Wall clock time and date at job start Mon Mar 30 2020 06:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47198 * 2 1 4 4 C 1.50698 * 109.47274 * 239.99844 * 2 1 3 5 5 H 1.07995 * 120.00261 * 240.00254 * 4 2 1 6 6 C 1.37879 * 119.99822 * 60.00093 * 4 2 1 7 7 N 1.31517 * 119.99855 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99999 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47440 * 89.99785 * 8 6 4 10 10 H 1.48506 * 109.47190 * 210.00140 * 8 6 4 11 11 H 1.48502 * 109.47138 * 329.99835 * 8 6 4 12 12 C 1.50695 * 109.47325 * 119.99817 * 2 1 3 13 13 C 1.38073 * 119.91831 * 59.97731 * 12 2 1 14 14 C 1.38286 * 119.29216 * 179.71891 * 13 12 2 15 15 C 1.37737 * 120.54379 * 0.40850 * 14 13 12 16 16 C 1.39558 * 121.05481 * 359.56303 * 15 14 13 17 17 C 1.38773 * 119.92505 * 240.00135 * 12 2 1 18 18 S 1.77435 * 130.57108 * 0.33682 * 17 12 2 19 19 C 1.83306 * 96.60820 * 164.60537 * 18 17 12 20 20 H 1.08995 * 111.09527 * 266.90602 * 19 18 17 21 21 C 1.52998 * 111.13455 * 142.82724 * 19 18 17 22 22 C 1.50871 * 126.83536 * 180.63546 * 16 15 14 23 23 H 1.08996 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47003 * 300.00445 * 1 2 3 25 25 H 1.09005 * 109.46932 * 59.99830 * 1 2 3 26 26 H 0.97003 * 119.99877 * 179.97438 * 7 6 4 27 27 H 1.08005 * 120.35297 * 0.02562 * 13 12 2 28 28 H 1.07999 * 119.72414 * 180.13174 * 14 13 12 29 29 H 1.08002 * 119.47490 * 179.85087 * 15 14 13 30 30 H 1.09001 * 109.47369 * 308.27768 * 21 19 18 31 31 H 1.09001 * 109.46791 * 68.27211 * 21 19 18 32 32 H 1.08993 * 109.47408 * 188.27612 * 21 19 18 33 33 H 1.09003 * 109.27978 * 320.50652 * 22 16 15 34 34 H 1.09007 * 109.27362 * 80.00805 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3213 -1.1203 -4.0079 9 1 1.3428 -2.1617 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0323 -0.7103 1.2304 13 6 1.6974 -2.0321 1.4475 14 6 2.1703 -2.6730 2.5780 15 6 2.9603 -2.0014 3.4845 16 6 3.3106 -0.6655 3.2834 17 6 2.8301 -0.0344 2.1428 18 16 3.4145 1.6410 2.1459 19 6 3.9229 1.6838 3.9065 20 1 3.1211 2.0679 4.5371 21 6 5.2036 2.5003 4.0912 22 6 4.1745 0.1877 4.1788 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 0.7095 1.1619 -3.4844 27 1 1.0768 -2.5613 0.7395 28 1 1.9144 -3.7075 2.7536 29 1 3.3183 -2.5181 4.3628 30 1 5.9653 2.1431 3.3981 31 1 4.9959 3.5517 3.8925 32 1 5.5619 2.3877 5.1144 33 1 3.9411 -0.0327 5.2205 34 1 5.2237 -0.0398 3.9897 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261095288.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:42 Heat of formation + Delta-G solvation = -8.309498 kcal Electronic energy + Delta-G solvation = -15715.408498 eV Core-core repulsion = 13316.683849 eV Total energy + Delta-G solvation = -2398.724649 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40667 -37.05671 -35.59933 -33.28852 -32.03541 -29.99781 -27.42275 -27.25594 -24.42613 -23.71804 -22.04411 -21.00743 -18.26248 -18.23954 -16.89537 -16.71554 -16.13627 -15.79481 -15.48173 -14.81215 -14.49410 -14.24463 -13.95869 -13.49775 -13.35237 -13.17621 -12.89973 -12.82508 -12.68672 -12.57249 -12.30638 -12.22513 -12.14161 -11.85270 -11.31442 -11.05828 -10.84632 -10.51228 -10.34006 -9.34983 -8.31489 -8.10794 -6.26852 0.34542 0.56660 0.76544 1.38140 1.38945 1.49570 1.53128 2.39993 2.85781 3.15289 3.53323 3.75615 4.01117 4.14056 4.25366 4.32768 4.56435 4.63640 4.70493 4.75400 4.79678 4.86792 4.92345 4.97242 5.05910 5.20893 5.26633 5.29484 5.44581 5.47670 5.57515 5.67394 5.99068 6.03575 6.15881 6.31801 6.81227 7.40504 8.92743 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.007373 C = 0.006478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.985547 B = 3796.693691 C = 4321.153389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.073 3.927 3 H 0.003 0.997 4 C -0.522 4.522 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.037 4.037 13 C -0.119 4.119 14 C -0.116 4.116 15 C -0.114 4.114 16 C -0.115 4.115 17 C -0.109 4.109 18 S -0.224 6.224 19 C -0.046 4.046 20 H 0.110 0.890 21 C -0.126 4.126 22 C -0.074 4.074 23 H 0.036 0.964 24 H 0.017 0.983 25 H 0.060 0.940 26 H 0.262 0.738 27 H 0.120 0.880 28 H 0.154 0.846 29 H 0.157 0.843 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.294 -2.748 15.989 17.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.054 3.946 3 H 0.021 0.979 4 C -0.560 4.560 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.042 4.042 13 C -0.139 4.139 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.120 4.120 17 C -0.221 4.221 18 S 0.017 5.983 19 C -0.174 4.174 20 H 0.128 0.872 21 C -0.184 4.184 22 C -0.112 4.112 23 H 0.055 0.945 24 H 0.036 0.964 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.172 0.828 29 H 0.174 0.826 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.137 0.863 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.319 -1.615 14.981 16.339 hybrid contribution -0.255 -1.000 -0.743 1.271 sum 6.065 -2.615 14.238 15.695 Atomic orbital electron populations 1.21602 0.97365 0.99287 0.99376 1.17714 0.93110 0.93952 0.89774 0.97903 1.21340 1.31229 1.12244 0.91141 0.93230 1.25757 0.95227 0.95683 1.01872 1.70033 1.37600 1.23982 1.24035 0.85576 0.78876 0.78451 0.78916 1.19441 1.20762 1.19658 1.19912 0.94371 0.94985 0.94906 1.21079 1.01056 0.93326 0.98390 1.21287 0.97793 1.00955 0.93493 1.21026 0.99163 0.92401 1.00744 1.21315 0.99269 0.96274 0.95181 1.22035 1.03815 0.96667 0.99602 1.86532 1.77993 1.14880 1.18873 1.24203 1.03011 0.98916 0.91317 0.87170 1.21702 0.93450 0.99128 1.04125 1.20993 0.99895 0.89879 1.00415 0.94506 0.96375 0.92141 0.92878 0.86180 0.82842 0.82578 0.92036 0.91699 0.87620 0.86337 0.88145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.20 8.78 71.98 0.63 -5.57 16 2 C 0.07 4.01 2.48 -12.29 -0.03 3.98 16 3 H 0.00 0.18 7.00 -2.38 -0.02 0.16 16 4 C -0.52 -30.32 8.24 25.60 0.21 -30.11 16 5 H 0.05 2.87 7.60 -2.91 -0.02 2.85 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -55.21 11.32 21.45 0.24 -54.96 16 8 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 10 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 12 C -0.04 -1.73 4.75 -19.78 -0.09 -1.83 16 13 C -0.12 -4.79 8.73 22.24 0.19 -4.60 16 14 C -0.12 -3.57 10.00 22.16 0.22 -3.34 16 15 C -0.11 -3.19 9.97 22.47 0.22 -2.96 16 16 C -0.11 -3.69 5.98 -19.33 -0.12 -3.81 16 17 C -0.11 -4.59 6.30 22.56 0.14 -4.45 16 18 S -0.22 -8.83 21.51 -56.49 -1.22 -10.05 16 19 C -0.05 -1.14 4.04 30.98 0.13 -1.02 16 20 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 21 C -0.13 -2.29 9.27 71.98 0.67 -1.62 16 22 C -0.07 -1.70 5.87 30.29 0.18 -1.52 16 23 H 0.04 1.79 7.39 -2.39 -0.02 1.77 16 24 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 3.45 6.07 -2.38 -0.01 3.44 16 26 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 27 H 0.12 4.91 7.59 -2.91 -0.02 4.89 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 2.07 7.85 -2.38 -0.02 2.05 16 Total: -1.00 -69.64 290.18 4.93 -64.71 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 1.08 Total: 8.68 kcal Atomic # 6 Polarization: -58.44 SS G_CDS: 2.80 Total: -55.63 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: 0.24 Total: -54.96 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.22 Total: -10.05 kcal Total: -69.64 4.93 -64.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095288.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.398 kcal (2) G-P(sol) polarization free energy of solvation -69.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds