Wall clock time and date at job start Mon Mar 30 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.46933 * 2 1 4 4 C 1.38343 * 119.99322 * 270.27417 * 3 2 1 5 5 C 1.37747 * 119.51450 * 180.66924 * 4 3 2 6 6 C 1.39624 * 120.61618 * 359.70204 * 5 4 3 7 7 C 1.38178 * 119.97034 * 359.23704 * 6 5 4 8 8 C 1.37774 * 119.99218 * 90.00116 * 3 2 1 9 9 C 1.50043 * 124.70898 * 182.17215 * 7 6 5 10 10 H 1.09005 * 108.67361 * 97.06803 * 9 7 6 11 11 C 1.50706 * 108.67339 * 214.97581 * 9 7 6 12 12 H 1.08001 * 119.99713 * 5.57533 * 11 9 7 13 13 C 1.37874 * 120.00213 * 185.57317 * 11 9 7 14 14 N 1.31523 * 119.99792 * 9.30546 * 13 11 9 15 15 Si 1.86802 * 120.00079 * 189.30075 * 13 11 9 16 16 H 1.48502 * 109.46920 * 94.99692 * 15 13 11 17 17 H 1.48500 * 109.46785 * 214.99745 * 15 13 11 18 18 H 1.48497 * 109.47053 * 334.99835 * 15 13 11 19 19 C 1.51883 * 113.53185 * 336.02304 * 9 7 6 20 20 C 1.53516 * 108.99554 * 60.72962 * 19 9 7 21 21 S 1.76452 * 117.73368 * 178.58914 * 6 5 4 22 22 H 1.09004 * 109.47081 * 60.00320 * 1 2 3 23 23 H 1.09001 * 109.46688 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47068 * 299.99990 * 1 2 3 25 25 H 1.09000 * 109.47068 * 240.00010 * 2 1 3 26 26 H 1.08998 * 109.46611 * 120.00186 * 2 1 3 27 27 H 1.07998 * 120.24420 * 0.41485 * 4 3 2 28 28 H 1.07996 * 119.69224 * 179.68323 * 5 4 3 29 29 H 1.07991 * 119.47816 * 0.02562 * 8 3 2 30 30 H 0.96998 * 119.99504 * 179.97438 * 14 13 11 31 31 H 1.08996 * 109.54731 * 300.87645 * 19 9 7 32 32 H 1.08996 * 109.63289 * 180.63503 * 19 9 7 33 33 H 1.09004 * 109.87815 * 168.09485 * 20 19 9 34 34 H 1.08999 * 109.94028 * 47.05342 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2575 2.0748 -1.1982 5 6 2.7298 3.3687 -1.1868 6 6 2.9763 4.0251 0.0207 7 6 2.7314 3.3816 1.2187 8 6 2.2619 2.0702 1.1933 9 6 2.9135 4.0001 2.5735 10 1 1.9479 4.3664 2.9226 11 6 3.3959 2.9382 3.5279 12 1 3.6363 1.9513 3.1609 13 6 3.5304 3.2265 4.8694 14 7 3.0684 4.3612 5.3477 15 14 4.3687 2.0054 6.0077 16 1 5.8026 2.3649 6.1496 17 1 3.7149 2.0420 7.3406 18 1 4.2551 0.6389 5.4379 19 6 3.9038 5.1516 2.5864 20 6 3.3966 6.2573 1.6500 21 16 3.6164 5.6677 -0.0534 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.0682 1.5731 -2.1356 28 1 2.9114 3.8801 -2.1204 29 1 2.0795 1.5528 2.1235 30 1 3.1627 4.5638 6.2915 31 1 4.8764 4.7999 2.2422 32 1 3.9954 5.5446 3.5989 33 1 3.9751 7.1682 1.8046 34 1 2.3413 6.4517 1.8417 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261101183.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:35 Heat of formation + Delta-G solvation = -12.551439 kcal Electronic energy + Delta-G solvation = -15891.586020 eV Core-core repulsion = 13492.677427 eV Total energy + Delta-G solvation = -2398.908593 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.47635 -37.29644 -34.80054 -33.77100 -31.91130 -30.12106 -28.84971 -25.46804 -24.81961 -23.58474 -22.43142 -20.61976 -18.63653 -18.26102 -16.73380 -16.57105 -16.02747 -15.96985 -14.96656 -14.77054 -14.59982 -14.40213 -14.16281 -13.69943 -13.60743 -13.43719 -13.18934 -12.85447 -12.59898 -12.49873 -12.20972 -12.06943 -11.89864 -11.68321 -11.41541 -11.08311 -10.77778 -10.51644 -10.19487 -9.47744 -8.21566 -8.16595 -6.27683 0.39320 0.60338 0.82930 1.37588 1.40318 1.49318 1.52524 2.38618 2.86230 3.11549 3.97339 4.00172 4.08128 4.13852 4.20567 4.37936 4.50255 4.56496 4.63748 4.72075 4.77182 4.91303 5.05083 5.08580 5.10207 5.15220 5.33912 5.41754 5.43301 5.52527 5.57273 5.72769 5.78395 6.00617 6.15694 6.31559 6.78305 7.38446 8.88510 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.016351 B = 0.010075 C = 0.006662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.985003 B = 2778.560091 C = 4202.054147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.092 4.092 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.112 4.112 7 C -0.065 4.065 8 C -0.115 4.115 9 C 0.072 3.928 10 H 0.010 0.990 11 C -0.524 4.524 12 H 0.058 0.942 13 C 0.019 3.981 14 N -0.913 5.913 15 Si 0.949 3.051 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.268 1.268 19 C -0.096 4.096 20 C -0.091 4.091 21 S -0.146 6.146 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.037 0.963 25 H 0.093 0.907 26 H 0.063 0.937 27 H 0.157 0.843 28 H 0.140 0.860 29 H 0.112 0.888 30 H 0.263 0.737 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.008 -3.779 -11.121 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 C -0.094 4.094 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.224 4.224 7 C -0.071 4.071 8 C -0.135 4.135 9 C 0.053 3.947 10 H 0.028 0.972 11 C -0.561 4.561 12 H 0.076 0.924 13 C -0.180 4.180 14 N -0.552 5.552 15 Si 0.775 3.225 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.193 1.193 19 C -0.136 4.136 20 C -0.239 4.239 21 S 0.095 5.905 22 H 0.080 0.920 23 H 0.094 0.906 24 H 0.056 0.944 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.175 0.825 28 H 0.158 0.842 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.538 -2.958 -11.831 12.292 hybrid contribution -0.098 -0.872 2.343 2.502 sum -1.635 -3.829 -9.488 10.362 Atomic orbital electron populations 1.21721 0.94081 1.02453 1.01657 1.20552 0.96701 0.91054 1.03343 1.20162 0.99100 0.97509 0.92607 1.21106 1.00129 0.93953 0.98238 1.21064 1.00365 0.95750 0.95709 1.21533 1.06883 0.98012 0.96020 1.20238 0.97402 0.95206 0.94215 1.21346 0.99671 0.94231 0.98210 1.17389 0.94730 0.94011 0.88546 0.97189 1.21445 1.44684 0.97561 0.92446 0.92423 1.25662 0.95689 0.97252 0.99395 1.70038 1.45495 1.25261 1.14424 0.85664 0.78809 0.79739 0.78271 1.20232 1.20860 1.19261 1.21413 0.98179 0.94647 0.99328 1.23783 1.04763 1.02017 0.93302 1.84577 1.79357 1.09881 1.16699 0.91989 0.90584 0.94373 0.88875 0.91830 0.82539 0.84193 0.87045 0.92752 0.93786 0.90722 0.86262 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.90 71.98 0.71 -2.48 16 2 C -0.08 -2.00 6.06 29.85 0.18 -1.82 16 3 C -0.09 -3.01 5.12 -19.95 -0.10 -3.11 16 4 C -0.11 -3.36 9.72 22.18 0.22 -3.15 16 5 C -0.11 -3.48 9.65 22.49 0.22 -3.26 16 6 C -0.11 -4.49 6.05 22.59 0.14 -4.35 16 7 C -0.07 -2.96 5.53 -19.82 -0.11 -3.07 16 8 C -0.11 -4.80 8.26 22.42 0.19 -4.61 16 9 C 0.07 3.64 1.83 -12.86 -0.02 3.62 16 10 H 0.01 0.59 8.10 -2.38 -0.02 0.57 16 11 C -0.52 -28.45 7.45 25.60 0.19 -28.26 16 12 H 0.06 3.13 6.35 -2.91 -0.02 3.11 16 13 C 0.02 1.05 5.15 84.65 0.44 1.49 16 14 N -0.91 -51.45 11.81 21.45 0.25 -51.20 16 15 Si 0.95 43.02 29.55 68.60 2.03 45.05 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C -0.10 -4.54 4.88 30.40 0.15 -4.39 16 20 C -0.09 -3.50 6.52 72.16 0.47 -3.03 16 21 S -0.15 -5.35 21.99 -56.49 -1.24 -6.59 16 22 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.85 8.09 -2.39 -0.02 1.83 16 26 H 0.06 1.69 8.08 -2.39 -0.02 1.67 16 27 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 28 H 0.14 3.85 8.05 -2.91 -0.02 3.83 16 29 H 0.11 5.02 6.44 -2.92 -0.02 5.01 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.04 2.10 8.04 -2.39 -0.02 2.08 16 32 H 0.07 3.85 6.44 -2.39 -0.02 3.84 16 33 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 34 H 0.08 3.06 8.08 -2.39 -0.02 3.04 16 Total: -1.00 -59.52 287.39 4.77 -54.74 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.08 Total: 14.43 kcal Atomic # 6 Polarization: -59.09 SS G_CDS: 2.66 Total: -56.43 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.25 Total: -51.20 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.24 Total: -6.59 kcal Total: -59.52 4.77 -54.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261101183.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.192 kcal (2) G-P(sol) polarization free energy of solvation -59.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds