Wall clock time and date at job start Mon Mar 30 2020 05:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46933 * 2 1 4 4 C 1.38343 * 119.99322 * 270.27417 * 3 2 1 5 5 C 1.37747 * 119.51450 * 180.66924 * 4 3 2 6 6 C 1.39624 * 120.61618 * 359.70204 * 5 4 3 7 7 C 1.38178 * 119.97034 * 359.23704 * 6 5 4 8 8 C 1.37774 * 119.99218 * 90.00116 * 3 2 1 9 9 C 1.50043 * 124.70898 * 182.17215 * 7 6 5 10 10 H 1.09005 * 108.67361 * 97.06803 * 9 7 6 11 11 C 1.50706 * 108.67339 * 214.97581 * 9 7 6 12 12 H 1.08001 * 119.99713 * 5.57533 * 11 9 7 13 13 C 1.37874 * 120.00213 * 185.57317 * 11 9 7 14 14 N 1.31523 * 119.99792 * 9.30546 * 13 11 9 15 15 Si 1.86802 * 120.00079 * 189.30075 * 13 11 9 16 16 H 1.48502 * 109.46920 * 94.99692 * 15 13 11 17 17 H 1.48500 * 109.46785 * 214.99745 * 15 13 11 18 18 H 1.48497 * 109.47053 * 334.99835 * 15 13 11 19 19 C 1.51883 * 113.53185 * 336.02304 * 9 7 6 20 20 C 1.53516 * 108.99554 * 60.72962 * 19 9 7 21 21 S 1.76452 * 117.73368 * 178.58914 * 6 5 4 22 22 H 1.09004 * 109.47081 * 60.00320 * 1 2 3 23 23 H 1.09001 * 109.46688 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47068 * 299.99990 * 1 2 3 25 25 H 1.09000 * 109.47068 * 240.00010 * 2 1 3 26 26 H 1.08998 * 109.46611 * 120.00186 * 2 1 3 27 27 H 1.07998 * 120.24420 * 0.41485 * 4 3 2 28 28 H 1.07996 * 119.69224 * 179.68323 * 5 4 3 29 29 H 1.07991 * 119.47816 * 0.02562 * 8 3 2 30 30 H 0.96998 * 119.99504 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.54731 * 300.87645 * 19 9 7 32 32 H 1.08996 * 109.63289 * 180.63503 * 19 9 7 33 33 H 1.09004 * 109.87815 * 168.09485 * 20 19 9 34 34 H 1.08999 * 109.94028 * 47.05342 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2575 2.0748 -1.1982 5 6 2.7298 3.3687 -1.1868 6 6 2.9763 4.0251 0.0207 7 6 2.7314 3.3816 1.2187 8 6 2.2619 2.0702 1.1933 9 6 2.9135 4.0001 2.5735 10 1 1.9479 4.3664 2.9226 11 6 3.3959 2.9382 3.5279 12 1 3.6363 1.9513 3.1609 13 6 3.5304 3.2265 4.8694 14 7 3.0684 4.3612 5.3477 15 14 4.3687 2.0054 6.0077 16 1 5.8026 2.3649 6.1496 17 1 3.7149 2.0420 7.3406 18 1 4.2551 0.6389 5.4379 19 6 3.9038 5.1516 2.5864 20 6 3.3966 6.2573 1.6500 21 16 3.6164 5.6677 -0.0534 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0682 1.5731 -2.1356 28 1 2.9114 3.8801 -2.1204 29 1 2.0795 1.5528 2.1235 30 1 3.1627 4.5638 6.2915 31 1 4.8764 4.7999 2.2422 32 1 3.9954 5.5446 3.5989 33 1 3.9751 7.1682 1.8046 34 1 2.3413 6.4517 1.8417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261101183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:36 Heat of formation + Delta-G solvation = -0.968471 kcal Electronic energy + Delta-G solvation = -15891.083745 eV Core-core repulsion = 13492.677427 eV Total energy + Delta-G solvation = -2398.406318 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.98065 -35.61065 -33.42441 -31.90446 -30.34075 -28.80710 -27.04827 -23.63000 -23.56137 -21.99233 -20.95899 -19.02865 -16.94489 -16.46271 -15.13958 -14.98205 -14.50418 -14.40146 -13.52110 -13.35333 -13.03132 -12.96134 -12.57340 -12.21394 -12.01222 -11.83108 -11.75084 -11.22723 -11.00483 -10.90784 -10.72768 -10.43098 -10.35658 -10.12407 -9.71001 -9.35395 -9.06216 -8.70510 -8.49254 -7.91388 -6.69553 -6.16701 -4.19486 1.86958 2.09232 2.34297 3.08439 3.23276 3.31239 3.34064 4.28615 4.38858 5.14702 5.17379 5.26223 5.55911 5.57652 5.64319 5.70691 5.82317 5.88497 5.99984 6.03865 6.17788 6.19285 6.37709 6.41688 6.53990 6.67246 6.81542 6.90317 6.95562 7.19577 7.28187 7.53003 7.58796 7.72431 7.87379 8.22915 8.81836 9.44299 10.91316 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.010075 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.985003 B = 2778.560091 C = 4202.054147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.127 4.127 5 C -0.107 4.107 6 C -0.089 4.089 7 C -0.033 4.033 8 C -0.093 4.093 9 C 0.067 3.933 10 H 0.050 0.950 11 C -0.512 4.512 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.887 5.887 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.105 4.105 20 C -0.092 4.092 21 S -0.175 6.175 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.134 0.866 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.131 -2.577 -8.803 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.100 4.100 4 C -0.147 4.147 5 C -0.130 4.130 6 C -0.201 4.201 7 C -0.038 4.038 8 C -0.113 4.113 9 C 0.049 3.951 10 H 0.068 0.932 11 C -0.550 4.550 12 H 0.082 0.918 13 C -0.138 4.138 14 N -0.525 5.525 15 Si 0.719 3.281 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.144 4.144 20 C -0.240 4.240 21 S 0.066 5.934 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.152 0.848 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.658 -1.749 -9.507 9.808 hybrid contribution -0.013 -1.195 1.702 2.080 sum -1.671 -2.944 -7.805 8.508 Atomic orbital electron populations 1.21744 0.95262 1.01013 1.02215 1.20463 0.95786 0.93254 1.02205 1.19794 1.00735 0.95993 0.93487 1.20628 1.02452 0.94569 0.97065 1.20689 1.01350 0.95117 0.95838 1.21266 1.06116 0.97014 0.95691 1.20387 0.94649 0.94100 0.94681 1.21415 0.98044 0.94346 0.97482 1.17560 0.96557 0.93901 0.87103 0.93197 1.21190 1.44893 0.97270 0.91647 0.91786 1.24966 0.95152 0.95631 0.98048 1.69928 1.44556 1.23807 1.14205 0.86580 0.79840 0.81607 0.80102 1.20583 1.21220 1.19733 1.21654 0.99005 0.93959 0.99822 1.23884 1.04734 1.02238 0.93181 1.84810 1.79445 1.10802 1.18306 0.92879 0.92977 0.92352 0.91760 0.91206 0.86812 0.86789 0.84823 0.92755 0.92783 0.88246 0.88868 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.90 37.16 0.37 -1.45 16 2 C -0.08 -1.11 6.06 -27.88 -0.17 -1.28 16 3 C -0.10 -1.70 5.12 -104.75 -0.54 -2.23 16 4 C -0.13 -2.10 9.72 -39.72 -0.39 -2.48 16 5 C -0.11 -1.91 9.65 -39.24 -0.38 -2.29 16 6 C -0.09 -1.80 6.05 -39.09 -0.24 -2.04 16 7 C -0.03 -0.73 5.53 -104.56 -0.58 -1.30 16 8 C -0.09 -1.91 8.26 -39.35 -0.33 -2.23 16 9 C 0.07 1.62 1.83 -93.81 -0.17 1.45 16 10 H 0.05 1.33 8.10 -51.93 -0.42 0.91 16 11 C -0.51 -13.31 7.45 -34.44 -0.26 -13.56 16 12 H 0.06 1.66 6.35 -52.49 -0.33 1.33 16 13 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 14 N -0.89 -24.03 11.81 55.43 0.65 -23.38 16 15 Si 0.89 20.51 29.55 -169.99 -5.02 15.49 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.11 -2.38 4.88 -27.03 -0.13 -2.52 16 20 C -0.09 -1.77 6.52 37.42 0.24 -1.53 16 21 S -0.17 -3.30 21.99 -107.50 -2.36 -5.66 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 26 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.11 1.80 8.05 -52.49 -0.42 1.38 16 29 H 0.13 2.85 6.44 -52.49 -0.34 2.51 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.05 1.25 8.04 -51.93 -0.42 0.83 16 32 H 0.10 2.44 6.44 -51.93 -0.33 2.11 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.08 1.57 8.08 -51.93 -0.42 1.15 16 LS Contribution 287.39 15.07 4.33 4.33 Total: -1.00 -26.72 287.39 -9.83 -36.54 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.77 Total: 2.55 kcal Atomic # 6 Polarization: -27.23 SS G_CDS: -2.65 Total: -29.88 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.65 Total: -23.38 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.36 Total: -5.66 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.72 -9.83 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.575 kcal (2) G-P(sol) polarization free energy of solvation -26.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds