -0.6655 3.2834 17 6 2.8301 -0.0344 2.1428 18 16 3.4145 1.6410 2.1459 19 6 3.9229 1.6838 3.9065 20 1 3.1211 2.0679 4.5371 21 6 5.2036 2.5003 4.0912 22 6 4.1745 0.1877 4.1788 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 1.0768 -2.5613 0.7395 28 1 1.9144 -3.7075 2.7536 29 1 3.3183 -2.5181 4.3628 30 1 5.9653 2.1431 3.3981 31 1 4.9959 3.5517 3.8925 32 1 5.5619 2.3877 5.1144 33 1 3.9411 -0.0327 5.2205 34 1 5.2237 -0.0398 3.9897 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261095288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:43 Heat of formation + Delta-G solvation = 6.797916 kcal Electronic energy + Delta-G solvation = -15714.753391 eV Core-core repulsion = 13316.683849 eV Total energy + Delta-G solvation = -2398.069542 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99196 -35.61987 -33.96785 -31.40981 -30.80892 -28.31292 -26.30070 -25.11061 -22.92635 -22.27296 -20.81954 -19.32592 -16.83285 -16.20989 -15.62978 -15.00134 -14.56455 -14.42915 -14.20263 -13.28936 -12.97104 -12.76587 -12.58039 -12.17008 -11.82084 -11.72344 -11.46457 -11.31538 -11.09132 -10.87862 -10.79098 -10.63449 -10.26324 -10.11893 -9.69070 -9.32082 -9.16729 -8.84149 -8.34490 -7.87227 -6.82148 -5.98661 -4.05680 1.73144 1.98968 2.07695 2.84278 3.31155 3.37851 3.41982 4.25153 4.46509 4.60591 4.82445 5.04474 5.31463 5.33235 5.40045 5.53679 5.63560 5.66624 5.73673 5.89347 6.01038 6.10414 6.15359 6.39385 6.57982 6.80600 6.85182 6.95761 7.13550 7.17570 7.27330 7.57487 7.73534 7.97861 8.10609 8.39623 8.96215 9.58364 11.06923 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.007373 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.985547 B = 3796.693691 C = 4321.153389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.071 3.929 3 H 0.041 0.959 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.001 3.999 13 C -0.099 4.099 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.085 4.085 18 S -0.134 6.134 19 C -0.073 4.073 20 H 0.098 0.902 21 C -0.129 4.129 22 C -0.076 4.076 23 H 0.028 0.972 24 H 0.009 0.991 25 H 0.087 0.913 26 H 0.261 0.739 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.790 -1.086 13.202 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.052 3.948 3 H 0.059 0.941 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.003 4.003 13 C -0.119 4.119 14 C -0.144 4.144 15 C -0.143 4.143 16 C -0.123 4.123 17 C -0.197 4.197 18 S 0.108 5.892 19 C -0.201 4.201 20 H 0.116 0.884 21 C -0.188 4.188 22 C -0.114 4.114 23 H 0.047 0.953 24 H 0.028 0.972 25 H 0.105 0.895 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.820 0.054 12.188 13.106 hybrid contribution 0.184 -1.538 -0.003 1.549 sum 5.003 -1.484 12.185 13.255 Atomic orbital electron populations 1.21779 0.97422 0.99248 1.00403 1.17940 0.92996 0.95705 0.88171 0.94105 1.21075 1.31327 1.12356 0.89781 0.92488 1.24947 0.95041 0.94964 0.98891 1.69893 1.36611 1.22719 1.23411 0.86582 0.79311 0.79406 0.82683 1.20634 1.21171 1.19898 1.20123 0.91555 0.93640 0.95020 1.21057 1.00065 0.94056 0.96740 1.20902 0.98995 0.99396 0.95105 1.20495 1.00895 0.92993 0.99944 1.20709 1.00011 0.95367 0.96183 1.21890 1.03109 0.96359 0.98338 1.86344 1.77307 1.13665 1.11885 1.23983 1.01530 0.97710 0.96899 0.88398 1.21666 0.95229 0.99740 1.02152 1.20881 1.00002 0.91184 0.99350 0.95256 0.97232 0.89478 0.92925 0.85164 0.86577 0.87200 0.91299 0.91709 0.91454 0.90266 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.78 37.16 0.33 -2.91 16 2 C 0.07 1.82 2.48 -92.93 -0.23 1.59 16 3 H 0.04 1.16 7.00 -51.93 -0.36 0.80 16 4 C -0.51 -14.10 8.24 -34.44 -0.28 -14.39 16 5 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.00 0.03 4.75 -104.49 -0.50 -0.46 16 13 C -0.10 -2.00 8.73 -39.62 -0.35 -2.35 16 14 C -0.12 -2.09 10.00 -39.75 -0.40 -2.49 16 15 C -0.12 -1.99 9.97 -39.27 -0.39 -2.38 16 16 C -0.12 -2.04 5.98 -103.79 -0.62 -2.66 16 17 C -0.08 -1.76 6.30 -39.13 -0.25 -2.01 16 18 S -0.13 -2.56 21.51 -107.50 -2.31 -4.87 16 19 C -0.07 -0.98 4.04 -26.14 -0.11 -1.09 16 20 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 21 C -0.13 -1.38 9.27 37.16 0.34 -1.03 16 22 C -0.08 -1.03 5.87 -27.21 -0.16 -1.19 16 23 H 0.03 0.67 7.39 -51.93 -0.38 0.29 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.13 2.59 7.59 -52.48 -0.40 2.19 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 1.08 7.85 -51.93 -0.41 0.67 16 LS Contribution 290.18 15.07 4.37 4.37 Total: -1.00 -29.80 290.18 -9.82 -39.62 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.78 Total: -0.95 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: -2.70 Total: -29.71 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -2.56 SS G_CDS: -2.31 Total: -4.87 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.80 -9.82 -39.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.422 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds