Wall clock time and date at job start Mon Mar 30 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46984 * 119.99613 * 2 1 3 5 5 H 1.07995 * 119.99707 * 120.00005 * 4 2 1 6 6 C 1.37874 * 120.00046 * 300.00234 * 4 2 1 7 7 N 1.31516 * 120.00083 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99978 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47330 * 59.99804 * 8 6 4 10 10 H 1.48501 * 109.46899 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46916 * 299.99559 * 8 6 4 12 12 C 1.50702 * 109.47092 * 239.99604 * 2 1 3 13 13 C 1.37785 * 119.69177 * 299.97953 * 12 2 1 14 14 C 1.38303 * 119.51436 * 179.68317 * 13 12 2 15 15 C 1.37814 * 120.01139 * 0.99118 * 14 13 12 16 16 C 1.39277 * 121.04294 * 359.42608 * 15 14 13 17 17 C 1.38216 * 118.82909 * 359.49733 * 16 15 14 18 18 S 1.76456 * 122.28984 * 181.82804 * 17 16 15 19 19 C 1.81611 * 102.64306 * 346.05771 * 18 17 16 20 20 C 1.53507 * 107.35188 * 46.45710 * 19 18 17 21 21 C 1.50045 * 116.45811 * 178.55411 * 16 15 14 22 22 H 1.09003 * 109.47458 * 300.00802 * 1 2 3 23 23 H 1.09004 * 109.47211 * 60.00198 * 1 2 3 24 24 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 25 25 H 0.97002 * 120.00238 * 180.02562 * 7 6 4 26 26 H 1.07998 * 120.24418 * 359.97438 * 13 12 2 27 27 H 1.07991 * 119.99240 * 180.70875 * 14 13 12 28 28 H 1.08002 * 119.48116 * 179.71495 * 15 14 13 29 29 H 1.08998 * 109.88056 * 165.92569 * 19 18 17 30 30 H 1.09006 * 109.87482 * 286.92584 * 19 18 17 31 31 H 1.08997 * 109.54967 * 47.40363 * 20 19 18 32 32 H 1.09005 * 109.54492 * 167.58828 * 20 19 18 33 33 H 1.08998 * 108.67371 * 278.07540 * 21 16 15 34 34 H 1.09000 * 108.66790 * 35.98435 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.8073 -1.1188 4.0079 10 1 1.8277 -0.4189 5.2204 11 1 1.8278 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 6 1.6959 -2.0298 -1.4418 14 6 2.1535 -2.6764 -2.5756 15 6 2.9567 -2.0075 -3.4738 16 6 3.3114 -0.6765 -3.2674 17 6 2.8344 -0.0260 -2.1450 18 16 3.1874 1.6717 -1.8182 19 6 4.5369 2.0280 -2.9802 20 6 4.1288 1.4560 -4.3450 21 6 4.2167 -0.0593 -4.2924 22 1 -0.3634 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7093 1.1620 3.4843 26 1 1.0755 -2.5538 -0.7299 27 1 1.8850 -3.7069 -2.7547 28 1 3.3130 -2.5221 -4.3539 29 1 4.6839 3.1052 -3.0585 30 1 5.4561 1.5526 -2.6376 31 1 3.1059 1.7544 -4.5744 32 1 4.8008 1.8353 -5.1150 33 1 5.2447 -0.3417 -4.0653 34 1 3.9567 -0.4582 -5.2729 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:09 Heat of formation + Delta-G solvation = 3.191894 kcal Electronic energy + Delta-G solvation = -15909.477976 eV Core-core repulsion = 13511.252065 eV Total energy + Delta-G solvation = -2398.225911 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.99744 -35.78101 -33.93196 -31.42961 -30.23786 -28.55291 -26.39984 -25.09059 -22.86036 -22.41049 -20.77669 -19.05516 -16.93472 -16.19345 -15.24755 -15.15166 -14.99541 -14.40719 -13.82148 -13.40162 -13.02672 -12.83166 -12.36359 -12.33835 -12.11824 -11.57752 -11.35335 -11.19990 -11.09520 -10.86578 -10.70203 -10.31219 -10.22324 -10.10579 -9.75334 -9.30196 -8.94039 -8.83139 -8.27499 -7.81935 -6.69915 -5.96740 -4.03037 1.82857 2.04442 2.19102 3.01126 3.34057 3.38254 3.41404 4.30487 4.48541 4.80294 4.92700 5.02592 5.33848 5.38848 5.52466 5.59380 5.68022 5.71385 5.80314 5.90394 6.10136 6.19193 6.23105 6.46176 6.64055 6.87098 6.91048 7.00918 7.16264 7.20892 7.30046 7.62927 7.75522 8.00345 8.11896 8.41740 8.97986 9.60216 11.08803 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.007802 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.904234 B = 3587.756596 C = 4068.577181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 H 0.051 0.949 4 C -0.504 4.504 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.012 4.012 13 C -0.105 4.105 14 C -0.124 4.124 15 C -0.139 4.139 16 C -0.092 4.092 17 C -0.088 4.088 18 S -0.089 6.089 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.079 4.079 22 H 0.087 0.913 23 H 0.009 0.991 24 H 0.028 0.972 25 H 0.261 0.739 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -0.893 -12.348 13.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.051 3.949 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.720 3.280 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.016 4.016 13 C -0.125 4.125 14 C -0.144 4.144 15 C -0.159 4.159 16 C -0.099 4.099 17 C -0.201 4.201 18 S 0.153 5.847 19 C -0.279 4.279 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.105 0.895 23 H 0.028 0.972 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.199 0.119 -11.436 12.183 hybrid contribution 0.965 -1.490 -0.011 1.775 sum 5.164 -1.371 -11.447 12.633 Atomic orbital electron populations 1.21784 0.97388 0.99277 1.00405 1.17994 0.92845 0.95864 0.88238 0.93178 1.21009 1.31249 1.12266 0.89718 0.92583 1.24928 0.95050 0.94983 0.98817 1.69877 1.36556 1.22717 1.23484 0.86654 0.79286 0.79723 0.82344 1.20274 1.21261 1.20295 1.20583 0.92691 0.93769 0.94565 1.20977 1.00382 0.94376 0.96797 1.20986 0.98787 0.99333 0.95293 1.20888 1.01074 0.93885 1.00010 1.19394 1.00475 0.94955 0.95044 1.21315 1.04115 0.97183 0.97464 1.86078 1.42917 1.06884 1.48788 1.23882 1.01459 1.04476 0.98124 1.21563 1.02665 0.95397 0.96131 1.20159 0.98763 0.94964 0.97747 0.89461 0.97226 0.95273 0.92891 0.85518 0.86879 0.87234 0.87930 0.89779 0.90584 0.90882 0.91170 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.78 37.16 0.33 -2.90 16 2 C 0.07 1.77 2.30 -92.92 -0.21 1.56 16 3 H 0.05 1.38 5.78 -47.75 -0.28 1.11 16 4 C -0.50 -13.92 8.23 -34.44 -0.28 -14.20 16 5 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.77 16 8 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 C -0.01 -0.26 4.77 -104.28 -0.50 -0.76 16 13 C -0.11 -2.15 8.68 -39.72 -0.34 -2.49 16 14 C -0.12 -2.12 10.03 -39.71 -0.40 -2.52 16 15 C -0.14 -2.26 9.48 -39.35 -0.37 -2.63 16 16 C -0.09 -1.60 5.77 -104.56 -0.60 -2.20 16 17 C -0.09 -1.81 6.05 -39.09 -0.24 -2.04 16 18 S -0.09 -1.73 19.69 -107.50 -2.12 -3.84 16 19 C -0.13 -1.83 6.52 37.42 0.24 -1.59 16 20 C -0.12 -1.46 5.83 -27.04 -0.16 -1.62 16 21 C -0.08 -1.05 5.29 -28.77 -0.15 -1.20 16 22 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 23 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 24 H 0.03 0.67 7.37 -51.93 -0.38 0.29 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.13 2.58 7.55 -52.49 -0.40 2.18 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.44 8.01 -52.49 -0.42 1.02 16 29 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 LS Contribution 284.31 15.07 4.28 4.28 Total: -1.00 -29.19 284.31 -9.70 -38.89 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -4.69 Total: -0.05 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: -2.78 Total: -30.94 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.63 Total: -24.77 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.12 Total: -3.84 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.19 -9.70 -38.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.084 kcal (2) G-P(sol) polarization free energy of solvation -29.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds