Wall clock time and date at job start Mon Mar 30 2020 06:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47047 * 2 1 4 4 C 1.50703 * 109.46984 * 119.99613 * 2 1 3 5 5 H 1.07995 * 119.99707 * 120.00005 * 4 2 1 6 6 C 1.37874 * 120.00046 * 300.00234 * 4 2 1 7 7 N 1.31516 * 120.00083 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99978 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47330 * 59.99804 * 8 6 4 10 10 H 1.48501 * 109.46899 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.46916 * 299.99559 * 8 6 4 12 12 C 1.50702 * 109.47092 * 239.99604 * 2 1 3 13 13 C 1.37785 * 119.69177 * 299.97953 * 12 2 1 14 14 C 1.38303 * 119.51436 * 179.68317 * 13 12 2 15 15 C 1.37814 * 120.01139 * 0.99118 * 14 13 12 16 16 C 1.39277 * 121.04294 * 359.42608 * 15 14 13 17 17 C 1.38216 * 118.82909 * 359.49733 * 16 15 14 18 18 S 1.76456 * 122.28984 * 181.82804 * 17 16 15 19 19 C 1.81611 * 102.64306 * 346.05771 * 18 17 16 20 20 C 1.53507 * 107.35188 * 46.45710 * 19 18 17 21 21 C 1.50045 * 116.45811 * 178.55411 * 16 15 14 22 22 H 1.09003 * 109.47458 * 300.00802 * 1 2 3 23 23 H 1.09004 * 109.47211 * 60.00198 * 1 2 3 24 24 H 1.08998 * 109.47295 * 180.02562 * 1 2 3 25 25 H 0.97002 * 120.00238 * 180.02562 * 7 6 4 26 26 H 1.07998 * 120.24418 * 359.97438 * 13 12 2 27 27 H 1.07991 * 119.99240 * 180.70875 * 14 13 12 28 28 H 1.08002 * 119.48116 * 179.71495 * 15 14 13 29 29 H 1.08998 * 109.88056 * 165.92569 * 19 18 17 30 30 H 1.09006 * 109.87482 * 286.92584 * 19 18 17 31 31 H 1.08997 * 109.54967 * 47.40363 * 20 19 18 32 32 H 1.09005 * 109.54492 * 167.58828 * 20 19 18 33 33 H 1.08998 * 108.67371 * 278.07540 * 21 16 15 34 34 H 1.09000 * 108.66790 * 35.98435 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5884 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.8073 -1.1188 4.0079 10 1 1.8277 -0.4189 5.2204 11 1 1.8278 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 6 1.6959 -2.0298 -1.4418 14 6 2.1535 -2.6764 -2.5756 15 6 2.9567 -2.0075 -3.4738 16 6 3.3114 -0.6765 -3.2674 17 6 2.8344 -0.0260 -2.1450 18 16 3.1874 1.6717 -1.8182 19 6 4.5369 2.0280 -2.9802 20 6 4.1288 1.4560 -4.3450 21 6 4.2167 -0.0593 -4.2924 22 1 -0.3634 0.5140 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.7093 1.1620 3.4843 26 1 1.0755 -2.5538 -0.7299 27 1 1.8850 -3.7069 -2.7547 28 1 3.3130 -2.5221 -4.3539 29 1 4.6839 3.1052 -3.0585 30 1 5.4561 1.5526 -2.6376 31 1 3.1059 1.7544 -4.5744 32 1 4.8008 1.8353 -5.1150 33 1 5.2447 -0.3417 -4.0653 34 1 3.9567 -0.4582 -5.2729 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:09 Heat of formation + Delta-G solvation = -11.354693 kcal Electronic energy + Delta-G solvation = -15910.108763 eV Core-core repulsion = 13511.252065 eV Total energy + Delta-G solvation = -2398.856698 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40396 -37.17571 -35.57593 -33.28410 -31.54019 -30.20400 -27.61819 -27.21166 -24.37391 -23.82193 -22.12048 -20.62064 -18.34540 -18.20642 -16.83166 -16.58845 -16.31622 -16.02712 -15.08297 -14.72951 -14.62923 -14.27075 -13.97395 -13.69851 -13.48620 -13.36990 -12.87075 -12.77507 -12.76065 -12.51936 -12.25706 -12.08988 -11.97157 -11.49933 -11.40644 -11.04265 -10.68722 -10.49939 -10.13324 -9.29032 -8.21344 -8.05892 -6.21548 0.42826 0.60662 0.84151 1.39992 1.41603 1.49337 1.70731 2.42628 2.90859 3.19721 3.76709 3.90025 3.92437 4.17999 4.29621 4.46208 4.51128 4.64873 4.68403 4.76938 4.83546 4.88542 4.98333 5.01368 5.08275 5.21615 5.26974 5.36741 5.51211 5.55854 5.62916 5.72439 6.02303 6.10073 6.20961 6.36890 6.85730 7.44641 8.96431 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025994 B = 0.007802 C = 0.006880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.904234 B = 3587.756596 C = 4068.577181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.069 3.931 3 H 0.025 0.975 4 C -0.518 4.518 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.269 1.269 12 C -0.049 4.049 13 C -0.126 4.126 14 C -0.119 4.119 15 C -0.130 4.130 16 C -0.093 4.093 17 C -0.102 4.102 18 S -0.173 6.173 19 C -0.110 4.110 20 C -0.114 4.114 21 C -0.081 4.081 22 H 0.061 0.939 23 H 0.017 0.983 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.113 0.887 27 H 0.147 0.853 28 H 0.154 0.846 29 H 0.124 0.876 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.085 0.915 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.611 -2.139 -14.947 16.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 H 0.043 0.957 4 C -0.556 4.556 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.779 3.221 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.053 4.053 13 C -0.146 4.146 14 C -0.139 4.139 15 C -0.150 4.150 16 C -0.099 4.099 17 C -0.215 4.215 18 S 0.069 5.931 19 C -0.257 4.257 20 C -0.153 4.153 21 C -0.118 4.118 22 H 0.079 0.921 23 H 0.036 0.964 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.131 0.869 27 H 0.165 0.835 28 H 0.172 0.828 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.083 0.917 32 H 0.132 0.868 33 H 0.104 0.896 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.096 -1.140 -14.039 15.348 hybrid contribution 0.432 -1.088 0.673 1.350 sum 6.528 -2.228 -13.366 15.041 Atomic orbital electron populations 1.21616 0.97671 0.99045 0.99367 1.17807 0.92723 0.94889 0.89523 0.95745 1.21277 1.31062 1.12086 0.91147 0.93481 1.25695 0.95293 0.95707 1.01659 1.70014 1.37570 1.23951 1.23993 0.85688 0.78650 0.78915 0.78886 1.20046 1.20659 1.19433 1.20384 0.95348 0.94901 0.94659 1.20985 1.01366 0.93886 0.98335 1.21336 0.97924 1.00780 0.93859 1.21415 0.99418 0.93415 1.00714 1.19986 0.99880 0.95559 0.94512 1.21388 1.04637 0.96961 0.98475 1.86231 1.46363 1.07995 1.52550 1.23980 0.98500 1.06008 0.97231 1.21585 1.03066 0.94915 0.95710 1.20302 0.98399 0.95411 0.97661 0.92064 0.96430 0.94940 0.92933 0.86883 0.83499 0.82832 0.85778 0.89232 0.91655 0.86751 0.89632 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.23 8.78 71.98 0.63 -5.59 16 2 C 0.07 3.74 2.30 -12.29 -0.03 3.71 16 3 H 0.02 1.45 5.78 -5.04 -0.03 1.42 16 4 C -0.52 -29.82 8.23 25.60 0.21 -29.61 16 5 H 0.05 2.71 7.59 -2.91 -0.02 2.69 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -54.59 11.32 21.45 0.24 -54.34 16 8 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C -0.05 -2.26 4.77 -19.65 -0.09 -2.35 16 13 C -0.13 -5.18 8.68 22.18 0.19 -4.99 16 14 C -0.12 -3.80 10.03 22.18 0.22 -3.57 16 15 C -0.13 -3.72 9.48 22.42 0.21 -3.51 16 16 C -0.09 -2.97 5.77 -19.82 -0.11 -3.09 16 17 C -0.10 -4.19 6.05 22.59 0.14 -4.06 16 18 S -0.17 -6.87 19.69 -56.49 -1.11 -7.98 16 19 C -0.11 -2.81 6.52 72.15 0.47 -2.34 16 20 C -0.11 -2.35 5.83 30.40 0.18 -2.17 16 21 C -0.08 -1.77 5.29 29.27 0.15 -1.61 16 22 H 0.06 3.48 6.07 -2.39 -0.01 3.46 16 23 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.03 1.59 7.37 -2.39 -0.02 1.57 16 25 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 26 H 0.11 4.78 7.55 -2.91 -0.02 4.76 16 27 H 0.15 3.61 8.06 -2.92 -0.02 3.59 16 28 H 0.15 3.06 8.01 -2.91 -0.02 3.04 16 29 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.09 2.21 8.08 -2.38 -0.02 2.19 16 31 H 0.06 1.52 8.04 -2.39 -0.02 1.50 16 32 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 1.71 8.00 -2.39 -0.02 1.69 16 Total: -1.00 -67.34 284.31 4.84 -62.50 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 1.06 Total: 10.65 kcal Atomic # 6 Polarization: -60.49 SS G_CDS: 2.62 Total: -57.87 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.24 Total: -54.34 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -6.87 SS G_CDS: -1.11 Total: -7.98 kcal Total: -67.34 4.84 -62.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.142 kcal (2) G-P(sol) polarization free energy of solvation -67.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds